RNA–Protein interactions for RNA: ENSMUST00000054384.5

Trim56-201, Transcript of E3 ubiquitin-protein ligase TRIM56, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim56, Length 9,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56-201ENSMUST00000054384 Ttc17E9PVB5 1198 aa12.78□□□□□ -0.36
Trim56-201ENSMUST00000054384 Serpinb3aG3X9V8 387 aa12.78□□□□□ -0.36
Trim56-201ENSMUST00000054384 Serpind1P49182 478 aa12.78□□□□□ -0.36
Trim56-201ENSMUST00000054384 Epas1P97481 874 aa12.78□□□□□ -0.36
Trim56-201ENSMUST00000054384 HmcesQ8R1M0 353 aaKnown RBP12.78□□□□□ -0.36
Trim56-201ENSMUST00000054384 Ggps1Q9WTN0 300 aa12.78□□□□□ -0.36
Trim56-201ENSMUST00000054384 Pde4aO89084 844 aa12.78□□□□□ -0.36
Trim56-201ENSMUST00000054384 Cops2P61202 443 aaKnown RBP12.78□□□□□ -0.36
Trim56-201ENSMUST00000054384 Dis3l2Q8CI75 870 aaKnown RBP12.78□□□□□ -0.36
Trim56-201ENSMUST00000054384 GartQ64737 1010 aa12.78□□□□□ -0.36
Trim56-201ENSMUST00000054384 Znf598Q80YR4 908 aaKnown RBP12.78□□□□□ -0.36
Trim56-201ENSMUST00000054384 Ddit3P35639 168 aa12.78□□□□□ -0.36
Trim56-201ENSMUST00000054384 Tlr7P58681 1050 aa12.78□□□□□ -0.36
Trim56-201ENSMUST00000054384 Lzts1P60853 599 aa12.78□□□□□ -0.36
Trim56-201ENSMUST00000054384 Lrch1P62046 709 aa12.78□□□□□ -0.36
Trim56-201ENSMUST00000054384 Sin3bQ62141 1098 aa12.78□□□□□ -0.36
Trim56-201ENSMUST00000054384 Panx2Q6IMP4 677 aa12.78□□□□□ -0.36
Trim56-201ENSMUST00000054384 Gramd1bQ80TI0 738 aa12.78□□□□□ -0.36
Trim56-201ENSMUST00000054384 Ripor2Q80U16 1078 aa12.78□□□□□ -0.36
Trim56-201ENSMUST00000054384 F13a1Q8BH61 732 aa12.78□□□□□ -0.36
Trim56-201ENSMUST00000054384 Phactr3Q8BYK5 558 aa12.78□□□□□ -0.36
Trim56-201ENSMUST00000054384 Eepd1Q3TGW2 569 aa12.77□□□□□ -0.36
Trim56-201ENSMUST00000054384 Zfp113Q8C689 439 aa12.77□□□□□ -0.36
Trim56-201ENSMUST00000054384 Ppp1r12aQ9DBR7 1029 aaKnown RBP12.77□□□□□ -0.36
Trim56-201ENSMUST00000054384 Tcp11x2A2AEI7 503 aa12.77□□□□□ -0.36
Trim56-201ENSMUST00000054384 IkbkbO88351 757 aa12.77□□□□□ -0.36
Trim56-201ENSMUST00000054384 Stat5bP42232 786 aa12.77□□□□□ -0.36
Trim56-201ENSMUST00000054384 Pabpc4Q6PHQ9 660 aaKnown RBP12.77□□□□□ -0.36
Trim56-201ENSMUST00000054384 Lsm14bQ8CGC4 385 aaKnown RBP12.77□□□□□ -0.36
Trim56-201ENSMUST00000054384 Rbm31yQ9D3U4 565 aa12.77□□□□□ -0.36
Trim56-201ENSMUST00000054384 Shcbp1Q9Z179 668 aa12.77□□□□□ -0.36
Trim56-201ENSMUST00000054384 Gdf11Q9Z1W4 405 aa12.77□□□□□ -0.36
Trim56-201ENSMUST00000054384 4932429P05RikA2ADI4 785 aa12.77□□□□□ -0.36
Trim56-201ENSMUST00000054384 Hif1aQ61221 836 aaKnown RBP12.77□□□□□ -0.36
Trim56-201ENSMUST00000054384 Ahi1Q8K3E5 1047 aa12.77□□□□□ -0.36
Trim56-201ENSMUST00000054384 Sun1Q9D666 913 aaKnown RBP12.77□□□□□ -0.36
Trim56-201ENSMUST00000054384 Ect2Q07139 913 aa12.77□□□□□ -0.37
Trim56-201ENSMUST00000054384 Mylk3Q3UIZ8 795 aa12.77□□□□□ -0.37
Trim56-201ENSMUST00000054384 Atp5c1Q91VR2 298 aaKnown RBP12.77□□□□□ -0.37
Trim56-201ENSMUST00000054384 Trim12cD3Z3L3 497 aa12.77□□□□□ -0.37
Trim56-201ENSMUST00000054384 Ptk2P34152 1090 aa12.77□□□□□ -0.37
Trim56-201ENSMUST00000054384 Znf12Q7TSI0 686 aa12.77□□□□□ -0.37
Trim56-201ENSMUST00000054384 Strip2Q8C9H6 844 aa12.77□□□□□ -0.37
Trim56-201ENSMUST00000054384 Gga1Q8R0H9 635 aa12.77□□□□□ -0.37
Trim56-201ENSMUST00000054384 CenpkQ9ESN5 271 aa12.77□□□□□ -0.37
Trim56-201ENSMUST00000054384 Tmod3Q9JHJ0 352 aa12.77□□□□□ -0.37
Trim56-201ENSMUST00000054384 Gadd45gQ9Z111 159 aa12.77□□□□□ -0.37
Trim56-201ENSMUST00000054384 Cnksr1A2A9K7 700 aa12.77□□□□□ -0.37
Trim56-201ENSMUST00000054384 Abcb5B5X0E4 1255 aa12.77□□□□□ -0.37
Trim56-201ENSMUST00000054384 Cep126Q0VBV7 1103 aa12.77□□□□□ -0.37
Trim56-201ENSMUST00000054384 Afap1l2Q5DTU0 825 aa12.77□□□□□ -0.37
Trim56-201ENSMUST00000054384 Zbtb17Q60821 794 aa12.77□□□□□ -0.37
Trim56-201ENSMUST00000054384 Sval3Q76I99 144 aa12.77□□□□□ -0.37
Trim56-201ENSMUST00000054384 Rpf1Q7TND5 349 aaKnown RBP12.77□□□□□ -0.37
Trim56-201ENSMUST00000054384 Osbpl6Q8BXR9 959 aa12.77□□□□□ -0.37
Trim56-201ENSMUST00000054384 Lrrc41Q8K1C9 807 aa12.77□□□□□ -0.37
Trim56-201ENSMUST00000054384 MajinQ9D992 256 aa12.77□□□□□ -0.37
Trim56-201ENSMUST00000054384 CsadQ9DBE0 493 aa12.77□□□□□ -0.37
Trim56-201ENSMUST00000054384 FliiQ9JJ28 1271 aa12.77□□□□□ -0.37
Trim56-201ENSMUST00000054384 Phldb3E9QAF4 648 aa12.77□□□□□ -0.37
Trim56-201ENSMUST00000054384 Sfi1Q3UZY0 1216 aaKnown RBP12.77□□□□□ -0.37
Trim56-201ENSMUST00000054384 Inpp5fQ8CDA1 1132 aa12.77□□□□□ -0.37
Trim56-201ENSMUST00000054384 Krt78E9Q0F0 1068 aa12.77□□□□□ -0.37
Trim56-201ENSMUST00000054384 Zmym1Q3TJB1 983 aa12.77□□□□□ -0.37
Trim56-201ENSMUST00000054384 Gucy2gQ6TL19 1100 aa12.77□□□□□ -0.37
Trim56-201ENSMUST00000054384 Hacd3Q8K2C9 362 aa12.77□□□□□ -0.37
Trim56-201ENSMUST00000054384 Ero1aQ8R180 464 aa12.77□□□□□ -0.37
Trim56-201ENSMUST00000054384 Rpn1Q91YQ5 608 aaKnown RBP12.77□□□□□ -0.37
Trim56-201ENSMUST00000054384 Aoc3O70423 765 aa12.76□□□□□ -0.37
Trim56-201ENSMUST00000054384 Ccdc85bQ6PDY0 202 aa12.76□□□□□ -0.37
Trim56-201ENSMUST00000054384 Ap1s3Q7TN05 154 aa12.76□□□□□ -0.37
Trim56-201ENSMUST00000054384 Fkbp6Q91XW8 327 aa12.76□□□□□ -0.37
Trim56-201ENSMUST00000054384 Rad51ap2G3UW63 976 aa12.76□□□□□ -0.37
Trim56-201ENSMUST00000054384 FancaQ9JL70 1439 aa12.76□□□□□ -0.37
Trim56-201ENSMUST00000054384 A530032D15RikE9Q422 215 aa12.76□□□□□ -0.37
Trim56-201ENSMUST00000054384 Orc4O88708 433 aa12.76□□□□□ -0.37
Trim56-201ENSMUST00000054384 Trim43aQ3TL54 445 aa12.76□□□□□ -0.37
Trim56-201ENSMUST00000054384 NfkbibQ60778 359 aa12.76□□□□□ -0.37
Trim56-201ENSMUST00000054384 FcgrtQ61559 365 aa12.76□□□□□ -0.37
Trim56-201ENSMUST00000054384 Slc26a6Q8CIW6 758 aa12.76□□□□□ -0.37
Trim56-201ENSMUST00000054384 Hps3Q91VB4 1002 aa12.76□□□□□ -0.37
Trim56-201ENSMUST00000054384 Usp14Q9JMA1 493 aaKnown RBP12.76□□□□□ -0.37
Trim56-201ENSMUST00000054384 Gm10639E9Q6L7 222 aa12.76□□□□□ -0.37
Trim56-201ENSMUST00000054384 Pde9aO70628 534 aa12.76□□□□□ -0.37
Trim56-201ENSMUST00000054384 Gsta2P10648 222 aa12.76□□□□□ -0.37
Trim56-201ENSMUST00000054384 Ppp3ccP48455 513 aa12.76□□□□□ -0.37
Trim56-201ENSMUST00000054384 Tgs1Q923W1 853 aa12.76□□□□□ -0.37
Trim56-201ENSMUST00000054384 4921524L21RikQ9D5T2 438 aa12.76□□□□□ -0.37
Trim56-201ENSMUST00000054384 Pde6aP27664 859 aa12.76□□□□□ -0.37
Trim56-201ENSMUST00000054384 Tgif2lx2Q8K5B9 231 aa12.76□□□□□ -0.37
Trim56-201ENSMUST00000054384 Gpr108Q91WD0 569 aa12.76□□□□□ -0.37
Trim56-201ENSMUST00000054384 ParvbQ9ES46 365 aa12.76□□□□□ -0.37
Trim56-201ENSMUST00000054384 Lsp1P19973 330 aa12.76□□□□□ -0.37
Trim56-201ENSMUST00000054384 Cfap52Q5F201 620 aa12.76□□□□□ -0.37
Trim56-201ENSMUST00000054384 Anks1bQ8BIZ1 1259 aa12.76□□□□□ -0.37
Trim56-201ENSMUST00000054384 Asxl2Q8BZ32 1370 aa12.76□□□□□ -0.37
Trim56-201ENSMUST00000054384 Gm17615E9Q9P2 165 aa12.76□□□□□ -0.37
Trim56-201ENSMUST00000054384 Gm10354K7N6A0 256 aa12.76□□□□□ -0.37
Trim56-201ENSMUST00000054384 Casq2O09161 415 aa12.76□□□□□ -0.37
Trim56-201ENSMUST00000054384 BaatQ91X34 420 aa12.76□□□□□ -0.37
Retrieved 100 of 22,080 RNA–protein pairs in 14.1 ms