RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, human

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCN1A-222	ENST00000642141	GSTTP1	A0A1W2PQM5	241 aa		11.78	□□□□□ -0.52
SCN1A-222	ENST00000642141	KIF28P	B7ZC32	967 aa		11.78	□□□□□ -0.52
SCN1A-222	ENST00000642141	CXCL10	P02778	98 aa		11.78	□□□□□ -0.52
SCN1A-222	ENST00000642141	HMGB1	P09429	215 aa	Known RBP	11.78	□□□□□ -0.52
SCN1A-222	ENST00000642141	AR	P10275	920 aa		11.78	□□□□□ -0.52
SCN1A-222	ENST00000642141	HSPA4	P34932	840 aa		11.78	□□□□□ -0.52
SCN1A-222	ENST00000642141	METAP2	P50579	478 aa	Known RBP eCLIP	11.78	□□□□□ -0.52
SCN1A-222	ENST00000642141	IGBP1	P78318	339 aa		11.78	□□□□□ -0.52
SCN1A-222	ENST00000642141	TAP1	Q03518	808 aa		11.78	□□□□□ -0.52
SCN1A-222	ENST00000642141	IKBKE	Q14164	716 aa		11.78	□□□□□ -0.52
SCN1A-222	ENST00000642141	JAKMIP3	Q5VZ66	844 aa		11.78	□□□□□ -0.52
SCN1A-222	ENST00000642141	CNKSR3	Q6P9H4	555 aa		11.78	□□□□□ -0.52
SCN1A-222	ENST00000642141	BLOC1S2	Q6QNY1	142 aa		11.78	□□□□□ -0.52
SCN1A-222	ENST00000642141	LIN28B	Q6ZN17	250 aa	Known RBP eCLIP	11.78	□□□□□ -0.52
SCN1A-222	ENST00000642141	GIMAP8	Q8ND71	665 aa	Predicted RBP	11.78	□□□□□ -0.52
SCN1A-222	ENST00000642141	DBF4B	Q8NFT6	615 aa		11.78	□□□□□ -0.52
SCN1A-222	ENST00000642141	PHOSPHO2	Q8TCD6	241 aa		11.78	□□□□□ -0.52
SCN1A-222	ENST00000642141	GLG1	Q92896	1179 aa		11.78	□□□□□ -0.52
SCN1A-222	ENST00000642141	PHKB	Q93100	1093 aa		11.78	□□□□□ -0.52
SCN1A-222	ENST00000642141	GPRASP2	Q96D09	838 aa		11.78	□□□□□ -0.52
SCN1A-222	ENST00000642141	JADE2	Q9NQC1	790 aa		11.78	□□□□□ -0.52
SCN1A-222	ENST00000642141	ZNF215	Q9UL58	517 aa	Predicted RBP	11.78	□□□□□ -0.52
SCN1A-222	ENST00000642141	MTUS1	Q9ULD2	1270 aa		11.78	□□□□□ -0.52
SCN1A-222	ENST00000642141	TET1	Q8NFU7	2136 aa		11.78	□□□□□ -0.52
SCN1A-222	ENST00000642141	LGR5	O75473	907 aa		11.77	□□□□□ -0.53
SCN1A-222	ENST00000642141	BAIAP3	O94812	1187 aa		11.77	□□□□□ -0.53
SCN1A-222	ENST00000642141	NEFL	P07196	543 aa		11.77	□□□□□ -0.53
SCN1A-222	ENST00000642141	RPS6KB1	P23443	525 aa		11.77	□□□□□ -0.53
SCN1A-222	ENST00000642141	ZNF76	P36508	570 aa		11.77	□□□□□ -0.53
SCN1A-222	ENST00000642141	CCT2	P78371	535 aa	Known RBP	11.77	□□□□□ -0.53
SCN1A-222	ENST00000642141	RBL2	Q08999	1139 aa		11.77	□□□□□ -0.53
SCN1A-222	ENST00000642141	MAPK8IP2	Q13387	824 aa	Predicted RBP	11.77	□□□□□ -0.53
SCN1A-222	ENST00000642141	RUFY4	Q6ZNE9	571 aa		11.77	□□□□□ -0.53
SCN1A-222	ENST00000642141	LMBR1	Q8WVP7	490 aa		11.77	□□□□□ -0.53
SCN1A-222	ENST00000642141	SEPT1	Q8WYJ6	367 aa		11.77	□□□□□ -0.53
SCN1A-222	ENST00000642141	KCNB2	Q92953	911 aa		11.77	□□□□□ -0.53
SCN1A-222	ENST00000642141	CDHR1	Q96JP9	859 aa		11.77	□□□□□ -0.53
SCN1A-222	ENST00000642141	MXRA8	Q9BRK3	442 aa		11.77	□□□□□ -0.53
SCN1A-222	ENST00000642141	EHMT1	Q9H9B1	1298 aa		11.77	□□□□□ -0.53
SCN1A-222	ENST00000642141	NCOA5	Q9HCD5	579 aa	Known RBP	11.77	□□□□□ -0.53
SCN1A-222	ENST00000642141	KCNH7	Q9NS40	1196 aa		11.77	□□□□□ -0.53
SCN1A-222	ENST00000642141	BARHL2	Q9NY43	387 aa		11.77	□□□□□ -0.53
SCN1A-222	ENST00000642141	ABHD14A-ACY1	A0A1B0GW23	586 aa		11.76	□□□□□ -0.53
SCN1A-222	ENST00000642141	DDX39A	O00148	427 aa	Known RBP	11.76	□□□□□ -0.53
SCN1A-222	ENST00000642141	UPP2	O95045	317 aa		11.76	□□□□□ -0.53
SCN1A-222	ENST00000642141	GNAT1	P11488	350 aa		11.76	□□□□□ -0.53
SCN1A-222	ENST00000642141	HOXC8	P31273	242 aa		11.76	□□□□□ -0.53
SCN1A-222	ENST00000642141	PPFIA1	Q13136	1202 aa		11.76	□□□□□ -0.53
SCN1A-222	ENST00000642141	SKIV2L	Q15477	1246 aa	Known RBP	11.76	□□□□□ -0.53
SCN1A-222	ENST00000642141	ANO3	Q9BYT9	981 aa		11.76	□□□□□ -0.53
SCN1A-222	ENST00000642141	JPH1	Q9HDC5	661 aa	Predicted RBP	11.76	□□□□□ -0.53
SCN1A-222	ENST00000642141	TANC1	Q9C0D5	1861 aa		11.76	□□□□□ -0.53
SCN1A-222	ENST00000642141	TRANK1	O15050	2925 aa		11.75	□□□□□ -0.53
SCN1A-222	ENST00000642141	DTNB	O60941	627 aa		11.75	□□□□□ -0.53
SCN1A-222	ENST00000642141	REC8	O95072	547 aa		11.75	□□□□□ -0.53
SCN1A-222	ENST00000642141	PARN	O95453	639 aa	Known RBP	11.75	□□□□□ -0.53
SCN1A-222	ENST00000642141	CHRNA1	P02708	482 aa		11.75	□□□□□ -0.53
SCN1A-222	ENST00000642141	SCG2	P13521	617 aa		11.75	□□□□□ -0.53
SCN1A-222	ENST00000642141	ITGB3BP	Q13352	177 aa	Predicted RBP	11.75	□□□□□ -0.53
SCN1A-222	ENST00000642141	GRIK4	Q16099	956 aa		11.75	□□□□□ -0.53
SCN1A-222	ENST00000642141	PFKFB3	Q16875	520 aa	Predicted RBP	11.75	□□□□□ -0.53
SCN1A-222	ENST00000642141	CEP55	Q53EZ4	464 aa		11.75	□□□□□ -0.53
SCN1A-222	ENST00000642141	MYOCD	Q8IZQ8	938 aa		11.75	□□□□□ -0.53
SCN1A-222	ENST00000642141	RASGRP4	Q8TDF6	673 aa		11.75	□□□□□ -0.53
SCN1A-222	ENST00000642141	TRAPPC12	Q8WVT3	735 aa		11.75	□□□□□ -0.53
SCN1A-222	ENST00000642141	PCYT2	Q99447	389 aa		11.75	□□□□□ -0.53
SCN1A-222	ENST00000642141	RAD9A	Q99638	391 aa		11.75	□□□□□ -0.53
SCN1A-222	ENST00000642141	SDF4	Q9BRK5	362 aa		11.75	□□□□□ -0.53
SCN1A-222	ENST00000642141	SLC26A6	Q9BXS9	759 aa		11.75	□□□□□ -0.53
SCN1A-222	ENST00000642141	FAM49A	Q9H0Q0	323 aa	Predicted RBP	11.75	□□□□□ -0.53
SCN1A-222	ENST00000642141	SMARCAD1	Q9H4L7	1026 aa		11.75	□□□□□ -0.53
SCN1A-222	ENST00000642141	AGO4	Q9HCK5	861 aa	Known RBP	11.75	□□□□□ -0.53
SCN1A-222	ENST00000642141	ERAP1	Q9NZ08	941 aa		11.75	□□□□□ -0.53
SCN1A-222	ENST00000642141	SLC9A2	Q9UBY0	812 aa		11.75	□□□□□ -0.53
SCN1A-222	ENST00000642141	EMSY	Q7Z589	1322 aa		11.75	□□□□□ -0.53
SCN1A-222	ENST00000642141	MYO9B	Q13459	2157 aa		11.75	□□□□□ -0.53
SCN1A-222	ENST00000642141	CCDC196	A0A1B0GTZ2	297 aa		11.74	□□□□□ -0.53
SCN1A-222	ENST00000642141	GJB5	O95377	273 aa		11.74	□□□□□ -0.53
SCN1A-222	ENST00000642141	FOS	P01100	380 aa	Predicted RBP	11.74	□□□□□ -0.53
SCN1A-222	ENST00000642141	PDIA3	P30101	505 aa	Known RBP	11.74	□□□□□ -0.53
SCN1A-222	ENST00000642141	ACTR2	P61160	394 aa		11.74	□□□□□ -0.53
SCN1A-222	ENST00000642141	ADAM17	P78536	824 aa		11.74	□□□□□ -0.53
SCN1A-222	ENST00000642141	AKAP17A	Q02040	695 aa	Known RBP	11.74	□□□□□ -0.53
SCN1A-222	ENST00000642141	TMEM62	Q0P6H9	643 aa		11.74	□□□□□ -0.53
SCN1A-222	ENST00000642141	PKN1	Q16512	942 aa		11.74	□□□□□ -0.53
SCN1A-222	ENST00000642141	PLEKHG4	Q58EX7	1191 aa		11.74	□□□□□ -0.53
SCN1A-222	ENST00000642141	MARCH8	Q5T0T0	291 aa		11.74	□□□□□ -0.53
SCN1A-222	ENST00000642141	PPP1R18	Q6NYC8	613 aa		11.74	□□□□□ -0.53
SCN1A-222	ENST00000642141	TRMT1L	Q7Z2T5	733 aa	Known RBP	11.74	□□□□□ -0.53
SCN1A-222	ENST00000642141	DNAJB3	Q8WWF6	145 aa		11.74	□□□□□ -0.53
SCN1A-222	ENST00000642141	SEPT8	Q92599	483 aa		11.74	□□□□□ -0.53
SCN1A-222	ENST00000642141	UPF3B	Q9BZI7	483 aa	Known RBP	11.74	□□□□□ -0.53
SCN1A-222	ENST00000642141	TRPC6	Q9Y210	931 aa		11.74	□□□□□ -0.53
SCN1A-222	ENST00000642141	MTCH2	Q9Y6C9	303 aa		11.74	□□□□□ -0.53
SCN1A-222	ENST00000642141	NRCAM	Q92823	1304 aa		11.74	□□□□□ -0.53
SCN1A-222	ENST00000642141	XIRP2	A4UGR9	3374 aa		11.73	□□□□□ -0.53
SCN1A-222	ENST00000642141	FAM86B1	E9PN63	330 aa		11.73	□□□□□ -0.53
SCN1A-222	ENST00000642141	MEIS1	O00470	390 aa		11.73	□□□□□ -0.53
SCN1A-222	ENST00000642141	MAFG	O15525	162 aa		11.73	□□□□□ -0.53
SCN1A-222	ENST00000642141	GTPBP6	O43824	516 aa	Predicted RBP	11.73	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms