RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 PNOCQ13519 176 aa22.12■■□□□ 1.13
UPF1-207ENST00000599848 PHLDB3Q6NSJ2 640 aa22.12■■□□□ 1.13
UPF1-207ENST00000599848 OTUD7AQ8TE49 926 aaPredicted RBP22.12■■□□□ 1.13
UPF1-207ENST00000599848 ZNF653Q96CK0 615 aa22.12■■□□□ 1.13
UPF1-207ENST00000599848 MAGEB5Q9BZ81 275 aa22.12■■□□□ 1.13
UPF1-207ENST00000599848 SEC31BQ9NQW1 1179 aa22.12■■□□□ 1.13
UPF1-207ENST00000599848 DYRK4Q9NR20 520 aa22.12■■□□□ 1.13
UPF1-207ENST00000599848 ARHGEF5Q12774 1597 aa22.12■■□□□ 1.13
UPF1-207ENST00000599848 Q9H521 79 aa22.12■■□□□ 1.13
UPF1-207ENST00000599848 KLHL14Q9P2G3 628 aa22.12■■□□□ 1.13
UPF1-207ENST00000599848 PMLP29590 882 aa22.12■■□□□ 1.13
UPF1-207ENST00000599848 KLC3Q6P597 504 aa22.12■■□□□ 1.13
UPF1-207ENST00000599848 TOGARAM2Q6ZUX3 1019 aa22.12■■□□□ 1.13
UPF1-207ENST00000599848 CNPY4Q8N129 248 aa22.12■■□□□ 1.13
UPF1-207ENST00000599848 RAB42Q8N4Z0 105 aa22.12■■□□□ 1.13
UPF1-207ENST00000599848 SYMPKQ92797 1274 aaKnown RBP22.12■■□□□ 1.13
UPF1-207ENST00000599848 BTBD18B2RXH4 712 aa22.11■■□□□ 1.13
UPF1-207ENST00000599848 MAN2A1Q16706 1144 aa22.11■■□□□ 1.13
UPF1-207ENST00000599848 SLC16A10Q8TF71 515 aa22.11■■□□□ 1.13
UPF1-207ENST00000599848 ABCA8O94911 1581 aa22.11■■□□□ 1.13
UPF1-207ENST00000599848 PAPOLAP51003 745 aaKnown RBP22.11■■□□□ 1.13
UPF1-207ENST00000599848 MTX1Q13505 466 aa22.11■■□□□ 1.13
UPF1-207ENST00000599848 MYLK4Q86YV6 388 aaPredicted RBP22.11■■□□□ 1.13
UPF1-207ENST00000599848 OR6B3Q8NGW1 331 aa22.11■■□□□ 1.13
UPF1-207ENST00000599848 SRP68Q9UHB9 627 aaKnown RBP22.11■■□□□ 1.13
UPF1-207ENST00000599848 CEP57Q86XR8 500 aa22.11■■□□□ 1.13
UPF1-207ENST00000599848 GH2P01242 217 aa22.11■■□□□ 1.13
UPF1-207ENST00000599848 SNRNP48Q6IEG0 339 aaKnown RBP22.11■■□□□ 1.13
UPF1-207ENST00000599848 SP8Q8IXZ3 490 aa22.11■■□□□ 1.13
UPF1-207ENST00000599848 FBXO18Q8NFZ0 1043 aa22.11■■□□□ 1.13
UPF1-207ENST00000599848 RMDN3Q96TC7 470 aa22.11■■□□□ 1.13
UPF1-207ENST00000599848 DDX41Q9UJV9 622 aaKnown RBP22.11■■□□□ 1.13
UPF1-207ENST00000599848 TMCC1O94876 653 aa22.1■■□□□ 1.13
UPF1-207ENST00000599848 SOX5P35711 763 aa22.1■■□□□ 1.13
UPF1-207ENST00000599848 MMEL1Q495T6 779 aa22.1■■□□□ 1.13
UPF1-207ENST00000599848 APOA5Q6Q788 366 aa22.1■■□□□ 1.13
UPF1-207ENST00000599848 MECOMQ03112 1051 aa22.1■■□□□ 1.13
UPF1-207ENST00000599848 SRGAP2CP0DJJ0 459 aa22.1■■□□□ 1.13
UPF1-207ENST00000599848 PGBD4Q96DM1 585 aa22.1■■□□□ 1.13
UPF1-207ENST00000599848 CABS1Q96KC9 395 aa22.1■■□□□ 1.13
UPF1-207ENST00000599848 MXD3Q9BW11 206 aa22.1■■□□□ 1.13
UPF1-207ENST00000599848 GPBP1L1Q9HC44 474 aaPredicted RBP22.1■■□□□ 1.13
UPF1-207ENST00000599848 ZMYM4Q5VZL5 1548 aa22.1■■□□□ 1.13
UPF1-207ENST00000599848 SH3BGRP55822 239 aaPredicted RBP22.1■■□□□ 1.13
UPF1-207ENST00000599848 TAF1CQ15572 869 aaPredicted RBP22.1■■□□□ 1.13
UPF1-207ENST00000599848 MTMR1Q13613 665 aa22.1■■□□□ 1.13
UPF1-207ENST00000599848 TXNRD1Q16881 649 aa22.1■■□□□ 1.13
UPF1-207ENST00000599848 KDM5AP29375 1690 aaKnown RBP22.09■■□□□ 1.13
UPF1-207ENST00000599848 SGK1O00141 431 aa22.09■■□□□ 1.13
UPF1-207ENST00000599848 RCSD1Q6JBY9 416 aa22.09■■□□□ 1.13
UPF1-207ENST00000599848 P2RX5Q93086 422 aa22.09■■□□□ 1.13
UPF1-207ENST00000599848 LRGUKQ96M69 825 aa22.09■■□□□ 1.13
UPF1-207ENST00000599848 ZNF560Q96MR9 790 aa22.09■■□□□ 1.13
UPF1-207ENST00000599848 COL15A1P39059 1388 aa22.09■■□□□ 1.13
UPF1-207ENST00000599848 SART1O43290 800 aaKnown RBP22.09■■□□□ 1.13
UPF1-207ENST00000599848 PDIA3P30101 505 aaKnown RBP22.09■■□□□ 1.13
UPF1-207ENST00000599848 CNOT6LQ96LI5 555 aaKnown RBP22.09■■□□□ 1.13
UPF1-207ENST00000599848 RNF146Q9NTX7 359 aa22.09■■□□□ 1.13
UPF1-207ENST00000599848 CTNNA1P35221 906 aaKnown RBP22.09■■□□□ 1.13
UPF1-207ENST00000599848 SLC16A2P36021 539 aa22.09■■□□□ 1.13
UPF1-207ENST00000599848 AP3M2P53677 418 aa22.09■■□□□ 1.13
UPF1-207ENST00000599848 STAP1Q9ULZ2 295 aa22.09■■□□□ 1.13
UPF1-207ENST00000599848 KRT1P04264 644 aa22.09■■□□□ 1.13
UPF1-207ENST00000599848 DYNLL1P63167 89 aaKnown RBP22.09■■□□□ 1.13
UPF1-207ENST00000599848 TTC30AQ86WT1 665 aa22.09■■□□□ 1.13
UPF1-207ENST00000599848 TRMT44Q8IYL2 757 aaKnown RBP22.09■■□□□ 1.13
UPF1-207ENST00000599848 STXBP3O00186 592 aa22.08■■□□□ 1.13
UPF1-207ENST00000599848 PPFIA2O75334 1257 aa22.08■■□□□ 1.13
UPF1-207ENST00000599848 CYBBP04839 570 aa22.08■■□□□ 1.13
UPF1-207ENST00000599848 LIFRP42702 1097 aa22.08■■□□□ 1.13
UPF1-207ENST00000599848 ARL6IP4Q66PJ3 421 aaKnown RBP22.08■■□□□ 1.13
UPF1-207ENST00000599848 STAP2Q9UGK3 403 aa22.08■■□□□ 1.13
UPF1-207ENST00000599848 ERCC3P19447 782 aa22.08■■□□□ 1.13
UPF1-207ENST00000599848 ADORA1P30542 326 aa22.08■■□□□ 1.13
UPF1-207ENST00000599848 ME3Q16798 604 aa22.08■■□□□ 1.13
UPF1-207ENST00000599848 MTA3Q9BTC8 594 aa22.08■■□□□ 1.13
UPF1-207ENST00000599848 FNDC3AQ9Y2H6 1198 aaKnown RBP22.08■■□□□ 1.13
UPF1-207ENST00000599848 CCDC15Q0P6D6 951 aa22.08■■□□□ 1.12
UPF1-207ENST00000599848 MOSPD1Q9UJG1 213 aa22.08■■□□□ 1.12
UPF1-207ENST00000599848 INPP5FQ9Y2H2 1132 aa22.08■■□□□ 1.12
UPF1-207ENST00000599848 CLGNO14967 610 aa22.08■■□□□ 1.12
UPF1-207ENST00000599848 SFSWAPQ12872 951 aaKnown RBP22.08■■□□□ 1.12
UPF1-207ENST00000599848 E2F5Q15329 346 aa22.08■■□□□ 1.12
UPF1-207ENST00000599848 KCTD6Q8NC69 237 aa22.08■■□□□ 1.12
UPF1-207ENST00000599848 PPME1Q9Y570 386 aa22.08■■□□□ 1.12
UPF1-207ENST00000599848 NVLO15381 856 aaKnown RBP22.07■■□□□ 1.12
UPF1-207ENST00000599848 IFNAR1P17181 557 aa22.07■■□□□ 1.12
UPF1-207ENST00000599848 SAT1P21673 171 aa22.07■■□□□ 1.12
UPF1-207ENST00000599848 PCK1P35558 622 aa22.07■■□□□ 1.12
UPF1-207ENST00000599848 MIPOL1Q8TD10 442 aa22.07■■□□□ 1.12
UPF1-207ENST00000599848 FAM20AQ96MK3 541 aa22.07■■□□□ 1.12
UPF1-207ENST00000599848 TRERF1Q96PN7 1200 aa22.07■■□□□ 1.12
UPF1-207ENST00000599848 PUS3Q9BZE2 481 aaKnown RBP22.07■■□□□ 1.12
UPF1-207ENST00000599848 PCDHB8Q9UN66 801 aa22.07■■□□□ 1.12
UPF1-207ENST00000599848 ORC6Q9Y5N6 252 aa22.07■■□□□ 1.12
UPF1-207ENST00000599848 METP08581 1390 aa22.07■■□□□ 1.12
UPF1-207ENST00000599848 GOLGA8SH3BPF8 625 aa22.07■■□□□ 1.12
UPF1-207ENST00000599848 RALAP11233 206 aa22.07■■□□□ 1.12
UPF1-207ENST00000599848 SNAPC2Q13487 334 aa22.07■■□□□ 1.12
UPF1-207ENST00000599848 GTF3C5Q9Y5Q8 519 aaPredicted RBP22.07■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms