RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	MIER3	Q7Z3K6	550 aa		13.18	□□□□□ -0.3
CLN6-223	ENST00000637823	TRIML1	Q8N9V2	468 aa		13.18	□□□□□ -0.3
CLN6-223	ENST00000637823	GIMAP8	Q8ND71	665 aa	Predicted RBP	13.18	□□□□□ -0.3
CLN6-223	ENST00000637823	RDM1	Q8NG50	284 aa		13.18	□□□□□ -0.3
CLN6-223	ENST00000637823	LRRC15	Q8TF66	581 aa		13.18	□□□□□ -0.3
CLN6-223	ENST00000637823	LARP4B	Q92615	738 aa	Known RBP	13.18	□□□□□ -0.3
CLN6-223	ENST00000637823	STAM	Q92783	540 aa		13.18	□□□□□ -0.3
CLN6-223	ENST00000637823	CAPNS2	Q96L46	248 aa		13.18	□□□□□ -0.3
CLN6-223	ENST00000637823	ZIC5	Q96T25	663 aa		13.18	□□□□□ -0.3
CLN6-223	ENST00000637823	C7orf25	Q9BPX7	421 aa		13.18	□□□□□ -0.3
CLN6-223	ENST00000637823	RBSN	Q9H1K0	784 aa		13.18	□□□□□ -0.3
CLN6-223	ENST00000637823	SLC5A4	Q9NY91	659 aa		13.18	□□□□□ -0.3
CLN6-223	ENST00000637823	PKD2L1	Q9P0L9	805 aa		13.18	□□□□□ -0.3
CLN6-223	ENST00000637823	DNM3	Q9UQ16	869 aa		13.18	□□□□□ -0.3
CLN6-223	ENST00000637823	POTEB3	A0JP26	581 aa		13.17	□□□□□ -0.3
CLN6-223	ENST00000637823	DDX39A	O00148	427 aa	Known RBP	13.17	□□□□□ -0.3
CLN6-223	ENST00000637823	BIN1	O00499	593 aa		13.17	□□□□□ -0.3
CLN6-223	ENST00000637823	CHMP2A	O43633	222 aa		13.17	□□□□□ -0.3
CLN6-223	ENST00000637823	SLITRK3	O94933	977 aa		13.17	□□□□□ -0.3
CLN6-223	ENST00000637823	MRE11	P49959	708 aa		13.17	□□□□□ -0.3
CLN6-223	ENST00000637823	JAK3	P52333	1124 aa		13.17	□□□□□ -0.3
CLN6-223	ENST00000637823	GRM1	Q13255	1194 aa		13.17	□□□□□ -0.3
CLN6-223	ENST00000637823	CUL4B	Q13620	913 aa		13.17	□□□□□ -0.3
CLN6-223	ENST00000637823	MCM6	Q14566	821 aa		13.17	□□□□□ -0.3
CLN6-223	ENST00000637823	ANO6	Q4KMQ2	910 aa		13.17	□□□□□ -0.3
CLN6-223	ENST00000637823	L1TD1	Q5T7N2	865 aa	Known RBP	13.17	□□□□□ -0.3
CLN6-223	ENST00000637823	ZNF746	Q6NUN9	644 aa	Predicted RBP	13.17	□□□□□ -0.3
CLN6-223	ENST00000637823	CNNM4	Q6P4Q7	775 aa		13.17	□□□□□ -0.3
CLN6-223	ENST00000637823	POTEB	Q6S5H4	581 aa		13.17	□□□□□ -0.3
CLN6-223	ENST00000637823	SEPT14	Q6ZU15	432 aa		13.17	□□□□□ -0.3
CLN6-223	ENST00000637823	DPP9	Q86TI2	863 aa		13.17	□□□□□ -0.3
CLN6-223	ENST00000637823	DYDC2	Q96IM9	177 aa		13.17	□□□□□ -0.3
CLN6-223	ENST00000637823	NAT10	Q9H0A0	1025 aa	Known RBP	13.17	□□□□□ -0.3
CLN6-223	ENST00000637823	MAN1B1	Q9UKM7	699 aa		13.17	□□□□□ -0.3
CLN6-223	ENST00000637823	AOC2	O75106	756 aa		13.16	□□□□□ -0.3
CLN6-223	ENST00000637823	P4HB	P07237	508 aa	Known RBP	13.16	□□□□□ -0.3
CLN6-223	ENST00000637823	PLA2G4B	P0C869	781 aa		13.16	□□□□□ -0.3
CLN6-223	ENST00000637823	CRHR2	Q13324	411 aa		13.16	□□□□□ -0.3
CLN6-223	ENST00000637823	MORC3	Q14149	939 aa		13.16	□□□□□ -0.3
CLN6-223	ENST00000637823	MORN1	Q5T089	497 aa		13.16	□□□□□ -0.3
CLN6-223	ENST00000637823	KCNK18	Q7Z418	384 aa		13.16	□□□□□ -0.3
CLN6-223	ENST00000637823	TPH2	Q8IWU9	490 aa		13.16	□□□□□ -0.3
CLN6-223	ENST00000637823	SMAP1	Q8IYB5	467 aa	Predicted RBP	13.16	□□□□□ -0.3
CLN6-223	ENST00000637823	CCDC47	Q96A33	483 aa	Known RBP	13.16	□□□□□ -0.3
CLN6-223	ENST00000637823	NACC1	Q96RE7	527 aa		13.16	□□□□□ -0.3
CLN6-223	ENST00000637823	GTPBP4	Q9BZE4	634 aa	Known RBP	13.16	□□□□□ -0.3
CLN6-223	ENST00000637823	BLZF1	Q9H2G9	400 aa		13.16	□□□□□ -0.3
CLN6-223	ENST00000637823	GRPEL1	Q9HAV7	217 aa		13.16	□□□□□ -0.3
CLN6-223	ENST00000637823	RMND1	Q9NWS8	449 aa		13.16	□□□□□ -0.3
CLN6-223	ENST00000637823	RGL1	Q9NZL6	768 aa		13.16	□□□□□ -0.3
CLN6-223	ENST00000637823	SLC9A2	Q9UBY0	812 aa		13.16	□□□□□ -0.3
CLN6-223	ENST00000637823	SAMM50	Q9Y512	469 aa		13.16	□□□□□ -0.3
CLN6-223	ENST00000637823	MYH11	P35749	1972 aa		13.16	□□□□□ -0.3
CLN6-223	ENST00000637823	POTEF	A5A3E0	1075 aa		13.15	□□□□□ -0.3
CLN6-223	ENST00000637823	WDR64	B1ANS9	1081 aa		13.15	□□□□□ -0.3
CLN6-223	ENST00000637823		E9PMD0	336 aa		13.15	□□□□□ -0.3
CLN6-223	ENST00000637823	EYA4	O95677	639 aa		13.15	□□□□□ -0.3
CLN6-223	ENST00000637823	RPN1	P04843	607 aa	Known RBP	13.15	□□□□□ -0.3
CLN6-223	ENST00000637823	CASP1	P29466	404 aa		13.15	□□□□□ -0.3
CLN6-223	ENST00000637823	CYP4A11	Q02928	519 aa		13.15	□□□□□ -0.3
CLN6-223	ENST00000637823	CTTN	Q14247	550 aa	Known RBP	13.15	□□□□□ -0.3
CLN6-223	ENST00000637823	NEDD9	Q14511	834 aa		13.15	□□□□□ -0.3
CLN6-223	ENST00000637823	DHX8	Q14562	1220 aa	Known RBP	13.15	□□□□□ -0.3
CLN6-223	ENST00000637823	KCNB1	Q14721	858 aa		13.15	□□□□□ -0.3
CLN6-223	ENST00000637823	UVSSA	Q2YD98	709 aa		13.15	□□□□□ -0.3
CLN6-223	ENST00000637823	ISM2	Q6H9L7	571 aa		13.15	□□□□□ -0.3
CLN6-223	ENST00000637823	POTEG	Q6S5H5	508 aa		13.15	□□□□□ -0.3
CLN6-223	ENST00000637823	MAMDC4	Q6UXC1	1216 aa		13.15	□□□□□ -0.3
CLN6-223	ENST00000637823	ARMCX2	Q7L311	632 aa		13.15	□□□□□ -0.3
CLN6-223	ENST00000637823	MSL3	Q8N5Y2	521 aa	Known RBP	13.15	□□□□□ -0.3
CLN6-223	ENST00000637823	SYT2	Q8N9I0	419 aa	Predicted RBP	13.15	□□□□□ -0.3
CLN6-223	ENST00000637823	MLKL	Q8NB16	471 aa		13.15	□□□□□ -0.3
CLN6-223	ENST00000637823	FAM200A	Q8TCP9	573 aa		13.15	□□□□□ -0.3
CLN6-223	ENST00000637823	TRIM9	Q9C026	710 aa		13.15	□□□□□ -0.3
CLN6-223	ENST00000637823	DNAJC25	Q9H1X3	360 aa		13.15	□□□□□ -0.3
CLN6-223	ENST00000637823	ZSWIM4	Q9H7M6	989 aa		13.15	□□□□□ -0.3
CLN6-223	ENST00000637823	JPH1	Q9HDC5	661 aa	Predicted RBP	13.15	□□□□□ -0.3
CLN6-223	ENST00000637823	BMP2K	Q9NSY1	1161 aa	Predicted RBP	13.15	□□□□□ -0.3
CLN6-223	ENST00000637823	PCDHA10	Q9Y5I2	948 aa		13.15	□□□□□ -0.3
CLN6-223	ENST00000637823	PVALEF	A0A1B0GWK0	134 aa		13.14	□□□□□ -0.31
CLN6-223	ENST00000637823	MYMK	A6NI61	221 aa		13.14	□□□□□ -0.31
CLN6-223	ENST00000637823	LYPLA2	O95372	231 aa		13.14	□□□□□ -0.31
CLN6-223	ENST00000637823	CCNE2	O96020	404 aa		13.14	□□□□□ -0.31
CLN6-223	ENST00000637823	PSAP	P07602	524 aa		13.14	□□□□□ -0.31
CLN6-223	ENST00000637823	XRCC6	P12956	609 aa	Known RBP eCLIP	13.14	□□□□□ -0.31
CLN6-223	ENST00000637823	MAP2K2	P36507	400 aa		13.14	□□□□□ -0.31
CLN6-223	ENST00000637823	QARS	P47897	775 aa	Known RBP	13.14	□□□□□ -0.31
CLN6-223	ENST00000637823	ZNF165	P49910	485 aa		13.14	□□□□□ -0.31
CLN6-223	ENST00000637823	PSMC6	P62333	389 aa		13.14	□□□□□ -0.31
CLN6-223	ENST00000637823	SP2	Q02086	613 aa		13.14	□□□□□ -0.31
CLN6-223	ENST00000637823	MAP2K5	Q13163	448 aa		13.14	□□□□□ -0.31
CLN6-223	ENST00000637823	CT47A1	Q5JQC4	288 aa	Predicted RBP	13.14	□□□□□ -0.31
CLN6-223	ENST00000637823	MAML3	Q96JK9	1138 aa		13.14	□□□□□ -0.31
CLN6-223	ENST00000637823	BPIFA3	Q9BQP9	254 aa		13.14	□□□□□ -0.31
CLN6-223	ENST00000637823	VTA1	Q9NP79	307 aa		13.14	□□□□□ -0.31
CLN6-223	ENST00000637823	DACH1	Q9UI36	760 aa		13.14	□□□□□ -0.31
CLN6-223	ENST00000637823	SYNGAP1	Q96PV0	1343 aa		13.13	□□□□□ -0.31
CLN6-223	ENST00000637823		A0A087WWV3	80 aa		13.13	□□□□□ -0.31
CLN6-223	ENST00000637823	RBM47	A0AV96	593 aa	Known RBP	13.13	□□□□□ -0.31
CLN6-223	ENST00000637823	KLRC4	O43908	158 aa		13.13	□□□□□ -0.31

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