RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 N4BP1O75113 896 aaKnown RBP5.33□□□□□ -1.56
VPS13D-213ENST00000613099 GRIK3Q13003 919 aa5.33□□□□□ -1.56
VPS13D-213ENST00000613099 BLMHQ13867 455 aa5.33□□□□□ -1.56
VPS13D-213ENST00000613099 CCDC105Q8IYK2 499 aa5.33□□□□□ -1.56
VPS13D-213ENST00000613099 EVPLLA8MZ36 301 aa5.33□□□□□ -1.56
VPS13D-213ENST00000613099 KCNJ18B7U540 433 aa5.33□□□□□ -1.56
VPS13D-213ENST00000613099 HDLBPQ00341 1268 aaKnown RBP5.33□□□□□ -1.56
VPS13D-213ENST00000613099 EIF2B5Q13144 721 aaKnown RBP5.33□□□□□ -1.56
VPS13D-213ENST00000613099 KCNJ12Q14500 433 aa5.33□□□□□ -1.56
VPS13D-213ENST00000613099 NCAPH2Q6IBW4 605 aa5.33□□□□□ -1.56
VPS13D-213ENST00000613099 SDCCAG3Q96C92 435 aa5.33□□□□□ -1.56
VPS13D-213ENST00000613099 DHTKD1Q96HY7 919 aaPredicted RBP5.33□□□□□ -1.56
VPS13D-213ENST00000613099 ZMYND12Q9H0C1 365 aa5.33□□□□□ -1.56
VPS13D-213ENST00000613099 TAF1DQ9H5J8 278 aaPredicted RBP5.33□□□□□ -1.56
VPS13D-213ENST00000613099 SPEF1Q9Y4P9 236 aa5.33□□□□□ -1.56
VPS13D-213ENST00000613099 MAD1L1Q9Y6D9 718 aa5.33□□□□□ -1.56
VPS13D-213ENST00000613099 H3BQF6 201 aa5.33□□□□□ -1.56
VPS13D-213ENST00000613099 S100A9P06702 114 aaKnown RBP5.33□□□□□ -1.56
VPS13D-213ENST00000613099 MDM2Q00987 491 aaPredicted RBP5.33□□□□□ -1.56
VPS13D-213ENST00000613099 NONOQ15233 471 aaKnown RBP eCLIP5.33□□□□□ -1.56
VPS13D-213ENST00000613099 PCNX4Q63HM2 1172 aa5.33□□□□□ -1.56
VPS13D-213ENST00000613099 SYT2Q8N9I0 419 aaPredicted RBP5.33□□□□□ -1.56
VPS13D-213ENST00000613099 NELFBQ8WX92 580 aa5.33□□□□□ -1.56
VPS13D-213ENST00000613099 NOC4LQ9BVI4 516 aaKnown RBP5.33□□□□□ -1.56
VPS13D-213ENST00000613099 AMFRQ9UKV5 643 aa5.33□□□□□ -1.56
VPS13D-213ENST00000613099 AXIN1O15169 862 aa5.33□□□□□ -1.56
VPS13D-213ENST00000613099 HSPA8P11142 646 aaKnown RBP5.33□□□□□ -1.56
VPS13D-213ENST00000613099 EFHD2Q96C19 240 aaPredicted RBP5.33□□□□□ -1.56
VPS13D-213ENST00000613099 RIC8AQ9NPQ8 531 aa5.33□□□□□ -1.56
VPS13D-213ENST00000613099 RPL26L1Q9UNX3 145 aaKnown RBP5.33□□□□□ -1.56
VPS13D-213ENST00000613099 TRIM64CA6NLI5 447 aa5.33□□□□□ -1.56
VPS13D-213ENST00000613099 GNA14O95837 355 aa5.33□□□□□ -1.56
VPS13D-213ENST00000613099 FCHO2Q0JRZ9 810 aa5.33□□□□□ -1.56
VPS13D-213ENST00000613099 PTK2BQ14289 1009 aa5.33□□□□□ -1.56
VPS13D-213ENST00000613099 BEND3Q5T5X7 828 aa5.33□□□□□ -1.56
VPS13D-213ENST00000613099 OTUD5Q96G74 571 aa5.33□□□□□ -1.56
VPS13D-213ENST00000613099 CALML4Q96GE6 196 aa5.33□□□□□ -1.56
VPS13D-213ENST00000613099 PLEKHG4BQ96PX9 1271 aa5.33□□□□□ -1.56
VPS13D-213ENST00000613099 MRPL46Q9H2W6 279 aaKnown RBP5.33□□□□□ -1.56
VPS13D-213ENST00000613099 TRIM17Q9Y577 477 aa5.33□□□□□ -1.56
VPS13D-213ENST00000613099 C9orf84Q5VXU9 1444 aa5.33□□□□□ -1.56
VPS13D-213ENST00000613099 USP27XA6NNY8 438 aa5.33□□□□□ -1.56
VPS13D-213ENST00000613099 TCP11X1B4DZS4 312 aa5.33□□□□□ -1.56
VPS13D-213ENST00000613099 FOXP2O15409 715 aa5.33□□□□□ -1.56
VPS13D-213ENST00000613099 SKAP2O75563 359 aaPredicted RBP5.33□□□□□ -1.56
VPS13D-213ENST00000613099 SMARCA1P28370 1054 aa5.33□□□□□ -1.56
VPS13D-213ENST00000613099 GEN1Q17RS7 908 aa5.33□□□□□ -1.56
VPS13D-213ENST00000613099 TRIM56Q9BRZ2 755 aaKnown RBP5.33□□□□□ -1.56
VPS13D-213ENST00000613099 LZTS1Q9Y250 596 aa5.33□□□□□ -1.56
VPS13D-213ENST00000613099 ABCA9Q8IUA7 1624 aa5.33□□□□□ -1.56
VPS13D-213ENST00000613099 DDIT3P35638 169 aa5.33□□□□□ -1.56
VPS13D-213ENST00000613099 ARMCX5Q6P1M9 558 aa5.33□□□□□ -1.56
VPS13D-213ENST00000613099 C11orf57Q6ZUT1 292 aaPredicted RBP5.33□□□□□ -1.56
VPS13D-213ENST00000613099 STX12Q86Y82 276 aa5.33□□□□□ -1.56
VPS13D-213ENST00000613099 STAG2Q8N3U4 1231 aa5.33□□□□□ -1.56
VPS13D-213ENST00000613099 RPGRQ92834 1020 aaKnown RBP5.33□□□□□ -1.56
VPS13D-213ENST00000613099 FMO2Q99518 471 aa5.33□□□□□ -1.56
VPS13D-213ENST00000613099 CTNND2Q9UQB3 1225 aa5.33□□□□□ -1.56
VPS13D-213ENST00000613099 EFCAB6Q5THR3 1501 aa5.33□□□□□ -1.56
VPS13D-213ENST00000613099 MAP3K4Q9Y6R4 1608 aa5.33□□□□□ -1.56
VPS13D-213ENST00000613099 PGRMC1O00264 195 aaKnown RBP5.33□□□□□ -1.56
VPS13D-213ENST00000613099 MAP4P27816 1152 aaKnown RBP5.33□□□□□ -1.56
VPS13D-213ENST00000613099 COPB2P35606 906 aa5.33□□□□□ -1.56
VPS13D-213ENST00000613099 PGM1P36871 562 aa5.33□□□□□ -1.56
VPS13D-213ENST00000613099 INPP1P49441 399 aa5.33□□□□□ -1.56
VPS13D-213ENST00000613099 METAP2P50579 478 aaKnown RBP eCLIP5.33□□□□□ -1.56
VPS13D-213ENST00000613099 RAB27AP51159 221 aa5.33□□□□□ -1.56
VPS13D-213ENST00000613099 CATIPQ7Z7H3 387 aa5.33□□□□□ -1.56
VPS13D-213ENST00000613099 CCDC103Q8IW40 242 aa5.33□□□□□ -1.56
VPS13D-213ENST00000613099 O00370 1275 aa5.33□□□□□ -1.56
VPS13D-213ENST00000613099 PENKP01210 267 aaPredicted RBP5.33□□□□□ -1.56
VPS13D-213ENST00000613099 ELF3P78545 371 aaPredicted RBP5.33□□□□□ -1.56
VPS13D-213ENST00000613099 RBL2Q08999 1139 aa5.33□□□□□ -1.56
VPS13D-213ENST00000613099 ASIC2Q16515 512 aa5.33□□□□□ -1.56
VPS13D-213ENST00000613099 NFRKBQ6P4R8 1299 aa5.33□□□□□ -1.56
VPS13D-213ENST00000613099 C11orf74Q86VG3 221 aa5.33□□□□□ -1.56
VPS13D-213ENST00000613099 ATP8B4Q8TF62 1192 aa5.33□□□□□ -1.56
VPS13D-213ENST00000613099 TUBGCP3Q96CW5 907 aa5.33□□□□□ -1.56
VPS13D-213ENST00000613099 DDX25Q9UHL0 483 aaKnown RBP5.33□□□□□ -1.56
VPS13D-213ENST00000613099 KCNK3O14649 394 aa5.32□□□□□ -1.56
VPS13D-213ENST00000613099 CLPTM1O96005 669 aa5.32□□□□□ -1.56
VPS13D-213ENST00000613099 PYGLP06737 847 aa5.32□□□□□ -1.56
VPS13D-213ENST00000613099 HMOX2P30519 316 aa5.32□□□□□ -1.56
VPS13D-213ENST00000613099 RASA3Q14644 834 aa5.32□□□□□ -1.56
VPS13D-213ENST00000613099 C1orf50Q9BV19 199 aa5.32□□□□□ -1.56
VPS13D-213ENST00000613099 ZHX3Q9H4I2 956 aa5.32□□□□□ -1.56
VPS13D-213ENST00000613099 HMOX1P09601 288 aa5.32□□□□□ -1.56
VPS13D-213ENST00000613099 MCM7P33993 719 aa5.32□□□□□ -1.56
VPS13D-213ENST00000613099 RGS21Q2M5E4 152 aa5.32□□□□□ -1.56
VPS13D-213ENST00000613099 CADPS2Q86UW7 1296 aa5.32□□□□□ -1.56
VPS13D-213ENST00000613099 RNF41Q9H4P4 317 aaPredicted RBP5.32□□□□□ -1.56
VPS13D-213ENST00000613099 CCDC14Q49A88 953 aa5.32□□□□□ -1.56
VPS13D-213ENST00000613099 RILPL1Q5EBL4 403 aa5.32□□□□□ -1.56
VPS13D-213ENST00000613099 CDC37L1Q7L3B6 337 aa5.32□□□□□ -1.56
VPS13D-213ENST00000613099 ASIC3Q9UHC3 531 aa5.32□□□□□ -1.56
VPS13D-213ENST00000613099 M0R2C6 588 aa5.32□□□□□ -1.56
VPS13D-213ENST00000613099 ARHGAP44Q17R89 818 aa5.32□□□□□ -1.56
VPS13D-213ENST00000613099 CENPUQ71F23 418 aa5.32□□□□□ -1.56
VPS13D-213ENST00000613099 VPS37AQ8NEZ2 397 aa5.32□□□□□ -1.56
VPS13D-213ENST00000613099 CNBD2Q96M20 576 aa5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms