RNA–Protein interactions for RNA: ENST00000625244.2

SNX1-214, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 324 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-214ENST00000625244 MTMR3Q13615 1198 aa16.29■□□□□ 0.2
SNX1-214ENST00000625244 CELF3Q5SZQ8 465 aaKnown RBP16.29■□□□□ 0.2
SNX1-214ENST00000625244 UBALD2Q8IYN6 164 aa16.29■□□□□ 0.2
SNX1-214ENST00000625244 TUT1Q9H6E5 874 aaKnown RBP16.29■□□□□ 0.2
SNX1-214ENST00000625244 SORCS3Q9UPU3 1222 aa16.29■□□□□ 0.2
SNX1-214ENST00000625244 GGPS1O95749 300 aa16.28■□□□□ 0.2
SNX1-214ENST00000625244 GHRP10912 638 aa16.28■□□□□ 0.2
SNX1-214ENST00000625244 TOP1P11387 765 aaKnown RBP16.28■□□□□ 0.2
SNX1-214ENST00000625244 SP2Q02086 613 aa16.28■□□□□ 0.2
SNX1-214ENST00000625244 ARHGEF16Q5VV41 709 aa16.28■□□□□ 0.2
SNX1-214ENST00000625244 KIAA2013Q8IYS2 634 aa16.28■□□□□ 0.2
SNX1-214ENST00000625244 NEK1Q96PY6 1258 aa16.28■□□□□ 0.2
SNX1-214ENST00000625244 APOL5Q9BWW9 433 aa16.28■□□□□ 0.2
SNX1-214ENST00000625244 SETD4Q9NVD3 440 aa16.28■□□□□ 0.2
SNX1-214ENST00000625244 MYO10Q9HD67 2058 aa16.28■□□□□ 0.2
SNX1-214ENST00000625244 TTC3P53804 2025 aa16.28■□□□□ 0.2
SNX1-214ENST00000625244 MYH7BA7E2Y1 1941 aa16.27■□□□□ 0.2
SNX1-214ENST00000625244 MAP1BP46821 2468 aaKnown RBP16.27■□□□□ 0.2
SNX1-214ENST00000625244 PPFIA3O75145 1194 aa16.27■□□□□ 0.2
SNX1-214ENST00000625244 ZFYP08048 801 aaPredicted RBP16.27■□□□□ 0.2
SNX1-214ENST00000625244 NR3C2P08235 984 aa16.27■□□□□ 0.2
SNX1-214ENST00000625244 ZNF543Q08ER8 600 aa16.27■□□□□ 0.2
SNX1-214ENST00000625244 PUM1Q14671 1186 aaKnown RBP eCLIP16.27■□□□□ 0.2
SNX1-214ENST00000625244 CMTR2Q8IYT2 770 aaKnown RBP16.27■□□□□ 0.2
SNX1-214ENST00000625244 CPVLQ9H3G5 476 aa16.27■□□□□ 0.2
SNX1-214ENST00000625244 EHMT1Q9H9B1 1298 aa16.27■□□□□ 0.2
SNX1-214ENST00000625244 TSHZ2Q9NRE2 1034 aa16.27■□□□□ 0.2
SNX1-214ENST00000625244 SUPT16HQ9Y5B9 1047 aaKnown RBP16.27■□□□□ 0.2
SNX1-214ENST00000625244 SMARCA5O60264 1052 aaPredicted RBP16.26■□□□□ 0.19
SNX1-214ENST00000625244 HMMRO75330 724 aa16.26■□□□□ 0.19
SNX1-214ENST00000625244 LGALS2P05162 132 aa16.26■□□□□ 0.19
SNX1-214ENST00000625244 CLCN5P51795 746 aa16.26■□□□□ 0.19
SNX1-214ENST00000625244 LPIN1Q14693 890 aa16.26■□□□□ 0.19
SNX1-214ENST00000625244 DUSP6Q16828 381 aa16.26■□□□□ 0.19
SNX1-214ENST00000625244 PAN2Q504Q3 1202 aaKnown RBP16.26■□□□□ 0.19
SNX1-214ENST00000625244 SYCE2Q6PIF2 218 aa16.26■□□□□ 0.19
SNX1-214ENST00000625244 MICAL1Q8TDZ2 1067 aa16.26■□□□□ 0.19
SNX1-214ENST00000625244 MFSD1Q9H3U5 465 aa16.26■□□□□ 0.19
SNX1-214ENST00000625244 PXMP2Q9NR77 195 aa16.26■□□□□ 0.19
SNX1-214ENST00000625244 CDH22Q9UJ99 828 aa16.26■□□□□ 0.19
SNX1-214ENST00000625244 OTOGLQ3ZCN5 2332 aa16.26■□□□□ 0.19
SNX1-214ENST00000625244 ATRXP46100 2492 aa16.26■□□□□ 0.19
SNX1-214ENST00000625244 FOXP2O15409 715 aa16.25■□□□□ 0.19
SNX1-214ENST00000625244 UBA1P22314 1058 aaKnown RBP16.25■□□□□ 0.19
SNX1-214ENST00000625244 ADAM17P78536 824 aa16.25■□□□□ 0.19
SNX1-214ENST00000625244 KCNC3Q14003 757 aa16.25■□□□□ 0.19
SNX1-214ENST00000625244 TSHZ3Q63HK5 1081 aa16.25■□□□□ 0.19
SNX1-214ENST00000625244 CWF19L1Q69YN2 538 aaKnown RBP16.25■□□□□ 0.19
SNX1-214ENST00000625244 ANKRD54Q6NXT1 300 aa16.25■□□□□ 0.19
SNX1-214ENST00000625244 CRIPAKQ8N1N5 446 aa16.25■□□□□ 0.19
SNX1-214ENST00000625244 KCNG4Q8TDN1 519 aa16.25■□□□□ 0.19
SNX1-214ENST00000625244 PANK1Q8TE04 598 aa16.25■□□□□ 0.19
SNX1-214ENST00000625244 LINC01599Q8WXQ3 324 aa16.25■□□□□ 0.19
SNX1-214ENST00000625244 GPKOWQ92917 476 aaPredicted RBP eCLIP16.25■□□□□ 0.19
SNX1-214ENST00000625244 MAF1Q9H063 256 aa16.25■□□□□ 0.19
SNX1-214ENST00000625244 BCAS3Q9H6U6 928 aa16.25■□□□□ 0.19
SNX1-214ENST00000625244 ECHDC1Q9NTX5 307 aa16.25■□□□□ 0.19
SNX1-214ENST00000625244 KIAA1671Q9BY89 1806 aa16.24■□□□□ 0.19
SNX1-214ENST00000625244 ABCB11O95342 1321 aa16.24■□□□□ 0.19
SNX1-214ENST00000625244 USP24Q9UPU5 2620 aa16.24■□□□□ 0.19
SNX1-214ENST00000625244 C2CD4DB7Z1M9 353 aa16.24■□□□□ 0.19
SNX1-214ENST00000625244 PI15O43692 258 aa16.24■□□□□ 0.19
SNX1-214ENST00000625244 GOLGA8HP0CJ92 632 aa16.24■□□□□ 0.19
SNX1-214ENST00000625244 SNHG28P0DPA3 235 aa16.24■□□□□ 0.19
SNX1-214ENST00000625244 GNAT1P11488 350 aa16.24■□□□□ 0.19
SNX1-214ENST00000625244 TECP42680 631 aa16.24■□□□□ 0.19
SNX1-214ENST00000625244 MGAT3Q09327 533 aa16.24■□□□□ 0.19
SNX1-214ENST00000625244 ANGPT1Q15389 498 aa16.24■□□□□ 0.19
SNX1-214ENST00000625244 TMEM184AQ6ZMB5 413 aa16.24■□□□□ 0.19
SNX1-214ENST00000625244 CDCA3Q99618 268 aaPredicted RBP16.24■□□□□ 0.19
SNX1-214ENST00000625244 UBA5Q9GZZ9 404 aa16.24■□□□□ 0.19
SNX1-214ENST00000625244 NR2E1Q9Y466 385 aa16.24■□□□□ 0.19
SNX1-214ENST00000625244 ORC4O43929 436 aa16.23■□□□□ 0.19
SNX1-214ENST00000625244 LMNAP02545 664 aaKnown RBP16.23■□□□□ 0.19
SNX1-214ENST00000625244 ASGR2P07307 311 aa16.23■□□□□ 0.19
SNX1-214ENST00000625244 MYCLP12524 364 aaPredicted RBP16.23■□□□□ 0.19
SNX1-214ENST00000625244 GATMP50440 423 aa16.23■□□□□ 0.19
SNX1-214ENST00000625244 ERVFC1P60507 584 aa16.23■□□□□ 0.19
SNX1-214ENST00000625244 ARHGAP4P98171 946 aa16.23■□□□□ 0.19
SNX1-214ENST00000625244 CDC37Q16543 378 aaPredicted RBP16.23■□□□□ 0.19
SNX1-214ENST00000625244 RUFY4Q6ZNE9 571 aa16.23■□□□□ 0.19
SNX1-214ENST00000625244 RTN4RL1Q86UN2 441 aaPredicted RBP16.23■□□□□ 0.19
SNX1-214ENST00000625244 MCF2L2Q86YR7 1114 aa16.23■□□□□ 0.19
SNX1-214ENST00000625244 FLCNQ8NFG4 579 aa16.23■□□□□ 0.19
SNX1-214ENST00000625244 LMBR1Q8WVP7 490 aa16.23■□□□□ 0.19
SNX1-214ENST00000625244 MLXIPQ9HAP2 919 aa16.23■□□□□ 0.19
SNX1-214ENST00000625244 DLL3Q9NYJ7 618 aa16.23■□□□□ 0.19
SNX1-214ENST00000625244 GPR179Q6PRD1 2367 aa16.22■□□□□ 0.19
SNX1-214ENST00000625244 FGRP09769 529 aa16.22■□□□□ 0.19
SNX1-214ENST00000625244 HSPD1P10809 573 aaKnown RBP16.22■□□□□ 0.19
SNX1-214ENST00000625244 KCNV1Q6PIU1 500 aa16.22■□□□□ 0.19
SNX1-214ENST00000625244 CCDC105Q8IYK2 499 aa16.22■□□□□ 0.19
SNX1-214ENST00000625244 ZFP91Q96JP5 570 aaPredicted RBP16.22■□□□□ 0.19
SNX1-214ENST00000625244 PDCD2LQ9BRP1 358 aa16.22■□□□□ 0.19
SNX1-214ENST00000625244 AGO3Q9H9G7 860 aaKnown RBP16.22■□□□□ 0.19
SNX1-214ENST00000625244 ANAPC4Q9UJX5 808 aa16.22■□□□□ 0.19
SNX1-214ENST00000625244 PLXNA4Q9HCM2 1894 aa16.22■□□□□ 0.19
SNX1-214ENST00000625244 UBE3AQ05086 875 aa16.21■□□□□ 0.19
SNX1-214ENST00000625244 RRP12Q5JTH9 1297 aaKnown RBP16.21■□□□□ 0.19
SNX1-214ENST00000625244 FBXO47Q5MNV8 452 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms