RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 NDUFA10O95299 355 aa6.2□□□□□ -1.42
SCN1A-216ENST00000637968 GSTT2P0CG29 244 aa6.2□□□□□ -1.42
SCN1A-216ENST00000637968 GSTT2BP0CG30 244 aa6.2□□□□□ -1.42
SCN1A-216ENST00000637968 TATP17735 454 aaPredicted RBP6.2□□□□□ -1.42
SCN1A-216ENST00000637968 IL4RP24394 825 aa6.2□□□□□ -1.42
SCN1A-216ENST00000637968 PTDSS1P48651 473 aaKnown RBP6.2□□□□□ -1.42
SCN1A-216ENST00000637968 RAB15P59190 212 aa6.2□□□□□ -1.42
SCN1A-216ENST00000637968 LSAMPQ13449 338 aa6.2□□□□□ -1.42
SCN1A-216ENST00000637968 BYSLQ13895 437 aaKnown RBP6.2□□□□□ -1.42
SCN1A-216ENST00000637968 RASGRF1Q13972 1273 aa6.2□□□□□ -1.42
SCN1A-216ENST00000637968 PKN1Q16512 942 aa6.2□□□□□ -1.42
SCN1A-216ENST00000637968 FAM47EQ6ZV65 393 aa6.2□□□□□ -1.42
SCN1A-216ENST00000637968 CD302Q8IX05 232 aa6.2□□□□□ -1.42
SCN1A-216ENST00000637968 FMR1NBQ8N0W7 255 aaPredicted RBP6.2□□□□□ -1.42
SCN1A-216ENST00000637968 RIBC1Q8N443 379 aaPredicted RBP6.2□□□□□ -1.42
SCN1A-216ENST00000637968 DCLK2Q8N568 766 aa6.2□□□□□ -1.42
SCN1A-216ENST00000637968 KRI1Q8N9T8 703 aaKnown RBP6.2□□□□□ -1.42
SCN1A-216ENST00000637968 LLPHQ9BRT6 129 aaKnown RBP6.2□□□□□ -1.42
SCN1A-216ENST00000637968 UBAC1Q9BSL1 405 aa6.2□□□□□ -1.42
SCN1A-216ENST00000637968 ZBED2Q9BTP6 218 aa6.2□□□□□ -1.42
SCN1A-216ENST00000637968 FAM129AQ9BZQ8 928 aa6.2□□□□□ -1.42
SCN1A-216ENST00000637968 IRF2BPLQ9H1B7 796 aa6.2□□□□□ -1.42
SCN1A-216ENST00000637968 ZC4H2Q9NQZ6 224 aa6.2□□□□□ -1.42
SCN1A-216ENST00000637968 GGT7Q9UJ14 662 aa6.2□□□□□ -1.42
SCN1A-216ENST00000637968 GTF3C4Q9UKN8 822 aa6.2□□□□□ -1.42
SCN1A-216ENST00000637968 AOX1Q06278 1338 aa6.2□□□□□ -1.42
SCN1A-216ENST00000637968 TCOF1Q13428 1488 aaKnown RBP6.2□□□□□ -1.42
SCN1A-216ENST00000637968 A0A0J9YVX5 310 aa6.2□□□□□ -1.42
SCN1A-216ENST00000637968 B3GALNT1O75752 331 aa6.2□□□□□ -1.42
SCN1A-216ENST00000637968 KRT76Q01546 638 aa6.2□□□□□ -1.42
SCN1A-216ENST00000637968 ZBTB16Q05516 673 aa6.2□□□□□ -1.42
SCN1A-216ENST00000637968 MED21Q13503 144 aa6.2□□□□□ -1.42
SCN1A-216ENST00000637968 CCNJLQ8IV13 435 aa6.2□□□□□ -1.42
SCN1A-216ENST00000637968 KCNH5Q8NCM2 988 aa6.2□□□□□ -1.42
SCN1A-216ENST00000637968 SPATA4Q8NEY3 305 aa6.2□□□□□ -1.42
SCN1A-216ENST00000637968 TNIP2Q8NFZ5 429 aa6.2□□□□□ -1.42
SCN1A-216ENST00000637968 ACMSDQ8TDX5 336 aa6.2□□□□□ -1.42
SCN1A-216ENST00000637968 NAT14Q8WUY8 206 aa6.2□□□□□ -1.42
SCN1A-216ENST00000637968 CLIP3Q96DZ5 547 aa6.2□□□□□ -1.42
SCN1A-216ENST00000637968 FSD1Q9BTV5 496 aa6.2□□□□□ -1.42
SCN1A-216ENST00000637968 ANKRD2Q9GZV1 360 aa6.2□□□□□ -1.42
SCN1A-216ENST00000637968 AS3MTQ9HBK9 375 aa6.2□□□□□ -1.42
SCN1A-216ENST00000637968 DDX18Q9NVP1 670 aaKnown RBP6.2□□□□□ -1.42
SCN1A-216ENST00000637968 MKS1Q9NXB0 559 aa6.2□□□□□ -1.42
SCN1A-216ENST00000637968 SELENONQ9NZV5 590 aa6.2□□□□□ -1.42
SCN1A-216ENST00000637968 CCDC61Q9Y6R9 512 aa6.2□□□□□ -1.42
SCN1A-216ENST00000637968 SETD1BQ9UPS6 1966 aaKnown RBP6.2□□□□□ -1.42
SCN1A-216ENST00000637968 SH3TC1Q8TE82 1336 aa6.2□□□□□ -1.42
SCN1A-216ENST00000637968 ADAMTS12P58397 1594 aa6.2□□□□□ -1.42
SCN1A-216ENST00000637968 OCM2P0CE71 109 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 OCMP0CE72 109 aaPredicted RBP6.19□□□□□ -1.42
SCN1A-216ENST00000637968 PFKFB1P16118 471 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 CCT8P50990 548 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 CCR3P51677 355 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 INHBCP55103 352 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 QPCTQ16769 361 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 CMPK2Q5EBM0 449 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 TMTC4Q5T4D3 741 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 SYDE2Q5VT97 1194 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 SNX30Q5VWJ9 437 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 DENND2CQ68D51 928 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 WAPLQ7Z5K2 1190 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 TRMT44Q8IYL2 757 aaKnown RBP6.19□□□□□ -1.42
SCN1A-216ENST00000637968 SLC7A5P1Q8MH63 180 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 TSEN2Q8NCE0 465 aaKnown RBP6.19□□□□□ -1.42
SCN1A-216ENST00000637968 SLC17A8Q8NDX2 589 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 MGARPQ8TDB4 240 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 SLC35B4Q969S0 331 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 FERMT2Q96AC1 680 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 CCDC138Q96M89 665 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 HAUS8Q9BT25 410 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 CEP44Q9C0F1 390 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 MYPNQ86TC9 1320 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 TCHHQ07283 1943 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 ARPC4-TTLL3A0A0A6YYG9 625 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 LINC00854A0A1B0GVQ3 168 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 LRRC10BA6NIK2 292 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 TTLL13PA6NNM8 815 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 BOLA2-SMG1P6H3BVE0 249 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 JAK2O60674 1132 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 KRT16P08779 473 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 PDGFRBP09619 1106 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 MARCKSP29966 332 aaPredicted RBP6.19□□□□□ -1.42
SCN1A-216ENST00000637968 STX2P32856 288 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 ECE1P42892 770 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 CCNG1P51959 295 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 GEMIN4P57678 1058 aaKnown RBP6.19□□□□□ -1.42
SCN1A-216ENST00000637968 POLR2FP61218 127 aaKnown RBP6.19□□□□□ -1.42
SCN1A-216ENST00000637968 NCALDP61601 193 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 UBXN1Q04323 297 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 KCNA1Q09470 495 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 PNOCQ13519 176 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 NR1D2Q14995 579 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 CEP78Q5JTW2 689 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 C14orf80Q86SX3 495 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 KLHL7Q8IXQ5 586 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 LINS1Q8NG48 757 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 ATP8B4Q8TF62 1192 aa6.19□□□□□ -1.42
SCN1A-216ENST00000637968 SCG3Q8WXD2 468 aaKnown RBP6.19□□□□□ -1.42
SCN1A-216ENST00000637968 CDK19Q9BWU1 502 aa6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms