RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 GJA10Q969M2 543 aa22.15■■□□□ 1.14
SHKBP1-221ENST00000599833 GDF15Q99988 308 aa22.15■■□□□ 1.14
SHKBP1-221ENST00000599833 TRMT13Q9NUP7 481 aaKnown RBP22.15■■□□□ 1.14
SHKBP1-221ENST00000599833 CCDC194A0A1B0GVG4 234 aa22.14■■□□□ 1.13
SHKBP1-221ENST00000599833 KIF28PB7ZC32 967 aa22.14■■□□□ 1.13
SHKBP1-221ENST00000599833 ACTR2P61160 394 aa22.14■■□□□ 1.13
SHKBP1-221ENST00000599833 PTPN11Q06124 597 aaPredicted RBP22.14■■□□□ 1.13
SHKBP1-221ENST00000599833 KIAA0753Q2KHM9 967 aa22.14■■□□□ 1.13
SHKBP1-221ENST00000599833 PPP4R3AQ6IN85 833 aa22.14■■□□□ 1.13
SHKBP1-221ENST00000599833 NEK8Q86SG6 692 aa22.14■■□□□ 1.13
SHKBP1-221ENST00000599833 SEPT1Q8WYJ6 367 aa22.14■■□□□ 1.13
SHKBP1-221ENST00000599833 ZNF577Q9BSK1 485 aa22.14■■□□□ 1.13
SHKBP1-221ENST00000599833 GTF2IRD1Q9UHL9 959 aa22.14■■□□□ 1.13
SHKBP1-221ENST00000599833 EMSYQ7Z589 1322 aa22.13■■□□□ 1.13
SHKBP1-221ENST00000599833 H3BRB1 525 aa22.13■■□□□ 1.13
SHKBP1-221ENST00000599833 NOP56O00567 594 aaKnown RBP22.13■■□□□ 1.13
SHKBP1-221ENST00000599833 GJB2P29033 226 aa22.13■■□□□ 1.13
SHKBP1-221ENST00000599833 GDF6Q6KF10 455 aaPredicted RBP22.13■■□□□ 1.13
SHKBP1-221ENST00000599833 ABHD15Q6UXT9 468 aa22.13■■□□□ 1.13
SHKBP1-221ENST00000599833 SNX21Q969T3 373 aa22.13■■□□□ 1.13
SHKBP1-221ENST00000599833 SDF4Q9BRK5 362 aa22.13■■□□□ 1.13
SHKBP1-221ENST00000599833 TUT1Q9H6E5 874 aaKnown RBP22.13■■□□□ 1.13
SHKBP1-221ENST00000599833 KCNMB3Q9NPA1 279 aa22.13■■□□□ 1.13
SHKBP1-221ENST00000599833 HDAC6Q9UBN7 1215 aa22.13■■□□□ 1.13
SHKBP1-221ENST00000599833 TANC1Q9C0D5 1861 aa22.12■■□□□ 1.13
SHKBP1-221ENST00000599833 DCDC2CA8MYV0 355 aa22.12■■□□□ 1.13
SHKBP1-221ENST00000599833 PSMD10O75832 226 aa22.12■■□□□ 1.13
SHKBP1-221ENST00000599833 LETM2Q2VYF4 491 aa22.12■■□□□ 1.13
SHKBP1-221ENST00000599833 HAS1Q92839 578 aa22.12■■□□□ 1.13
SHKBP1-221ENST00000599833 KATNAL1Q9BW62 490 aa22.12■■□□□ 1.13
SHKBP1-221ENST00000599833 UMODL1Q5DID0 1318 aa22.11■■□□□ 1.13
SHKBP1-221ENST00000599833 TRIOBPQ9H2D6 2365 aa22.11■■□□□ 1.13
SHKBP1-221ENST00000599833 U2AF2P26368 475 aaKnown RBP eCLIP22.11■■□□□ 1.13
SHKBP1-221ENST00000599833 MAGEA10P43363 369 aaPredicted RBP22.11■■□□□ 1.13
SHKBP1-221ENST00000599833 ADAM17P78536 824 aa22.11■■□□□ 1.13
SHKBP1-221ENST00000599833 TRIM29Q14134 588 aa22.11■■□□□ 1.13
SHKBP1-221ENST00000599833 UTP14CQ5TAP6 766 aaKnown RBP22.11■■□□□ 1.13
SHKBP1-221ENST00000599833 FAM184AQ8NB25 1140 aa22.11■■□□□ 1.13
SHKBP1-221ENST00000599833 DHX38Q92620 1227 aaKnown RBP22.11■■□□□ 1.13
SHKBP1-221ENST00000599833 VWCEQ96DN2 955 aa22.11■■□□□ 1.13
SHKBP1-221ENST00000599833 FOXP1Q9H334 677 aaPredicted RBP22.11■■□□□ 1.13
SHKBP1-221ENST00000599833 RNPEPQ9H4A4 650 aa22.11■■□□□ 1.13
SHKBP1-221ENST00000599833 PRDM5Q9NQX1 630 aaPredicted RBP22.11■■□□□ 1.13
SHKBP1-221ENST00000599833 TBC1D22BQ9NU19 505 aa22.11■■□□□ 1.13
SHKBP1-221ENST00000599833 TMEM39AQ9NV64 488 aa22.11■■□□□ 1.13
SHKBP1-221ENST00000599833 DDX25Q9UHL0 483 aaKnown RBP22.11■■□□□ 1.13
SHKBP1-221ENST00000599833 MYH9P35579 1960 aaKnown RBP22.1■■□□□ 1.13
SHKBP1-221ENST00000599833 DDX39AO00148 427 aaKnown RBP22.1■■□□□ 1.13
SHKBP1-221ENST00000599833 ZNF200P98182 395 aaPredicted RBP22.1■■□□□ 1.13
SHKBP1-221ENST00000599833 CCDC60Q8IWA6 550 aaPredicted RBP22.1■■□□□ 1.13
SHKBP1-221ENST00000599833 WNT8BQ93098 351 aa22.1■■□□□ 1.13
SHKBP1-221ENST00000599833 RIT2Q99578 217 aa22.1■■□□□ 1.13
SHKBP1-221ENST00000599833 NOC4LQ9BVI4 516 aaKnown RBP22.1■■□□□ 1.13
SHKBP1-221ENST00000599833 BRMS1Q9HCU9 246 aa22.1■■□□□ 1.13
SHKBP1-221ENST00000599833 K7ELQ4 463 aaPredicted RBP22.09■■□□□ 1.13
SHKBP1-221ENST00000599833 SUPT20HL2P0C7V6 817 aa22.09■■□□□ 1.13
SHKBP1-221ENST00000599833 SMIM10L2AP0DMW4 78 aa22.09■■□□□ 1.13
SHKBP1-221ENST00000599833 SMIM10L2BP0DMW5 78 aa22.09■■□□□ 1.13
SHKBP1-221ENST00000599833 CYP2C9P11712 490 aa22.09■■□□□ 1.13
SHKBP1-221ENST00000599833 GCFC2P16383 781 aaKnown RBP22.09■■□□□ 1.13
SHKBP1-221ENST00000599833 ATP4AP20648 1035 aa22.09■■□□□ 1.13
SHKBP1-221ENST00000599833 TRIM71Q2Q1W2 868 aaKnown RBP22.09■■□□□ 1.13
SHKBP1-221ENST00000599833 FAM47CQ5HY64 1035 aa22.09■■□□□ 1.13
SHKBP1-221ENST00000599833 ZNF746Q6NUN9 644 aaPredicted RBP22.09■■□□□ 1.13
SHKBP1-221ENST00000599833 POTEDQ86YR6 584 aa22.09■■□□□ 1.13
SHKBP1-221ENST00000599833 AFAP1L1Q8TED9 768 aa22.09■■□□□ 1.13
SHKBP1-221ENST00000599833 WNT8AQ9H1J5 351 aa22.09■■□□□ 1.13
SHKBP1-221ENST00000599833 VAV3Q9UKW4 847 aa22.09■■□□□ 1.13
SHKBP1-221ENST00000599833 SCN5AQ14524 2016 aa22.09■■□□□ 1.13
SHKBP1-221ENST00000599833 KAT6AQ92794 2004 aa22.09■■□□□ 1.13
SHKBP1-221ENST00000599833 TLR3O15455 904 aaKnown RBP22.08■■□□□ 1.13
SHKBP1-221ENST00000599833 TIMP1P01033 207 aa22.08■■□□□ 1.13
SHKBP1-221ENST00000599833 BMP8BP34820 402 aa22.08■■□□□ 1.13
SHKBP1-221ENST00000599833 MDM2Q00987 491 aaPredicted RBP22.08■■□□□ 1.13
SHKBP1-221ENST00000599833 CHRDL2Q6WN34 429 aa22.08■■□□□ 1.13
SHKBP1-221ENST00000599833 NOSTRINQ8IVI9 506 aa22.08■■□□□ 1.13
SHKBP1-221ENST00000599833 BADQ92934 168 aa22.08■■□□□ 1.13
SHKBP1-221ENST00000599833 UNC45AQ9H3U1 944 aa22.08■■□□□ 1.13
SHKBP1-221ENST00000599833 COLQQ9Y215 455 aaPredicted RBP22.08■■□□□ 1.13
SHKBP1-221ENST00000599833 ZSCAN21Q9Y5A6 473 aaPredicted RBP22.08■■□□□ 1.13
SHKBP1-221ENST00000599833 RBAK-RBAKDNI3L0D1 243 aa22.07■■□□□ 1.12
SHKBP1-221ENST00000599833 CCNT1O60563 726 aaKnown RBP22.07■■□□□ 1.12
SHKBP1-221ENST00000599833 TOB1P50616 345 aaPredicted RBP22.07■■□□□ 1.12
SHKBP1-221ENST00000599833 EPHB4P54760 987 aa22.07■■□□□ 1.12
SHKBP1-221ENST00000599833 CHMP4BP1P59074 171 aa22.07■■□□□ 1.12
SHKBP1-221ENST00000599833 KRT76Q01546 638 aa22.07■■□□□ 1.12
SHKBP1-221ENST00000599833 RBL2Q08999 1139 aa22.07■■□□□ 1.12
SHKBP1-221ENST00000599833 SPIRE1Q08AE8 756 aa22.07■■□□□ 1.12
SHKBP1-221ENST00000599833 LRCH2Q5VUJ6 765 aa22.07■■□□□ 1.12
SHKBP1-221ENST00000599833 PLPPR4Q7Z2D5 763 aa22.07■■□□□ 1.12
SHKBP1-221ENST00000599833 C7orf31Q8N865 590 aa22.07■■□□□ 1.12
SHKBP1-221ENST00000599833 SMARCAD1Q9H4L7 1026 aa22.07■■□□□ 1.12
SHKBP1-221ENST00000599833 SMC3Q9UQE7 1217 aa22.07■■□□□ 1.12
SHKBP1-221ENST00000599833 IGSF9BQ9UPX0 1349 aa22.06■■□□□ 1.12
SHKBP1-221ENST00000599833 TET1Q8NFU7 2136 aa22.06■■□□□ 1.12
SHKBP1-221ENST00000599833 TBX3O15119 743 aa22.06■■□□□ 1.12
SHKBP1-221ENST00000599833 MARK3P27448 753 aa22.06■■□□□ 1.12
SHKBP1-221ENST00000599833 SAFBQ15424 915 aaKnown RBP eCLIP22.06■■□□□ 1.12
SHKBP1-221ENST00000599833 MARCH8Q5T0T0 291 aa22.06■■□□□ 1.12
SHKBP1-221ENST00000599833 TRAF7Q6Q0C0 670 aa22.06■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms