RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 SNHG28P0DPA3 235 aa9.66□□□□□ -0.86
VPS4B-201ENST00000238497 HOXA13P31271 388 aaPredicted RBP9.66□□□□□ -0.86
VPS4B-201ENST00000238497 MAGEA10P43363 369 aaPredicted RBP9.66□□□□□ -0.86
VPS4B-201ENST00000238497 ASIC1P78348 528 aa9.66□□□□□ -0.86
VPS4B-201ENST00000238497 ARHGEF16Q5VV41 709 aa9.66□□□□□ -0.86
VPS4B-201ENST00000238497 ARMCX5Q6P1M9 558 aa9.66□□□□□ -0.86
VPS4B-201ENST00000238497 CXCL17Q6UXB2 119 aa9.66□□□□□ -0.86
VPS4B-201ENST00000238497 ARHGAP30Q7Z6I6 1101 aaPredicted RBP9.66□□□□□ -0.86
VPS4B-201ENST00000238497 MSL3Q8N5Y2 521 aaKnown RBP9.66□□□□□ -0.86
VPS4B-201ENST00000238497 CCDC148Q8NFR7 591 aa9.66□□□□□ -0.86
VPS4B-201ENST00000238497 TBC1D7Q9P0N9 293 aa9.66□□□□□ -0.86
VPS4B-201ENST00000238497 DACH1Q9UI36 760 aa9.66□□□□□ -0.86
VPS4B-201ENST00000238497 ZNFX1Q9P2E3 1918 aaKnown RBP9.66□□□□□ -0.86
VPS4B-201ENST00000238497 B4DLN1 442 aa9.66□□□□□ -0.86
VPS4B-201ENST00000238497 URI1O94763 535 aaPredicted RBP9.66□□□□□ -0.86
VPS4B-201ENST00000238497 CD44P16070 742 aaKnown RBP9.66□□□□□ -0.86
VPS4B-201ENST00000238497 ALDH5A1P51649 535 aaPredicted RBP9.66□□□□□ -0.86
VPS4B-201ENST00000238497 MRPL12P52815 198 aaKnown RBP9.66□□□□□ -0.86
VPS4B-201ENST00000238497 FAM47CQ5HY64 1035 aa9.66□□□□□ -0.86
VPS4B-201ENST00000238497 KANK3Q6NY19 840 aa9.66□□□□□ -0.86
VPS4B-201ENST00000238497 MAMDC4Q6UXC1 1216 aa9.66□□□□□ -0.86
VPS4B-201ENST00000238497 TLK2Q86UE8 772 aa9.66□□□□□ -0.86
VPS4B-201ENST00000238497 FGD4Q96M96 766 aa9.66□□□□□ -0.86
VPS4B-201ENST00000238497 RMDN3Q96TC7 470 aa9.66□□□□□ -0.86
VPS4B-201ENST00000238497 MCM3APO60318 1980 aa9.65□□□□□ -0.86
VPS4B-201ENST00000238497 ASGR1P07306 291 aa9.65□□□□□ -0.86
VPS4B-201ENST00000238497 SLFN14P0C7P3 912 aa9.65□□□□□ -0.86
VPS4B-201ENST00000238497 NT5C2P49902 561 aa9.65□□□□□ -0.86
VPS4B-201ENST00000238497 ACLYP53396 1101 aa9.65□□□□□ -0.86
VPS4B-201ENST00000238497 USP17L6PQ6QN14 398 aa9.65□□□□□ -0.86
VPS4B-201ENST00000238497 SLC39A5Q6ZMH5 540 aa9.65□□□□□ -0.86
VPS4B-201ENST00000238497 ZNF467Q7Z7K2 595 aaPredicted RBP9.65□□□□□ -0.86
VPS4B-201ENST00000238497 REXO1Q8N1G1 1221 aaKnown RBP9.65□□□□□ -0.86
VPS4B-201ENST00000238497 TIGD1Q96MW7 591 aa9.65□□□□□ -0.86
VPS4B-201ENST00000238497 WDR11Q9BZH6 1224 aa9.65□□□□□ -0.86
VPS4B-201ENST00000238497 LZTFL1Q9NQ48 299 aa9.65□□□□□ -0.86
VPS4B-201ENST00000238497 PCDHA6Q9UN73 950 aa9.65□□□□□ -0.86
VPS4B-201ENST00000238497 PCDHA8Q9Y5H6 950 aa9.65□□□□□ -0.86
VPS4B-201ENST00000238497 ACTN4O43707 911 aaKnown RBP9.65□□□□□ -0.86
VPS4B-201ENST00000238497 COL6A1P12109 1028 aa9.65□□□□□ -0.86
VPS4B-201ENST00000238497 RAG1P15918 1043 aa9.65□□□□□ -0.86
VPS4B-201ENST00000238497 GSDMDP57764 484 aa9.65□□□□□ -0.86
VPS4B-201ENST00000238497 CACNB1Q02641 598 aaPredicted RBP9.65□□□□□ -0.86
VPS4B-201ENST00000238497 NONOQ15233 471 aaKnown RBP eCLIP9.65□□□□□ -0.86
VPS4B-201ENST00000238497 ENOX2Q16206 610 aaKnown RBP9.65□□□□□ -0.86
VPS4B-201ENST00000238497 SLC35G1Q2M3R5 365 aa9.65□□□□□ -0.86
VPS4B-201ENST00000238497 FILIP1LQ4L180 1135 aa9.65□□□□□ -0.86
VPS4B-201ENST00000238497 TMEM63BQ5T3F8 832 aa9.65□□□□□ -0.86
VPS4B-201ENST00000238497 MCF2L2Q86YR7 1114 aa9.65□□□□□ -0.86
VPS4B-201ENST00000238497 PCSK9Q8NBP7 692 aaKnown RBP9.65□□□□□ -0.86
VPS4B-201ENST00000238497 PPP1R13LQ8WUF5 828 aa9.65□□□□□ -0.86
VPS4B-201ENST00000238497 CLEC4DQ8WXI8 215 aa9.65□□□□□ -0.86
VPS4B-201ENST00000238497 ANKS1AQ92625 1134 aa9.65□□□□□ -0.86
VPS4B-201ENST00000238497 TAAR1Q96RJ0 339 aa9.65□□□□□ -0.86
VPS4B-201ENST00000238497 TMEM39AQ9NV64 488 aa9.65□□□□□ -0.86
VPS4B-201ENST00000238497 A0A1W2PQ45 241 aaPredicted RBP9.64□□□□□ -0.87
VPS4B-201ENST00000238497 A0A1W2PQY0 241 aa9.64□□□□□ -0.87
VPS4B-201ENST00000238497 MYL3P08590 195 aa9.64□□□□□ -0.87
VPS4B-201ENST00000238497 GRM4Q14833 912 aa9.64□□□□□ -0.87
VPS4B-201ENST00000238497 IL17AQ16552 155 aa9.64□□□□□ -0.87
VPS4B-201ENST00000238497 MLKLQ8NB16 471 aa9.64□□□□□ -0.87
VPS4B-201ENST00000238497 TUBE1Q9UJT0 475 aa9.64□□□□□ -0.87
VPS4B-201ENST00000238497 LAMA2P24043 3122 aaKnown RBP9.64□□□□□ -0.87
VPS4B-201ENST00000238497 GREB1LQ9C091 1923 aaPredicted RBP9.64□□□□□ -0.87
VPS4B-201ENST00000238497 ABCB11O95342 1321 aa9.64□□□□□ -0.87
VPS4B-201ENST00000238497 POTEMA6NI47 508 aa9.64□□□□□ -0.87
VPS4B-201ENST00000238497 DCDC2CA8MYV0 355 aa9.64□□□□□ -0.87
VPS4B-201ENST00000238497 ZBTB5O15062 677 aa9.64□□□□□ -0.87
VPS4B-201ENST00000238497 ADCY6O43306 1168 aa9.64□□□□□ -0.87
VPS4B-201ENST00000238497 NEMFO60524 1076 aa9.64□□□□□ -0.87
VPS4B-201ENST00000238497 TDP2O95551 362 aa9.64□□□□□ -0.87
VPS4B-201ENST00000238497 SMPD1P17405 629 aa9.64□□□□□ -0.87
VPS4B-201ENST00000238497 GNA11P29992 359 aa9.64□□□□□ -0.87
VPS4B-201ENST00000238497 NPY5RQ15761 445 aa9.64□□□□□ -0.87
VPS4B-201ENST00000238497 FSCN1Q16658 493 aaKnown RBP9.64□□□□□ -0.87
VPS4B-201ENST00000238497 BRDTQ58F21 947 aaPredicted RBP9.64□□□□□ -0.87
VPS4B-201ENST00000238497 OR6J1Q8NGC5 347 aa9.64□□□□□ -0.87
VPS4B-201ENST00000238497 SZT2Q5T011 3432 aa9.64□□□□□ -0.87
VPS4B-201ENST00000238497 TXNP10599 105 aaKnown RBP9.64□□□□□ -0.87
VPS4B-201ENST00000238497 CABP7Q86V35 215 aa9.64□□□□□ -0.87
VPS4B-201ENST00000238497 POTEDQ86YR6 584 aa9.64□□□□□ -0.87
VPS4B-201ENST00000238497 NSUN6Q8TEA1 469 aaKnown RBP9.64□□□□□ -0.87
VPS4B-201ENST00000238497 NELFBQ8WX92 580 aa9.64□□□□□ -0.87
VPS4B-201ENST00000238497 COPS5Q92905 334 aa9.64□□□□□ -0.87
VPS4B-201ENST00000238497 PPP1R12CQ9BZL4 782 aa9.64□□□□□ -0.87
VPS4B-201ENST00000238497 ZEB2O60315 1214 aa9.63□□□□□ -0.87
VPS4B-201ENST00000238497 CBX1P83916 185 aa9.63□□□□□ -0.87
VPS4B-201ENST00000238497 ATP2C1P98194 919 aaPredicted RBP9.63□□□□□ -0.87
VPS4B-201ENST00000238497 SARM1Q6SZW1 724 aa9.63□□□□□ -0.87
VPS4B-201ENST00000238497 IGSF22Q8N9C0 903 aa9.63□□□□□ -0.87
VPS4B-201ENST00000238497 ANKRD20A12PQ8NF67 263 aa9.63□□□□□ -0.87
VPS4B-201ENST00000238497 MYRIPQ8NFW9 859 aa9.63□□□□□ -0.87
VPS4B-201ENST00000238497 KIF18AQ8NI77 898 aa9.63□□□□□ -0.87
VPS4B-201ENST00000238497 SYTL5Q8TDW5 730 aaPredicted RBP9.63□□□□□ -0.87
VPS4B-201ENST00000238497 NOC3LQ8WTT2 800 aaKnown RBP9.63□□□□□ -0.87
VPS4B-201ENST00000238497 VTA1Q9NP79 307 aa9.63□□□□□ -0.87
VPS4B-201ENST00000238497 SLC39A2Q9NP94 309 aa9.63□□□□□ -0.87
VPS4B-201ENST00000238497 BARHL2Q9NY43 387 aa9.63□□□□□ -0.87
VPS4B-201ENST00000238497 PKD2L1Q9P0L9 805 aa9.63□□□□□ -0.87
VPS4B-201ENST00000238497 ASTN1O14525 1302 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms