RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 ERCC6LQ2NKX8 1250 aa5.47□□□□□ -1.53
SCN1A-218ENST00000640036 CCDC122Q5T0U0 273 aa5.47□□□□□ -1.53
SCN1A-218ENST00000640036 CREB3L3Q68CJ9 461 aa5.47□□□□□ -1.53
SCN1A-218ENST00000640036 BLIDQ8IZY5 108 aa5.47□□□□□ -1.53
SCN1A-218ENST00000640036 ZKSCAN4Q969J2 545 aaPredicted RBP5.47□□□□□ -1.53
SCN1A-218ENST00000640036 EDEM3Q9BZQ6 932 aa5.47□□□□□ -1.53
SCN1A-218ENST00000640036 TNKSO95271 1327 aa5.47□□□□□ -1.53
SCN1A-218ENST00000640036 ALKQ9UM73 1620 aa5.47□□□□□ -1.53
SCN1A-218ENST00000640036 FAM196BA6NMK8 535 aa5.47□□□□□ -1.53
SCN1A-218ENST00000640036 CAND2O75155 1236 aa5.47□□□□□ -1.53
SCN1A-218ENST00000640036 TACC1O75410 805 aa5.47□□□□□ -1.53
SCN1A-218ENST00000640036 GGPS1O95749 300 aa5.47□□□□□ -1.53
SCN1A-218ENST00000640036 EGFRP00533 1210 aa5.47□□□□□ -1.53
SCN1A-218ENST00000640036 ALDH2P05091 517 aa5.47□□□□□ -1.53
SCN1A-218ENST00000640036 ELAVL2Q12926 359 aaKnown RBP5.47□□□□□ -1.53
SCN1A-218ENST00000640036 ANO6Q4KMQ2 910 aa5.47□□□□□ -1.53
SCN1A-218ENST00000640036 ARMC6Q6NXE6 501 aa5.47□□□□□ -1.53
SCN1A-218ENST00000640036 SMIM5Q71RC9 77 aa5.47□□□□□ -1.53
SCN1A-218ENST00000640036 IQGAP1P46940 1657 aa5.47□□□□□ -1.53
SCN1A-218ENST00000640036 ZNF536O15090 1300 aa5.47□□□□□ -1.53
SCN1A-218ENST00000640036 CLDN3O15551 220 aa5.47□□□□□ -1.53
SCN1A-218ENST00000640036 PRR29P0C7W0 189 aa5.47□□□□□ -1.53
SCN1A-218ENST00000640036 ZNF853P0CG23 659 aa5.47□□□□□ -1.53
SCN1A-218ENST00000640036 STAT5BP51692 787 aa5.47□□□□□ -1.53
SCN1A-218ENST00000640036 KCNB1Q14721 858 aa5.47□□□□□ -1.53
SCN1A-218ENST00000640036 ZNF568Q3ZCX4 644 aa5.47□□□□□ -1.53
SCN1A-218ENST00000640036 CEP85Q6P2H3 762 aa5.47□□□□□ -1.53
SCN1A-218ENST00000640036 OR6B3Q8NGW1 331 aa5.47□□□□□ -1.53
SCN1A-218ENST00000640036 NCDNQ9UBB6 729 aa5.47□□□□□ -1.53
SCN1A-218ENST00000640036 OR52Z1P0C646 297 aa5.47□□□□□ -1.53
SCN1A-218ENST00000640036 BACE1P56817 501 aa5.47□□□□□ -1.53
SCN1A-218ENST00000640036 MAP3K7CLP57077 242 aa5.47□□□□□ -1.53
SCN1A-218ENST00000640036 NBPF12Q5TAG4 269 aaPredicted RBP5.47□□□□□ -1.53
SCN1A-218ENST00000640036 GPBP1Q86WP2 473 aa5.47□□□□□ -1.53
SCN1A-218ENST00000640036 SEPT1Q8WYJ6 367 aa5.47□□□□□ -1.53
SCN1A-218ENST00000640036 MRPL9Q9BYD2 267 aaKnown RBP5.47□□□□□ -1.53
SCN1A-218ENST00000640036 NUCKS1Q9H1E3 243 aaKnown RBP5.47□□□□□ -1.53
SCN1A-218ENST00000640036 MYO3AQ8NEV4 1616 aa5.47□□□□□ -1.53
SCN1A-218ENST00000640036 A6NJR5 290 aa5.46□□□□□ -1.53
SCN1A-218ENST00000640036 DYNC1I1O14576 645 aa5.46□□□□□ -1.53
SCN1A-218ENST00000640036 MED7O43513 233 aa5.46□□□□□ -1.53
SCN1A-218ENST00000640036 CABP7Q86V35 215 aa5.46□□□□□ -1.53
SCN1A-218ENST00000640036 PNMA5Q96PV4 448 aa5.46□□□□□ -1.53
SCN1A-218ENST00000640036 SYNJ2BP-COX16A0A087WUM0 186 aa5.46□□□□□ -1.53
SCN1A-218ENST00000640036 OPLAHO14841 1288 aa5.46□□□□□ -1.53
SCN1A-218ENST00000640036 GJB2P29033 226 aa5.46□□□□□ -1.53
SCN1A-218ENST00000640036 PRDX5P30044 214 aa5.46□□□□□ -1.53
SCN1A-218ENST00000640036 CYLC1P35663 651 aaPredicted RBP5.46□□□□□ -1.53
SCN1A-218ENST00000640036 HADHQ16836 314 aaKnown RBP5.46□□□□□ -1.53
SCN1A-218ENST00000640036 ATAT1Q5SQI0 421 aa5.46□□□□□ -1.53
SCN1A-218ENST00000640036 IL31Q6EBC2 164 aa5.46□□□□□ -1.53
SCN1A-218ENST00000640036 FAM43AQ8N2R8 423 aa5.46□□□□□ -1.53
SCN1A-218ENST00000640036 SCFD1Q8WVM8 642 aa5.46□□□□□ -1.53
SCN1A-218ENST00000640036 ZNF560Q96MR9 790 aa5.46□□□□□ -1.53
SCN1A-218ENST00000640036 SLITRK1Q96PX8 696 aa5.46□□□□□ -1.53
SCN1A-218ENST00000640036 TLE6Q9H808 572 aa5.46□□□□□ -1.53
SCN1A-218ENST00000640036 SLC38A10Q9HBR0 1119 aa5.46□□□□□ -1.53
SCN1A-218ENST00000640036 COX16Q9P0S2 106 aa5.46□□□□□ -1.53
SCN1A-218ENST00000640036 GDAQ9Y2T3 454 aa5.46□□□□□ -1.53
SCN1A-218ENST00000640036 CPDO75976 1380 aa5.46□□□□□ -1.53
SCN1A-218ENST00000640036 RPAP1Q9BWH6 1393 aaPredicted RBP5.46□□□□□ -1.53
SCN1A-218ENST00000640036 MCAMP43121 646 aa5.46□□□□□ -1.54
SCN1A-218ENST00000640036 DRP2Q13474 957 aa5.46□□□□□ -1.54
SCN1A-218ENST00000640036 CFAP157Q5JU67 520 aa5.46□□□□□ -1.54
SCN1A-218ENST00000640036 MEI1Q5TIA1 1274 aa5.46□□□□□ -1.54
SCN1A-218ENST00000640036 GIMAP6Q6P9H5 292 aa5.46□□□□□ -1.54
SCN1A-218ENST00000640036 ITIH5Q86UX2 942 aa5.46□□□□□ -1.54
SCN1A-218ENST00000640036 CRACR2AQ9BSW2 395 aa5.46□□□□□ -1.54
SCN1A-218ENST00000640036 CAMTA2O94983 1202 aa5.46□□□□□ -1.54
SCN1A-218ENST00000640036 ZBTB48P10074 688 aaPredicted RBP5.46□□□□□ -1.54
SCN1A-218ENST00000640036 SCG2P13521 617 aa5.46□□□□□ -1.54
SCN1A-218ENST00000640036 SARNPP82979 210 aaKnown RBP5.46□□□□□ -1.54
SCN1A-218ENST00000640036 PLD1Q13393 1074 aa5.46□□□□□ -1.54
SCN1A-218ENST00000640036 SPECC1Q5M775 1068 aa5.46□□□□□ -1.54
SCN1A-218ENST00000640036 GLYCTKQ8IVS8 523 aa5.46□□□□□ -1.54
SCN1A-218ENST00000640036 CCDC127Q96BQ5 260 aa5.46□□□□□ -1.54
SCN1A-218ENST00000640036 TCEANC2Q96MN5 208 aa5.46□□□□□ -1.54
SCN1A-218ENST00000640036 DSCC1Q9BVC3 393 aa5.46□□□□□ -1.54
SCN1A-218ENST00000640036 PUS3Q9BZE2 481 aaKnown RBP5.46□□□□□ -1.54
SCN1A-218ENST00000640036 TSPY26PQ9H489 355 aa5.46□□□□□ -1.54
SCN1A-218ENST00000640036 VCPKMTQ9H867 229 aa5.46□□□□□ -1.54
SCN1A-218ENST00000640036 TFIP11Q9UBB9 837 aaKnown RBP5.46□□□□□ -1.54
SCN1A-218ENST00000640036 TTLL13PA6NNM8 815 aa5.46□□□□□ -1.54
SCN1A-218ENST00000640036 ADORA1P30542 326 aa5.46□□□□□ -1.54
SCN1A-218ENST00000640036 CYP2J2P51589 502 aa5.46□□□□□ -1.54
SCN1A-218ENST00000640036 FBXW4P57775 412 aa5.46□□□□□ -1.54
SCN1A-218ENST00000640036 HERVK_113P62684 666 aa5.46□□□□□ -1.54
SCN1A-218ENST00000640036 IFFO1Q0D2I5 559 aa5.46□□□□□ -1.54
SCN1A-218ENST00000640036 KRT40Q6A162 431 aa5.46□□□□□ -1.54
SCN1A-218ENST00000640036 PSRC1Q6PGN9 363 aaPredicted RBP5.46□□□□□ -1.54
SCN1A-218ENST00000640036 FAM177A1Q8N128 213 aaPredicted RBP5.46□□□□□ -1.54
SCN1A-218ENST00000640036 FAM161BQ96MY7 647 aa5.46□□□□□ -1.54
SCN1A-218ENST00000640036 MTRQ99707 1265 aa5.46□□□□□ -1.54
SCN1A-218ENST00000640036 PCDHB6Q9Y5E3 794 aa5.46□□□□□ -1.54
SCN1A-218ENST00000640036 SPHKAPQ2M3C7 1700 aa5.46□□□□□ -1.54
SCN1A-218ENST00000640036 FLT3LGP49771 235 aa5.46□□□□□ -1.54
SCN1A-218ENST00000640036 TRIM28Q13263 835 aaKnown RBP5.46□□□□□ -1.54
SCN1A-218ENST00000640036 SHDQ96IW2 340 aa5.46□□□□□ -1.54
SCN1A-218ENST00000640036 CHD4Q14839 1912 aa5.46□□□□□ -1.54
SCN1A-218ENST00000640036 SPATA31D1Q6ZQQ2 1576 aa5.45□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms