RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 ARHGEF35A5YM69 484 aa11.69□□□□□ -0.54
VPS11-208ENST00000621676 MATR3P43243 847 aaKnown RBP eCLIP11.69□□□□□ -0.54
VPS11-208ENST00000621676 HUNKP57058 714 aa11.69□□□□□ -0.54
VPS11-208ENST00000621676 AMPD3Q01432 767 aa11.69□□□□□ -0.54
VPS11-208ENST00000621676 ARSHQ5FYA8 562 aa11.69□□□□□ -0.54
VPS11-208ENST00000621676 SPATA1Q5VX52 437 aa11.69□□□□□ -0.54
VPS11-208ENST00000621676 NLRX1Q86UT6 975 aa11.69□□□□□ -0.54
VPS11-208ENST00000621676 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.69□□□□□ -0.54
VPS11-208ENST00000621676 CNOT6LQ96LI5 555 aaKnown RBP11.69□□□□□ -0.54
VPS11-208ENST00000621676 RANBP17Q9H2T7 1088 aaKnown RBP11.69□□□□□ -0.54
VPS11-208ENST00000621676 KBTBD4Q9NVX7 518 aa11.69□□□□□ -0.54
VPS11-208ENST00000621676 KIAA1551Q9HCM1 1747 aa11.69□□□□□ -0.54
VPS11-208ENST00000621676 CYP11B2P19099 503 aa11.69□□□□□ -0.54
VPS11-208ENST00000621676 SSTR3P32745 418 aaPredicted RBP11.69□□□□□ -0.54
VPS11-208ENST00000621676 SREBF1P36956 1147 aa11.69□□□□□ -0.54
VPS11-208ENST00000621676 USP8P40818 1118 aa11.69□□□□□ -0.54
VPS11-208ENST00000621676 NOVP48745 357 aa11.69□□□□□ -0.54
VPS11-208ENST00000621676 OSTNP61366 133 aa11.69□□□□□ -0.54
VPS11-208ENST00000621676 SYCP1Q15431 976 aa11.69□□□□□ -0.54
VPS11-208ENST00000621676 FILIP1LQ4L180 1135 aa11.69□□□□□ -0.54
VPS11-208ENST00000621676 FAM160B2Q86V87 743 aa11.69□□□□□ -0.54
VPS11-208ENST00000621676 GLG1Q92896 1179 aa11.69□□□□□ -0.54
VPS11-208ENST00000621676 TMEM143Q96AN5 459 aa11.69□□□□□ -0.54
VPS11-208ENST00000621676 CHP1Q99653 195 aa11.69□□□□□ -0.54
VPS11-208ENST00000621676 CEP290O15078 2479 aa11.68□□□□□ -0.54
VPS11-208ENST00000621676 GLTPD2A6NH11 291 aa11.68□□□□□ -0.54
VPS11-208ENST00000621676 POTEB2H3BUK9 544 aa11.68□□□□□ -0.54
VPS11-208ENST00000621676 KRT9P35527 623 aa11.68□□□□□ -0.54
VPS11-208ENST00000621676 PEX3P56589 373 aa11.68□□□□□ -0.54
VPS11-208ENST00000621676 LLGL1Q15334 1064 aa11.68□□□□□ -0.54
VPS11-208ENST00000621676 TKFCQ3LXA3 575 aa11.68□□□□□ -0.54
VPS11-208ENST00000621676 SYT10Q6XYQ8 523 aa11.68□□□□□ -0.54
VPS11-208ENST00000621676 OTOP1Q7RTM1 612 aa11.68□□□□□ -0.54
VPS11-208ENST00000621676 ACRBPQ8NEB7 543 aa11.68□□□□□ -0.54
VPS11-208ENST00000621676 ETNPPLQ8TBG4 499 aa11.68□□□□□ -0.54
VPS11-208ENST00000621676 MTMR8Q96EF0 704 aa11.68□□□□□ -0.54
VPS11-208ENST00000621676 PDCD2LQ9BRP1 358 aa11.68□□□□□ -0.54
VPS11-208ENST00000621676 CCSER1Q9C0I3 900 aa11.68□□□□□ -0.54
VPS11-208ENST00000621676 SEPT9Q9UHD8 586 aaPredicted RBP11.68□□□□□ -0.54
VPS11-208ENST00000621676 DACH1Q9UI36 760 aa11.68□□□□□ -0.54
VPS11-208ENST00000621676 NID2Q14112 1375 aa11.68□□□□□ -0.54
VPS11-208ENST00000621676 ESYT2A0FGR8 921 aa11.68□□□□□ -0.54
VPS11-208ENST00000621676 SLC16A4O15374 487 aa11.68□□□□□ -0.54
VPS11-208ENST00000621676 ACTN1P12814 892 aa11.68□□□□□ -0.54
VPS11-208ENST00000621676 SP2Q02086 613 aa11.68□□□□□ -0.54
VPS11-208ENST00000621676 TOGARAM2Q6ZUX3 1019 aa11.68□□□□□ -0.54
VPS11-208ENST00000621676 ERMNQ8TAM6 284 aa11.68□□□□□ -0.54
VPS11-208ENST00000621676 ZIC5Q96T25 663 aa11.68□□□□□ -0.54
VPS11-208ENST00000621676 TUBGCP2Q9BSJ2 902 aa11.68□□□□□ -0.54
VPS11-208ENST00000621676 TRIM10Q9UDY6 481 aa11.68□□□□□ -0.54
VPS11-208ENST00000621676 ZNF214Q9UL59 606 aaPredicted RBP11.68□□□□□ -0.54
VPS11-208ENST00000621676 ABT1Q9ULW3 272 aaKnown RBP11.68□□□□□ -0.54
VPS11-208ENST00000621676 NRXN2Q9P2S2 1712 aa11.68□□□□□ -0.54
VPS11-208ENST00000621676 TMEM62Q0P6H9 643 aa11.68□□□□□ -0.54
VPS11-208ENST00000621676 PGM5Q15124 567 aa11.68□□□□□ -0.54
VPS11-208ENST00000621676 TMEM132AQ24JP5 1023 aa11.68□□□□□ -0.54
VPS11-208ENST00000621676 SH3RF1Q7Z6J0 888 aa11.68□□□□□ -0.54
VPS11-208ENST00000621676 TMEM130Q8N3G9 435 aa11.68□□□□□ -0.54
VPS11-208ENST00000621676 TEX13BQ9BXU2 312 aa11.68□□□□□ -0.54
VPS11-208ENST00000621676 SEPT11Q9NVA2 429 aaKnown RBP11.68□□□□□ -0.54
VPS11-208ENST00000621676 AFG3L2Q9Y4W6 797 aa11.68□□□□□ -0.54
VPS11-208ENST00000621676 TMCO5BA8MYB1 307 aa11.67□□□□□ -0.54
VPS11-208ENST00000621676 PLEKP08567 350 aaPredicted RBP11.67□□□□□ -0.54
VPS11-208ENST00000621676 TRIM49P0CI25 452 aa11.67□□□□□ -0.54
VPS11-208ENST00000621676 TRIM49CP0CI26 452 aa11.67□□□□□ -0.54
VPS11-208ENST00000621676 GJA5P36382 358 aa11.67□□□□□ -0.54
VPS11-208ENST00000621676 NAP1L1P55209 391 aaKnown RBP11.67□□□□□ -0.54
VPS11-208ENST00000621676 MRPS25P82663 173 aaKnown RBP11.67□□□□□ -0.54
VPS11-208ENST00000621676 ADAM9Q13443 819 aa11.67□□□□□ -0.54
VPS11-208ENST00000621676 FKBP15Q5T1M5 1219 aa11.67□□□□□ -0.54
VPS11-208ENST00000621676 PPP4R3AQ6IN85 833 aa11.67□□□□□ -0.54
VPS11-208ENST00000621676 GJB7Q6PEY0 223 aa11.67□□□□□ -0.54
VPS11-208ENST00000621676 METTL13Q8N6R0 699 aa11.67□□□□□ -0.54
VPS11-208ENST00000621676 ANKRD20A12PQ8NF67 263 aa11.67□□□□□ -0.54
VPS11-208ENST00000621676 CEP170P1Q96L14 293 aa11.67□□□□□ -0.54
VPS11-208ENST00000621676 TEKT3Q9BXF9 490 aa11.67□□□□□ -0.54
VPS11-208ENST00000621676 CHORDC1Q9UHD1 332 aaPredicted RBP11.67□□□□□ -0.54
VPS11-208ENST00000621676 DNAI1Q9UI46 699 aa11.67□□□□□ -0.54
VPS11-208ENST00000621676 ZNF831Q5JPB2 1677 aa11.67□□□□□ -0.54
VPS11-208ENST00000621676 IGLV3-22A0A075B6J6 115 aa11.67□□□□□ -0.54
VPS11-208ENST00000621676 EPHB6O15197 1021 aa11.67□□□□□ -0.54
VPS11-208ENST00000621676 USP11P51784 963 aa11.67□□□□□ -0.54
VPS11-208ENST00000621676 COPB1P53618 953 aaKnown RBP11.67□□□□□ -0.54
VPS11-208ENST00000621676 USP14P54578 494 aa11.67□□□□□ -0.54
VPS11-208ENST00000621676 HERVK_113P62684 666 aa11.67□□□□□ -0.54
VPS11-208ENST00000621676 LRRC71Q8N4P6 559 aa11.67□□□□□ -0.54
VPS11-208ENST00000621676 MTMR14Q8NCE2 650 aa11.67□□□□□ -0.54
VPS11-208ENST00000621676 ENOX1Q8TC92 643 aaKnown RBP11.67□□□□□ -0.54
VPS11-208ENST00000621676 P2RX5Q93086 422 aa11.67□□□□□ -0.54
VPS11-208ENST00000621676 MXRA8Q9BRK3 442 aa11.67□□□□□ -0.54
VPS11-208ENST00000621676 SPTLC3Q9NUV7 552 aa11.67□□□□□ -0.54
VPS11-208ENST00000621676 PLIN4Q96Q06 1357 aa11.67□□□□□ -0.54
VPS11-208ENST00000621676 CCL15-CCL14A0A0B4J2E2 113 aa11.66□□□□□ -0.54
VPS11-208ENST00000621676 CCNE2O96020 404 aa11.66□□□□□ -0.54
VPS11-208ENST00000621676 FOSP01100 380 aaPredicted RBP11.66□□□□□ -0.54
VPS11-208ENST00000621676 CALCAP01258 141 aa11.66□□□□□ -0.54
VPS11-208ENST00000621676 TPM3P06753 285 aa11.66□□□□□ -0.54
VPS11-208ENST00000621676 NR2F2P24468 414 aa11.66□□□□□ -0.54
VPS11-208ENST00000621676 DSG3P32926 999 aa11.66□□□□□ -0.54
VPS11-208ENST00000621676 RAPGEF1Q13905 1077 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms