RNA–Protein interactions for RNA: YMR223W

UBP8, Transcript of Ubiquitin-specific protease component of the SAGA acetylation complex, yeastyeast

Gene UBP8, Length 1,416 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBP8YMR223W HHF1P02309 103 aaKnown RBP3.15□□□□□ -1.91
UBP8YMR223W EXO70P19658 623 aa3.15□□□□□ -1.91
UBP8YMR223W VPS3P23643 1011 aa3.15□□□□□ -1.91
UBP8YMR223W SNT1P25357 1226 aa3.15□□□□□ -1.91
UBP8YMR223W PRD1P25375 712 aa3.15□□□□□ -1.91
UBP8YMR223W ITR1P30605 584 aa3.15□□□□□ -1.91
UBP8YMR223W COT1P32798 439 aa3.15□□□□□ -1.91
UBP8YMR223W MRPL37P36532 105 aa3.15□□□□□ -1.91
UBP8YMR223W CST26P38226 397 aa3.15□□□□□ -1.91
UBP8YMR223W VID24P38263 362 aa3.15□□□□□ -1.91
UBP8YMR223W MNL1P38888 796 aa3.15□□□□□ -1.91
UBP8YMR223W CAK1P43568 368 aaPredicted RBP3.15□□□□□ -1.91
UBP8YMR223W SNG1P46950 547 aa3.15□□□□□ -1.91
UBP8YMR223W PIB2P53191 635 aa3.15□□□□□ -1.91
UBP8YMR223W EFM5P53200 248 aaKnown RBP3.15□□□□□ -1.91
UBP8YMR223W DSL1P53847 754 aa3.15□□□□□ -1.91
UBP8YMR223W AQR1P53943 586 aa3.15□□□□□ -1.91
UBP8YMR223W IRC15Q02733 499 aa3.15□□□□□ -1.91
UBP8YMR223W URC2Q04411 772 aa3.15□□□□□ -1.91
UBP8YMR223W RTN1Q04947 295 aaKnown RBP3.15□□□□□ -1.91
UBP8YMR223W CUR1Q06469 252 aa3.15□□□□□ -1.91
UBP8YMR223W ARR1Q06596 294 aa3.15□□□□□ -1.91
UBP8YMR223W AHC1Q12433 566 aa3.15□□□□□ -1.91
UBP8YMR223W CDC36P06100 191 aaPredicted RBP3.14□□□□□ -1.91
UBP8YMR223W CPR1P14832 162 aaKnown RBP3.14□□□□□ -1.91
UBP8YMR223W TAL1P15019 335 aaKnown RBP3.14□□□□□ -1.91
UBP8YMR223W AFG1P32317 509 aa3.14□□□□□ -1.91
UBP8YMR223W SRB4P32569 687 aa3.14□□□□□ -1.91
UBP8YMR223W PMT1P33775 817 aa3.14□□□□□ -1.91
UBP8YMR223W YBL055CP34220 418 aaPredicted RBP3.14□□□□□ -1.91
UBP8YMR223W MAL33P38157 468 aa3.14□□□□□ -1.91
UBP8YMR223W NDT80P38830 627 aa3.14□□□□□ -1.91
UBP8YMR223W WSS1P38838 269 aa3.14□□□□□ -1.91
UBP8YMR223W YHB1P39676 399 aaKnown RBP3.14□□□□□ -1.91
UBP8YMR223W SER3P40054 469 aa3.14□□□□□ -1.91
UBP8YMR223W PTR3P43606 678 aa3.14□□□□□ -1.91
UBP8YMR223W FAR3P46671 204 aa3.14□□□□□ -1.91
UBP8YMR223W PNC1P53184 216 aaKnown RBP3.14□□□□□ -1.91
UBP8YMR223W PPM1Q04081 328 aa3.14□□□□□ -1.91
UBP8YMR223W GGA1Q06336 557 aa3.14□□□□□ -1.91
UBP8YMR223W YEH1Q07804 573 aa3.14□□□□□ -1.91
UBP8YMR223W DCI1Q08558 271 aa3.14□□□□□ -1.91
UBP8YMR223W RRG7Q08774 242 aaPredicted RBP3.14□□□□□ -1.91
UBP8YMR223W LSP1Q12230 341 aaKnown RBP3.14□□□□□ -1.91
UBP8YMR223W YJR112W-AQ3E743 109 aa3.14□□□□□ -1.91
UBP8YMR223W YBL111CQ3E7Y5 667 aa3.14□□□□□ -1.91
UBP8YMR223W YIL002W-AQ3E7Z5 69 aa3.14□□□□□ -1.91
UBP8YMR223W YML133CQ03099 1374 aa3.14□□□□□ -1.91
UBP8YMR223W YLL066CQ99208 1374 aa3.14□□□□□ -1.91
UBP8YMR223W CBP2P03874 630 aaPredicted RBP3.13□□□□□ -1.91
UBP8YMR223W STE3P06783 470 aa3.13□□□□□ -1.91
UBP8YMR223W CLN1P20437 546 aa3.13□□□□□ -1.91
UBP8YMR223W RPI1P23250 407 aaKnown RBP3.13□□□□□ -1.91
UBP8YMR223W BOS1P25385 244 aa3.13□□□□□ -1.91
UBP8YMR223W FRE1P32791 686 aa3.13□□□□□ -1.91
UBP8YMR223W LTV1P34078 463 aa3.13□□□□□ -1.91
UBP8YMR223W SIP3P38717 1229 aa3.13□□□□□ -1.91
UBP8YMR223W CCT6P39079 546 aa3.13□□□□□ -1.91
UBP8YMR223W UTP18P40362 594 aaPredicted RBP3.13□□□□□ -1.91
UBP8YMR223W ELP2P42935 788 aa3.13□□□□□ -1.91
UBP8YMR223W GCN20P43535 752 aaKnown RBP3.13□□□□□ -1.91
UBP8YMR223W YFR018CP43599 363 aa3.13□□□□□ -1.91
UBP8YMR223W EFM3P47163 339 aa3.13□□□□□ -1.91
UBP8YMR223W EFM6P53970 246 aa3.13□□□□□ -1.91
UBP8YMR223W ELP3Q02908 557 aaKnown RBP3.13□□□□□ -1.91
UBP8YMR223W RBS1Q05672 457 aaKnown RBP3.13□□□□□ -1.91
UBP8YMR223W PBA1Q05778 276 aa3.13□□□□□ -1.91
UBP8YMR223W BOP2Q06150 570 aa3.13□□□□□ -1.91
UBP8YMR223W YPT6Q99260 215 aa3.13□□□□□ -1.91
UBP8YMR223W SSK22P25390 1331 aaPredicted RBP3.13□□□□□ -1.91
UBP8YMR223W STE2D6VTK4 431 aa3.12□□□□□ -1.91
UBP8YMR223W DAL81P21657 970 aa3.12□□□□□ -1.91
UBP8YMR223W PUP3P25451 205 aaKnown RBP3.12□□□□□ -1.91
UBP8YMR223W SYN8P31377 255 aa3.12□□□□□ -1.91
UBP8YMR223W CBF5P33322 483 aaKnown RBP RIP-Chip data3.12□□□□□ -1.91not detected
UBP8YMR223W AUR1P36107 401 aaPredicted RBP3.12□□□□□ -1.91
UBP8YMR223W NUP133P36161 1157 aa3.12□□□□□ -1.91
UBP8YMR223W PFF1P38244 976 aa3.12□□□□□ -1.91
UBP8YMR223W MSR1P38714 643 aa3.12□□□□□ -1.91
UBP8YMR223W KEL1P38853 1164 aaKnown RBP3.12□□□□□ -1.91
UBP8YMR223W YHR210CP38893 341 aa3.12□□□□□ -1.91
UBP8YMR223W MNN9P39107 395 aaKnown RBP3.12□□□□□ -1.91
UBP8YMR223W SCC4P40090 624 aa3.12□□□□□ -1.91
UBP8YMR223W GCD14P46959 383 aaPredicted RBP3.12□□□□□ -1.91
UBP8YMR223W YGL185CP53100 379 aa3.12□□□□□ -1.91
UBP8YMR223W YGL138CP53122 345 aa3.12□□□□□ -1.91
UBP8YMR223W TIM21P53220 239 aa3.12□□□□□ -1.91
UBP8YMR223W RRP46P53256 223 aaPredicted RBP3.12□□□□□ -1.91
UBP8YMR223W YNL134CP53912 376 aaKnown RBP3.12□□□□□ -1.91
UBP8YMR223W YDR239CQ03780 787 aa3.12□□□□□ -1.91
UBP8YMR223W YLR297WQ05899 129 aa3.12□□□□□ -1.91
UBP8YMR223W SSQ1Q05931 657 aaPredicted RBP3.12□□□□□ -1.91
UBP8YMR223W YOR365CQ08844 703 aa3.12□□□□□ -1.91
UBP8YMR223W YOL107WQ12239 342 aa3.12□□□□□ -1.91
UBP8YMR223W GAL80P04387 435 aa3.11□□□□□ -1.91
UBP8YMR223W DFR1P07807 211 aaKnown RBP RIP-Chip data3.11□□□□□ -1.91not detected
UBP8YMR223W RPL3P14126 387 aaKnown RBP3.11□□□□□ -1.91
UBP8YMR223W FUS3P16892 353 aaKnown RBP3.11□□□□□ -1.91
UBP8YMR223W APA2P22108 325 aa3.11□□□□□ -1.91
UBP8YMR223W UTR4P32626 227 aa3.11□□□□□ -1.91
Retrieved 100 of 5,963 RNA–protein pairs in 13.7 ms