RNA–Protein interactions for RNA: ENST00000243082.4

HOXC11-201, Transcript of homeobox C11, humanhuman

TSL 3 BASIC

Gene HOXC11, Length 2,039 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-201ENST00000243082 ERCC3P19447 782 aa20.45■□□□□ 0.86
HOXC11-201ENST00000243082 HMGCS2P54868 508 aa20.45■□□□□ 0.86
HOXC11-201ENST00000243082 EDRF1Q3B7T1 1238 aa20.45■□□□□ 0.86
HOXC11-201ENST00000243082 TKFCQ3LXA3 575 aa20.45■□□□□ 0.86
HOXC11-201ENST00000243082 PPP4R3CPQ6ZMV5 832 aa20.45■□□□□ 0.86
HOXC11-201ENST00000243082 PCMTD1Q96MG8 357 aaPredicted RBP20.45■□□□□ 0.86
HOXC11-201ENST00000243082 LZTFL1Q9NQ48 299 aa20.45■□□□□ 0.86
HOXC11-201ENST00000243082 MYBP10242 640 aa20.44■□□□□ 0.86
HOXC11-201ENST00000243082 MARSP56192 900 aaKnown RBP20.44■□□□□ 0.86
HOXC11-201ENST00000243082 REPS2Q8NFH8 660 aa20.44■□□□□ 0.86
HOXC11-201ENST00000243082 NACC1Q96RE7 527 aa20.44■□□□□ 0.86
HOXC11-201ENST00000243082 JADE2Q9NQC1 790 aa20.44■□□□□ 0.86
HOXC11-201ENST00000243082 RIPK3Q9Y572 518 aa20.44■□□□□ 0.86
HOXC11-201ENST00000243082 DICER1Q9UPY3 1922 aaKnown RBP20.44■□□□□ 0.86
HOXC11-201ENST00000243082 SLU7O95391 586 aaKnown RBP20.44■□□□□ 0.86
HOXC11-201ENST00000243082 GNA14O95837 355 aa20.44■□□□□ 0.86
HOXC11-201ENST00000243082 NCBP1Q09161 790 aaKnown RBP20.44■□□□□ 0.86
HOXC11-201ENST00000243082 NAA30Q147X3 362 aaPredicted RBP20.44■□□□□ 0.86
HOXC11-201ENST00000243082 KNOP1Q1ED39 458 aaKnown RBP20.44■□□□□ 0.86
HOXC11-201ENST00000243082 IQCDQ96DY2 449 aa20.44■□□□□ 0.86
HOXC11-201ENST00000243082 IRX2Q9BZI1 471 aaPredicted RBP20.44■□□□□ 0.86
HOXC11-201ENST00000243082 AGO4Q9HCK5 861 aaKnown RBP20.44■□□□□ 0.86
HOXC11-201ENST00000243082 TRAF3IP3Q9Y228 551 aa20.44■□□□□ 0.86
HOXC11-201ENST00000243082 EPN1Q9Y6I3 576 aaPredicted RBP20.44■□□□□ 0.86
HOXC11-201ENST00000243082 RLFQ13129 1914 aa20.43■□□□□ 0.86
HOXC11-201ENST00000243082 PHIPQ8WWQ0 1821 aa20.43■□□□□ 0.86
HOXC11-201ENST00000243082 C19orf81C9J6K1 198 aa20.43■□□□□ 0.86
HOXC11-201ENST00000243082 TBCAO75347 108 aaKnown RBP20.43■□□□□ 0.86
HOXC11-201ENST00000243082 NDUFA10O95299 355 aa20.43■□□□□ 0.86
HOXC11-201ENST00000243082 EIF2AK2P19525 551 aaKnown RBP20.43■□□□□ 0.86
HOXC11-201ENST00000243082 ITGB3BPQ13352 177 aaPredicted RBP20.43■□□□□ 0.86
HOXC11-201ENST00000243082 ADAM9Q13443 819 aa20.43■□□□□ 0.86
HOXC11-201ENST00000243082 PGM5Q15124 567 aa20.43■□□□□ 0.86
HOXC11-201ENST00000243082 BMT2Q1RMZ1 405 aa20.43■□□□□ 0.86
HOXC11-201ENST00000243082 TSR1Q2NL82 804 aaKnown RBP20.43■□□□□ 0.86
HOXC11-201ENST00000243082 CCDC40Q4G0X9 1142 aa20.43■□□□□ 0.86
HOXC11-201ENST00000243082 ANKRD7Q92527 254 aa20.43■□□□□ 0.86
HOXC11-201ENST00000243082 LXNQ9BS40 222 aa20.43■□□□□ 0.86
HOXC11-201ENST00000243082 OLFML3Q9NRN5 406 aa20.43■□□□□ 0.86
HOXC11-201ENST00000243082 PKD2L1Q9P0L9 805 aa20.43■□□□□ 0.86
HOXC11-201ENST00000243082 ADAMTS5Q9UNA0 930 aa20.43■□□□□ 0.86
HOXC11-201ENST00000243082 SFI1A8K8P3 1242 aa20.43■□□□□ 0.86
HOXC11-201ENST00000243082 DDX39AO00148 427 aaKnown RBP20.43■□□□□ 0.86
HOXC11-201ENST00000243082 EPHB6O15197 1021 aa20.43■□□□□ 0.86
HOXC11-201ENST00000243082 PRPF6O94906 941 aaKnown RBP20.43■□□□□ 0.86
HOXC11-201ENST00000243082 GAP43P17677 238 aa20.43■□□□□ 0.86
HOXC11-201ENST00000243082 DSG3P32926 999 aa20.43■□□□□ 0.86
HOXC11-201ENST00000243082 NOL9Q5SY16 702 aaKnown RBP20.43■□□□□ 0.86
HOXC11-201ENST00000243082 RNF207Q6ZRF8 634 aa20.43■□□□□ 0.86
HOXC11-201ENST00000243082 TRIM59Q8IWR1 403 aa20.43■□□□□ 0.86
HOXC11-201ENST00000243082 REXO2Q9Y3B8 237 aaKnown RBP20.43■□□□□ 0.86
HOXC11-201ENST00000243082 CASQ1P31415 396 aa20.42■□□□□ 0.86
HOXC11-201ENST00000243082 BANK1Q8NDB2 785 aa20.42■□□□□ 0.86
HOXC11-201ENST00000243082 ERO1AQ96HE7 468 aa20.42■□□□□ 0.86
HOXC11-201ENST00000243082 PURBQ96QR8 312 aaKnown RBP20.42■□□□□ 0.86
HOXC11-201ENST00000243082 PDXKO00764 312 aa20.41■□□□□ 0.86
HOXC11-201ENST00000243082 ABL1P00519 1130 aa20.41■□□□□ 0.86
HOXC11-201ENST00000243082 KCNMA1Q12791 1236 aa20.41■□□□□ 0.86
HOXC11-201ENST00000243082 MTMR1Q13613 665 aa20.41■□□□□ 0.86
HOXC11-201ENST00000243082 NSMFQ6X4W1 530 aa20.41■□□□□ 0.86
HOXC11-201ENST00000243082 MIER3Q7Z3K6 550 aa20.41■□□□□ 0.86
HOXC11-201ENST00000243082 CCDC155Q8N6L0 562 aa20.41■□□□□ 0.86
HOXC11-201ENST00000243082 ZNF397Q8NF99 534 aaPredicted RBP20.41■□□□□ 0.86
HOXC11-201ENST00000243082 NEK9Q8TD19 979 aa20.41■□□□□ 0.86
HOXC11-201ENST00000243082 RMDN3Q96TC7 470 aa20.41■□□□□ 0.86
HOXC11-201ENST00000243082 PDCD2LQ9BRP1 358 aa20.41■□□□□ 0.86
HOXC11-201ENST00000243082 PXMP2Q9NR77 195 aa20.41■□□□□ 0.86
HOXC11-201ENST00000243082 FAM207AQ9NSI2 230 aaPredicted RBP20.41■□□□□ 0.86
HOXC11-201ENST00000243082 RNF146Q9NTX7 359 aa20.41■□□□□ 0.86
HOXC11-201ENST00000243082 CETN3O15182 167 aa20.41■□□□□ 0.86
HOXC11-201ENST00000243082 URI1O94763 535 aaPredicted RBP20.41■□□□□ 0.86
HOXC11-201ENST00000243082 NR2F2P24468 414 aa20.41■□□□□ 0.86
HOXC11-201ENST00000243082 ARHGAP25P42331 645 aa20.41■□□□□ 0.86
HOXC11-201ENST00000243082 COG2Q14746 738 aa20.41■□□□□ 0.86
HOXC11-201ENST00000243082 SUPT20HL1Q3ZLR7 823 aa20.41■□□□□ 0.86
HOXC11-201ENST00000243082 DDX55Q8NHQ9 600 aaKnown RBP eCLIP20.41■□□□□ 0.86
HOXC11-201ENST00000243082 MMRN2Q9H8L6 949 aa20.41■□□□□ 0.86
HOXC11-201ENST00000243082 ZNF214Q9UL59 606 aaPredicted RBP20.41■□□□□ 0.86
HOXC11-201ENST00000243082 AFG3L2Q9Y4W6 797 aa20.41■□□□□ 0.86
HOXC11-201ENST00000243082 USP2O75604 605 aaPredicted RBP20.4■□□□□ 0.86
HOXC11-201ENST00000243082 FAM13AO94988 1023 aa20.4■□□□□ 0.86
HOXC11-201ENST00000243082 GCNT3O95395 438 aa20.4■□□□□ 0.86
HOXC11-201ENST00000243082 HNRNPH3P31942 346 aaKnown RBP20.4■□□□□ 0.86
HOXC11-201ENST00000243082 ZNF131P52739 623 aa20.4■□□□□ 0.86
HOXC11-201ENST00000243082 OAZ1P54368 228 aa20.4■□□□□ 0.86
HOXC11-201ENST00000243082 CDK17Q00537 523 aa20.4■□□□□ 0.86
HOXC11-201ENST00000243082 BAATQ14032 418 aaPredicted RBP20.4■□□□□ 0.86
HOXC11-201ENST00000243082 CATSPERGQ6ZRH7 1159 aa20.4■□□□□ 0.86
HOXC11-201ENST00000243082 FIZ1Q96SL8 496 aa20.4■□□□□ 0.86
HOXC11-201ENST00000243082 ZNHIT6Q9NWK9 470 aaKnown RBP20.4■□□□□ 0.86
HOXC11-201ENST00000243082 KCND2Q9NZV8 630 aa20.4■□□□□ 0.86
HOXC11-201ENST00000243082 SBF1O95248 1867 aa20.4■□□□□ 0.86
HOXC11-201ENST00000243082 DDNO94850 711 aaPredicted RBP20.39■□□□□ 0.86
HOXC11-201ENST00000243082 MYCLP12524 364 aaPredicted RBP20.39■□□□□ 0.86
HOXC11-201ENST00000243082 KCNA1Q09470 495 aa20.39■□□□□ 0.86
HOXC11-201ENST00000243082 SNRNP48Q6IEG0 339 aaKnown RBP20.39■□□□□ 0.86
HOXC11-201ENST00000243082 MYCT1Q8N699 235 aa20.39■□□□□ 0.86
HOXC11-201ENST00000243082 LRRN4CLQ8ND94 238 aa20.39■□□□□ 0.86
HOXC11-201ENST00000243082 SMCR8Q8TEV9 937 aaPredicted RBP20.39■□□□□ 0.86
HOXC11-201ENST00000243082 PARVGQ9HBI0 331 aa20.39■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms