RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 MCTP1Q6DN14 999 aa14.46□□□□□ -0.09
UPF1-208ENST00000600012 FBXO11Q86XK2 927 aa14.46□□□□□ -0.09
UPF1-208ENST00000600012 HERC6Q8IVU3 1022 aa14.46□□□□□ -0.09
UPF1-208ENST00000600012 RRP36Q96EU6 259 aaKnown RBP14.46□□□□□ -0.09
UPF1-208ENST00000600012 JMJD4Q9H9V9 463 aa14.46□□□□□ -0.09
UPF1-208ENST00000600012 MTCH2Q9Y6C9 303 aa14.46□□□□□ -0.09
UPF1-208ENST00000600012 SELPP16109 830 aa14.45□□□□□ -0.1
UPF1-208ENST00000600012 TAP1Q03518 808 aa14.45□□□□□ -0.1
UPF1-208ENST00000600012 RBL2Q08999 1139 aa14.45□□□□□ -0.1
UPF1-208ENST00000600012 SKIV2LQ15477 1246 aaKnown RBP14.45□□□□□ -0.1
UPF1-208ENST00000600012 DGKDQ16760 1214 aa14.45□□□□□ -0.1
UPF1-208ENST00000600012 ARHGEF16Q5VV41 709 aa14.45□□□□□ -0.1
UPF1-208ENST00000600012 WWC2Q6AWC2 1192 aa14.45□□□□□ -0.1
UPF1-208ENST00000600012 GDF6Q6KF10 455 aaPredicted RBP14.45□□□□□ -0.1
UPF1-208ENST00000600012 FAM173BQ6P4H8 233 aa14.45□□□□□ -0.1
UPF1-208ENST00000600012 HEATR3Q7Z4Q2 680 aa14.45□□□□□ -0.1
UPF1-208ENST00000600012 KAT2BQ92831 832 aa14.45□□□□□ -0.1
UPF1-208ENST00000600012 EMID1Q96A84 441 aaPredicted RBP14.45□□□□□ -0.1
UPF1-208ENST00000600012 CTAGE1Q96RT6 745 aa14.45□□□□□ -0.1
UPF1-208ENST00000600012 KATNAL1Q9BW62 490 aa14.45□□□□□ -0.1
UPF1-208ENST00000600012 SEC63Q9UGP8 760 aaKnown RBP14.45□□□□□ -0.1
UPF1-208ENST00000600012 STXBP3O00186 592 aa14.44□□□□□ -0.1
UPF1-208ENST00000600012 RFXAPO00287 272 aa14.44□□□□□ -0.1
UPF1-208ENST00000600012 EIF3JO75822 258 aaKnown RBP14.44□□□□□ -0.1
UPF1-208ENST00000600012 BAG4O95429 457 aaKnown RBP14.44□□□□□ -0.1
UPF1-208ENST00000600012 MMP1P03956 469 aa14.44□□□□□ -0.1
UPF1-208ENST00000600012 NR3C2P08235 984 aa14.44□□□□□ -0.1
UPF1-208ENST00000600012 XBP1P17861 261 aa14.44□□□□□ -0.1
UPF1-208ENST00000600012 EIF2AK2P19525 551 aaKnown RBP14.44□□□□□ -0.1
UPF1-208ENST00000600012 TYW1BQ6NUM6 668 aa14.44□□□□□ -0.1
UPF1-208ENST00000600012 LRRC8DQ7L1W4 858 aa14.44□□□□□ -0.1
UPF1-208ENST00000600012 MTMR8Q96EF0 704 aa14.44□□□□□ -0.1
UPF1-208ENST00000600012 AMNQ9BXJ7 453 aa14.44□□□□□ -0.1
UPF1-208ENST00000600012 CERS4Q9HA82 394 aa14.44□□□□□ -0.1
UPF1-208ENST00000600012 PXMP2Q9NR77 195 aa14.44□□□□□ -0.1
UPF1-208ENST00000600012 GTF2IRD1Q9UHL9 959 aa14.44□□□□□ -0.1
UPF1-208ENST00000600012 DDX41Q9UJV9 622 aaKnown RBP14.44□□□□□ -0.1
UPF1-208ENST00000600012 COL4A4P53420 1690 aaPredicted RBP14.44□□□□□ -0.1
UPF1-208ENST00000600012 TRANK1O15050 2925 aa14.43□□□□□ -0.1
UPF1-208ENST00000600012 EPOPA6NHQ4 379 aa14.43□□□□□ -0.1
UPF1-208ENST00000600012 TLL1O43897 1013 aa14.43□□□□□ -0.1
UPF1-208ENST00000600012 CFBP00751 764 aa14.43□□□□□ -0.1
UPF1-208ENST00000600012 COL9A1P20849 921 aa14.43□□□□□ -0.1
UPF1-208ENST00000600012 WDR5P61964 334 aaKnown RBP14.43□□□□□ -0.1
UPF1-208ENST00000600012 GHRHRQ02643 423 aa14.43□□□□□ -0.1
UPF1-208ENST00000600012 LAMC2Q13753 1193 aa14.43□□□□□ -0.1
UPF1-208ENST00000600012 CNKSR3Q6P9H4 555 aa14.43□□□□□ -0.1
UPF1-208ENST00000600012 C7orf31Q8N865 590 aa14.43□□□□□ -0.1
UPF1-208ENST00000600012 PPTC7Q8NI37 304 aa14.43□□□□□ -0.1
UPF1-208ENST00000600012 ARNTL2Q8WYA1 636 aa14.43□□□□□ -0.1
UPF1-208ENST00000600012 DHX38Q92620 1227 aaKnown RBP14.43□□□□□ -0.1
UPF1-208ENST00000600012 GBP4Q96PP9 640 aa14.43□□□□□ -0.1
UPF1-208ENST00000600012 PHF20Q9BVI0 1012 aa14.43□□□□□ -0.1
UPF1-208ENST00000600012 MAP3K20Q9NYL2 800 aaKnown RBP14.43□□□□□ -0.1
UPF1-208ENST00000600012 HDAC6Q9UBN7 1215 aa14.43□□□□□ -0.1
UPF1-208ENST00000600012 MRVI1Q9Y6F6 885 aa14.43□□□□□ -0.1
UPF1-208ENST00000600012 BRWD1Q9NSI6 2320 aa14.42□□□□□ -0.1
UPF1-208ENST00000600012 PNMA6FA0A0J9YX94 578 aa14.42□□□□□ -0.1
UPF1-208ENST00000600012 ZBTB5O15062 677 aa14.42□□□□□ -0.1
UPF1-208ENST00000600012 PPP1R11O60927 126 aaPredicted RBP14.42□□□□□ -0.1
UPF1-208ENST00000600012 ARHGEF15O94989 841 aa14.42□□□□□ -0.1
UPF1-208ENST00000600012 F2P00734 622 aa14.42□□□□□ -0.1
UPF1-208ENST00000600012 CXCL10P02778 98 aa14.42□□□□□ -0.1
UPF1-208ENST00000600012 CKBP12277 381 aa14.42□□□□□ -0.1
UPF1-208ENST00000600012 BMP1P13497 986 aa14.42□□□□□ -0.1
UPF1-208ENST00000600012 PSEN2P49810 448 aa14.42□□□□□ -0.1
UPF1-208ENST00000600012 HSD17B4P51659 736 aa14.42□□□□□ -0.1
UPF1-208ENST00000600012 NAPAP54920 295 aa14.42□□□□□ -0.1
UPF1-208ENST00000600012 NLRP5P59047 1200 aa14.42□□□□□ -0.1
UPF1-208ENST00000600012 TFF2Q03403 129 aa14.42□□□□□ -0.1
UPF1-208ENST00000600012 GNL2Q13823 731 aaKnown RBP14.42□□□□□ -0.1
UPF1-208ENST00000600012 GPNMBQ14956 572 aa14.42□□□□□ -0.1
UPF1-208ENST00000600012 DHX37Q8IY37 1157 aaKnown RBP14.42□□□□□ -0.1
UPF1-208ENST00000600012 DIS3L2Q8IYB7 885 aaKnown RBP14.42□□□□□ -0.1
UPF1-208ENST00000600012 OXER1Q8TDS5 423 aa14.42□□□□□ -0.1
UPF1-208ENST00000600012 ZSCAN16Q9H4T2 348 aaPredicted RBP14.42□□□□□ -0.1
UPF1-208ENST00000600012 BARHL2Q9NY43 387 aa14.42□□□□□ -0.1
UPF1-208ENST00000600012 COG5Q9UP83 839 aa14.42□□□□□ -0.1
UPF1-208ENST00000600012 BDP1A6H8Y1 2624 aa14.42□□□□□ -0.1
UPF1-208ENST00000600012 SIP14410 1827 aa14.41□□□□□ -0.1
UPF1-208ENST00000600012 ABHD14A-ACY1A0A1B0GW23 586 aa14.41□□□□□ -0.1
UPF1-208ENST00000600012 BTBD18B2RXH4 712 aa14.41□□□□□ -0.1
UPF1-208ENST00000600012 HAS3O00219 553 aa14.41□□□□□ -0.1
UPF1-208ENST00000600012 OPLAHO14841 1288 aa14.41□□□□□ -0.1
UPF1-208ENST00000600012 ADAMTS3O15072 1205 aa14.41□□□□□ -0.1
UPF1-208ENST00000600012 EFCAB14O75071 495 aa14.41□□□□□ -0.1
UPF1-208ENST00000600012 ZNF286BP0CG31 522 aa14.41□□□□□ -0.1
UPF1-208ENST00000600012 HOXD8P13378 290 aaPredicted RBP14.41□□□□□ -0.1
UPF1-208ENST00000600012 KRT2P35908 639 aa14.41□□□□□ -0.1
UPF1-208ENST00000600012 DNM1Q05193 864 aaKnown RBP14.41□□□□□ -0.1
UPF1-208ENST00000600012 NR5A1Q13285 461 aa14.41□□□□□ -0.1
UPF1-208ENST00000600012 PTK7Q13308 1070 aa14.41□□□□□ -0.1
UPF1-208ENST00000600012 MFSD10Q14728 455 aa14.41□□□□□ -0.1
UPF1-208ENST00000600012 SAFBQ15424 915 aaKnown RBP eCLIP14.41□□□□□ -0.1
UPF1-208ENST00000600012 NPY5RQ15761 445 aa14.41□□□□□ -0.1
UPF1-208ENST00000600012 KIAA0753Q2KHM9 967 aa14.41□□□□□ -0.1
UPF1-208ENST00000600012 KCNV1Q6PIU1 500 aa14.41□□□□□ -0.1
UPF1-208ENST00000600012 SAMD3Q8N6K7 520 aa14.41□□□□□ -0.1
UPF1-208ENST00000600012 CCDC148Q8NFR7 591 aa14.41□□□□□ -0.1
UPF1-208ENST00000600012 PDCD2LQ9BRP1 358 aa14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms