RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 ARMCX3Q9UH62 379 aaPredicted RBP13.09□□□□□ -0.31
USHBP1-201ENST00000252597 FGGP02679 453 aa13.09□□□□□ -0.31
USHBP1-201ENST00000252597 PLA2G4BP0C869 781 aa13.09□□□□□ -0.31
USHBP1-201ENST00000252597 PTGISQ16647 500 aa13.09□□□□□ -0.31
USHBP1-201ENST00000252597 CHADLQ6NUI6 762 aa13.09□□□□□ -0.31
USHBP1-201ENST00000252597 KCNV1Q6PIU1 500 aa13.09□□□□□ -0.31
USHBP1-201ENST00000252597 PHLDB2Q86SQ0 1253 aa13.09□□□□□ -0.31
USHBP1-201ENST00000252597 THOC1Q96FV9 657 aaKnown RBP13.09□□□□□ -0.31
USHBP1-201ENST00000252597 ZNF287Q9HBT7 754 aa13.09□□□□□ -0.31
USHBP1-201ENST00000252597 TMOD4Q9NZQ9 345 aa13.09□□□□□ -0.31
USHBP1-201ENST00000252597 HDAC9Q9UKV0 1011 aa13.09□□□□□ -0.31
USHBP1-201ENST00000252597 SNX24Q9Y343 169 aa13.09□□□□□ -0.31
USHBP1-201ENST00000252597 GRID2IPA4D2P6 1211 aa13.08□□□□□ -0.31
USHBP1-201ENST00000252597 PPP1R12BO60237 982 aaPredicted RBP13.08□□□□□ -0.31
USHBP1-201ENST00000252597 CTNND1O60716 968 aaKnown RBP13.08□□□□□ -0.31
USHBP1-201ENST00000252597 PDHBP11177 359 aa13.08□□□□□ -0.31
USHBP1-201ENST00000252597 CYP2J2P51589 502 aa13.08□□□□□ -0.31
USHBP1-201ENST00000252597 EXOC3L4Q17RC7 722 aa13.08□□□□□ -0.31
USHBP1-201ENST00000252597 FBXO33Q7Z6M2 555 aa13.08□□□□□ -0.31
USHBP1-201ENST00000252597 GUF1Q8N442 669 aaKnown RBP13.08□□□□□ -0.31
USHBP1-201ENST00000252597 GLG1Q92896 1179 aa13.08□□□□□ -0.31
USHBP1-201ENST00000252597 MRRFQ96E11 262 aaKnown RBP13.08□□□□□ -0.31
USHBP1-201ENST00000252597 MXD3Q9BW11 206 aa13.08□□□□□ -0.31
USHBP1-201ENST00000252597 EPN3Q9H201 632 aa13.08□□□□□ -0.31
USHBP1-201ENST00000252597 COL1A1P02452 1464 aaPredicted RBP13.08□□□□□ -0.32
USHBP1-201ENST00000252597 SLIT2O94813 1529 aa13.08□□□□□ -0.32
USHBP1-201ENST00000252597 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.08□□□□□ -0.32
USHBP1-201ENST00000252597 AKAP11Q9UKA4 1901 aa13.08□□□□□ -0.32
USHBP1-201ENST00000252597 SPDYE3A6NKU9 549 aa13.08□□□□□ -0.32
USHBP1-201ENST00000252597 USP17L10C9JJH3 530 aa13.08□□□□□ -0.32
USHBP1-201ENST00000252597 NF2P35240 595 aa13.08□□□□□ -0.32
USHBP1-201ENST00000252597 GTF2IP78347 998 aa13.08□□□□□ -0.32
USHBP1-201ENST00000252597 LRRC14Q15048 493 aa13.08□□□□□ -0.32
USHBP1-201ENST00000252597 ZFYVE27Q5T4F4 411 aa13.08□□□□□ -0.32
USHBP1-201ENST00000252597 PIGOQ8TEQ8 1089 aa13.08□□□□□ -0.32
USHBP1-201ENST00000252597 PSTPIP2Q9H939 334 aa13.08□□□□□ -0.32
USHBP1-201ENST00000252597 NOC2LQ9Y3T9 749 aaKnown RBP13.08□□□□□ -0.32
USHBP1-201ENST00000252597 QPCTQ16769 361 aa13.08□□□□□ -0.32
USHBP1-201ENST00000252597 GLYCTKQ8IVS8 523 aa13.08□□□□□ -0.32
USHBP1-201ENST00000252597 LINC00116Q8NCU8 138 aa13.08□□□□□ -0.32
USHBP1-201ENST00000252597 PAIP2Q9BPZ3 127 aaKnown RBP13.08□□□□□ -0.32
USHBP1-201ENST00000252597 SH2D3AQ9BRG2 576 aa13.08□□□□□ -0.32
USHBP1-201ENST00000252597 ZMYND12Q9H0C1 365 aa13.08□□□□□ -0.32
USHBP1-201ENST00000252597 OSGEPQ9NPF4 335 aa13.08□□□□□ -0.32
USHBP1-201ENST00000252597 LRP6O75581 1613 aa13.07□□□□□ -0.32
USHBP1-201ENST00000252597 OPLAHO14841 1288 aa13.07□□□□□ -0.32
USHBP1-201ENST00000252597 XRCC5P13010 732 aaKnown RBP13.07□□□□□ -0.32
USHBP1-201ENST00000252597 CASP5P51878 434 aa13.07□□□□□ -0.32
USHBP1-201ENST00000252597 SLC18A3Q16572 532 aa13.07□□□□□ -0.32
USHBP1-201ENST00000252597 MSL1Q68DK7 614 aa13.07□□□□□ -0.32
USHBP1-201ENST00000252597 ZNF746Q6NUN9 644 aaPredicted RBP13.07□□□□□ -0.32
USHBP1-201ENST00000252597 HIBCHQ6NVY1 386 aaPredicted RBP13.07□□□□□ -0.32
USHBP1-201ENST00000252597 VPS36Q86VN1 386 aa13.07□□□□□ -0.32
USHBP1-201ENST00000252597 CCDC13Q8IYE1 715 aa13.07□□□□□ -0.32
USHBP1-201ENST00000252597 ELMO3Q96BJ8 720 aa13.07□□□□□ -0.32
USHBP1-201ENST00000252597 NEUROG2Q9H2A3 272 aa13.07□□□□□ -0.32
USHBP1-201ENST00000252597 CUEDC2Q9H467 287 aa13.07□□□□□ -0.32
USHBP1-201ENST00000252597 TAF1DQ9H5J8 278 aaPredicted RBP13.07□□□□□ -0.32
USHBP1-201ENST00000252597 PNMA2Q9UL42 364 aa13.07□□□□□ -0.32
USHBP1-201ENST00000252597 RSPH10B2B2RC85 870 aa13.07□□□□□ -0.32
USHBP1-201ENST00000252597 LDHCP07864 332 aa13.07□□□□□ -0.32
USHBP1-201ENST00000252597 RSPH10BP0C881 870 aa13.07□□□□□ -0.32
USHBP1-201ENST00000252597 PCP11498 1178 aaKnown RBP13.07□□□□□ -0.32
USHBP1-201ENST00000252597 AKR1B1P15121 316 aa13.07□□□□□ -0.32
USHBP1-201ENST00000252597 CASP4P49662 377 aa13.07□□□□□ -0.32
USHBP1-201ENST00000252597 LRRC63Q05C16 580 aa13.07□□□□□ -0.32
USHBP1-201ENST00000252597 KCNA1Q09470 495 aa13.07□□□□□ -0.32
USHBP1-201ENST00000252597 NAA25Q14CX7 972 aa13.07□□□□□ -0.32
USHBP1-201ENST00000252597 AADACL2Q6P093 401 aa13.07□□□□□ -0.32
USHBP1-201ENST00000252597 EP400NLQ6ZTU2 488 aa13.07□□□□□ -0.32
USHBP1-201ENST00000252597 CACNA2D3Q8IZS8 1091 aa13.07□□□□□ -0.32
USHBP1-201ENST00000252597 METTL13Q8N6R0 699 aa13.07□□□□□ -0.32
USHBP1-201ENST00000252597 ANKRD42Q8N9B4 389 aa13.07□□□□□ -0.32
USHBP1-201ENST00000252597 ANKS1AQ92625 1134 aa13.07□□□□□ -0.32
USHBP1-201ENST00000252597 CYFIP2Q96F07 1278 aa13.07□□□□□ -0.32
USHBP1-201ENST00000252597 SH3GLB2Q9NR46 395 aa13.07□□□□□ -0.32
USHBP1-201ENST00000252597 CEP72Q9P209 647 aa13.07□□□□□ -0.32
USHBP1-201ENST00000252597 PALM3A6NDB9 673 aaPredicted RBP13.06□□□□□ -0.32
USHBP1-201ENST00000252597 LAD1O00515 517 aa13.06□□□□□ -0.32
USHBP1-201ENST00000252597 MYL1P05976 194 aa13.06□□□□□ -0.32
USHBP1-201ENST00000252597 H2AFZP0C0S5 128 aa13.06□□□□□ -0.32
USHBP1-201ENST00000252597 HOXA13P31271 388 aaPredicted RBP13.06□□□□□ -0.32
USHBP1-201ENST00000252597 GBP2P32456 591 aaPredicted RBP13.06□□□□□ -0.32
USHBP1-201ENST00000252597 ZKSCAN8Q15776 578 aaPredicted RBP13.06□□□□□ -0.32
USHBP1-201ENST00000252597 VPS72Q15906 364 aa13.06□□□□□ -0.32
USHBP1-201ENST00000252597 H2AFVQ71UI9 128 aa13.06□□□□□ -0.32
USHBP1-201ENST00000252597 ZNF571Q7Z3V5 609 aaPredicted RBP13.06□□□□□ -0.32
USHBP1-201ENST00000252597 ARFGAP2Q8N6H7 521 aa13.06□□□□□ -0.32
USHBP1-201ENST00000252597 USP38Q8NB14 1042 aa13.06□□□□□ -0.32
USHBP1-201ENST00000252597 ZBTB21Q9ULJ3 1066 aa13.06□□□□□ -0.32
USHBP1-201ENST00000252597 UTP11Q9Y3A2 253 aaKnown RBP13.06□□□□□ -0.32
USHBP1-201ENST00000252597 NRAPQ86VF7 1730 aa13.06□□□□□ -0.32
USHBP1-201ENST00000252597 SPATA31A6Q5VVP1 1343 aa13.06□□□□□ -0.32
USHBP1-201ENST00000252597 TBCAO75347 108 aaKnown RBP13.06□□□□□ -0.32
USHBP1-201ENST00000252597 PSMC6P62333 389 aa13.06□□□□□ -0.32
USHBP1-201ENST00000252597 CDC37Q16543 378 aaPredicted RBP13.06□□□□□ -0.32
USHBP1-201ENST00000252597 HGSNATQ68CP4 663 aa13.06□□□□□ -0.32
USHBP1-201ENST00000252597 LRRC55Q6ZSA7 311 aa13.06□□□□□ -0.32
USHBP1-201ENST00000252597 SFR1Q86XK3 245 aa13.06□□□□□ -0.32
USHBP1-201ENST00000252597 CTNNBL1Q8WYA6 563 aaPredicted RBP13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms