RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 WWC2Q6AWC2 1192 aa11.22□□□□□ -0.61
VRK3-216ENST00000599342 PPP1R18Q6NYC8 613 aa11.22□□□□□ -0.61
VRK3-216ENST00000599342 FAM117BQ6P1L5 589 aa11.22□□□□□ -0.61
VRK3-216ENST00000599342 ZNF713Q8N859 430 aaPredicted RBP11.22□□□□□ -0.61
VRK3-216ENST00000599342 LMBR1Q8WVP7 490 aa11.22□□□□□ -0.61
VRK3-216ENST00000599342 SEPT1Q8WYJ6 367 aa11.22□□□□□ -0.61
VRK3-216ENST00000599342 SEPT8Q92599 483 aa11.22□□□□□ -0.61
VRK3-216ENST00000599342 GLG1Q92896 1179 aa11.22□□□□□ -0.61
VRK3-216ENST00000599342 JADE2Q9NQC1 790 aa11.22□□□□□ -0.61
VRK3-216ENST00000599342 ERAP1Q9NZ08 941 aa11.22□□□□□ -0.61
VRK3-216ENST00000599342 TELO2Q9Y4R8 837 aa11.22□□□□□ -0.61
VRK3-216ENST00000599342 INSL6Q9Y581 213 aa11.22□□□□□ -0.61
VRK3-216ENST00000599342 UBIAD1Q9Y5Z9 338 aa11.22□□□□□ -0.61
VRK3-216ENST00000599342 VCANP13611 3396 aa11.21□□□□□ -0.61
VRK3-216ENST00000599342 ATP9AO75110 1047 aa11.21□□□□□ -0.61
VRK3-216ENST00000599342 FOSP01100 380 aaPredicted RBP11.21□□□□□ -0.61
VRK3-216ENST00000599342 MARK3P27448 753 aa11.21□□□□□ -0.61
VRK3-216ENST00000599342 ADCY7P51828 1080 aa11.21□□□□□ -0.61
VRK3-216ENST00000599342 EXOSC10Q01780 885 aaKnown RBP11.21□□□□□ -0.61
VRK3-216ENST00000599342 PPFIA1Q13136 1202 aa11.21□□□□□ -0.61
VRK3-216ENST00000599342 GRB10Q13322 594 aa11.21□□□□□ -0.61
VRK3-216ENST00000599342 ADCK5Q3MIX3 580 aa11.21□□□□□ -0.61
VRK3-216ENST00000599342 TAF2Q6P1X5 1199 aa11.21□□□□□ -0.61
VRK3-216ENST00000599342 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.21□□□□□ -0.61
VRK3-216ENST00000599342 RSPH3Q86UC2 560 aa11.21□□□□□ -0.61
VRK3-216ENST00000599342 TEX2Q8IWB9 1127 aa11.21□□□□□ -0.61
VRK3-216ENST00000599342 RASEFQ8IZ41 740 aa11.21□□□□□ -0.61
VRK3-216ENST00000599342 ADAMTS19Q8TE59 1207 aa11.21□□□□□ -0.61
VRK3-216ENST00000599342 APBB2Q92870 758 aa11.21□□□□□ -0.61
VRK3-216ENST00000599342 TGS1Q96RS0 853 aaKnown RBP11.21□□□□□ -0.61
VRK3-216ENST00000599342 SDF4Q9BRK5 362 aa11.21□□□□□ -0.61
VRK3-216ENST00000599342 GLT8D2Q9H1C3 349 aa11.21□□□□□ -0.61
VRK3-216ENST00000599342 SMARCAD1Q9H4L7 1026 aa11.21□□□□□ -0.61
VRK3-216ENST00000599342 JPH1Q9HDC5 661 aaPredicted RBP11.21□□□□□ -0.61
VRK3-216ENST00000599342 RIC8AQ9NPQ8 531 aa11.21□□□□□ -0.61
VRK3-216ENST00000599342 MTUS1Q9ULD2 1270 aa11.21□□□□□ -0.61
VRK3-216ENST00000599342 BRPF3Q9ULD4 1205 aa11.21□□□□□ -0.61
VRK3-216ENST00000599342 PTPRSQ13332 1948 aa11.21□□□□□ -0.62
VRK3-216ENST00000599342 DOCK5Q9H7D0 1870 aa11.21□□□□□ -0.62
VRK3-216ENST00000599342 CCDC196A0A1B0GTZ2 297 aa11.2□□□□□ -0.62
VRK3-216ENST00000599342 TNFRSF10AO00220 468 aa11.2□□□□□ -0.62
VRK3-216ENST00000599342 METAP2P50579 478 aaKnown RBP eCLIP11.2□□□□□ -0.62
VRK3-216ENST00000599342 RCAN1P53805 252 aa11.2□□□□□ -0.62
VRK3-216ENST00000599342 ADAM17P78536 824 aa11.2□□□□□ -0.62
VRK3-216ENST00000599342 AP3B2Q13367 1082 aa11.2□□□□□ -0.62
VRK3-216ENST00000599342 GRIK4Q16099 956 aa11.2□□□□□ -0.62
VRK3-216ENST00000599342 KRT40Q6A162 431 aa11.2□□□□□ -0.62
VRK3-216ENST00000599342 SPRED2Q7Z698 418 aa11.2□□□□□ -0.62
VRK3-216ENST00000599342 GDPD5Q8WTR4 605 aa11.2□□□□□ -0.62
VRK3-216ENST00000599342 TNPO1Q92973 898 aaKnown RBP11.2□□□□□ -0.62
VRK3-216ENST00000599342 CCDC136Q96JN2 1154 aa11.2□□□□□ -0.62
VRK3-216ENST00000599342 PGBD1Q96JS3 809 aa11.2□□□□□ -0.62
VRK3-216ENST00000599342 YME1L1Q96TA2 773 aa11.2□□□□□ -0.62
VRK3-216ENST00000599342 MXRA8Q9BRK3 442 aa11.2□□□□□ -0.62
VRK3-216ENST00000599342 ANO3Q9BYT9 981 aa11.2□□□□□ -0.62
VRK3-216ENST00000599342 IFIH1Q9BYX4 1025 aaKnown RBP11.2□□□□□ -0.62
VRK3-216ENST00000599342 AZI2Q9H6S1 392 aa11.2□□□□□ -0.62
VRK3-216ENST00000599342 KCNH7Q9NS40 1196 aa11.2□□□□□ -0.62
VRK3-216ENST00000599342 BARHL2Q9NY43 387 aa11.2□□□□□ -0.62
VRK3-216ENST00000599342 LMCD1Q9NZU5 365 aa11.2□□□□□ -0.62
VRK3-216ENST00000599342 SLC9A2Q9UBY0 812 aa11.2□□□□□ -0.62
VRK3-216ENST00000599342 TUBE1Q9UJT0 475 aa11.2□□□□□ -0.62
VRK3-216ENST00000599342 V9GY48 417 aaPredicted RBP11.2□□□□□ -0.62
VRK3-216ENST00000599342 GSTTP1A0A1W2PQM5 241 aa11.19□□□□□ -0.62
VRK3-216ENST00000599342 LINC01553A4QN01 128 aa11.19□□□□□ -0.62
VRK3-216ENST00000599342 SMCO2A6NFE2 343 aa11.19□□□□□ -0.62
VRK3-216ENST00000599342 STXBP3O00186 592 aa11.19□□□□□ -0.62
VRK3-216ENST00000599342 UPP2O95045 317 aa11.19□□□□□ -0.62
VRK3-216ENST00000599342 RPLP2P05387 115 aaKnown RBP11.19□□□□□ -0.62
VRK3-216ENST00000599342 CDC27P30260 824 aa11.19□□□□□ -0.62
VRK3-216ENST00000599342 ZNF76P36508 570 aa11.19□□□□□ -0.62
VRK3-216ENST00000599342 ERVK-21P61565 698 aa11.19□□□□□ -0.62
VRK3-216ENST00000599342 TYW1BQ6NUM6 668 aa11.19□□□□□ -0.62
VRK3-216ENST00000599342 JAKMIP1Q96N16 626 aaKnown RBP11.19□□□□□ -0.62
VRK3-216ENST00000599342 UHRF1Q96T88 793 aaPredicted RBP11.19□□□□□ -0.62
VRK3-216ENST00000599342 SUGCTQ9HAC7 445 aa11.19□□□□□ -0.62
VRK3-216ENST00000599342 COG5Q9UP83 839 aa11.19□□□□□ -0.62
VRK3-216ENST00000599342 TRPC6Q9Y210 931 aa11.19□□□□□ -0.62
VRK3-216ENST00000599342 COL4A4P53420 1690 aaPredicted RBP11.19□□□□□ -0.62
VRK3-216ENST00000599342 CHD7Q9P2D1 2997 aa11.19□□□□□ -0.62
VRK3-216ENST00000599342 NFASCO94856 1347 aa11.18□□□□□ -0.62
VRK3-216ENST00000599342 CHD9Q3L8U1 2897 aa11.18□□□□□ -0.62
VRK3-216ENST00000599342 RRN3P2A6NIE6 340 aa11.18□□□□□ -0.62
VRK3-216ENST00000599342 M0QZ92 97 aa11.18□□□□□ -0.62
VRK3-216ENST00000599342 LPXNO60711 386 aa11.18□□□□□ -0.62
VRK3-216ENST00000599342 GHRP10912 638 aa11.18□□□□□ -0.62
VRK3-216ENST00000599342 SREBF1P36956 1147 aa11.18□□□□□ -0.62
VRK3-216ENST00000599342 IGBP1P78318 339 aa11.18□□□□□ -0.62
VRK3-216ENST00000599342 HTRA4P83105 476 aaPredicted RBP11.18□□□□□ -0.62
VRK3-216ENST00000599342 TFF2Q03403 129 aa11.18□□□□□ -0.62
VRK3-216ENST00000599342 FUT2Q10981 343 aa11.18□□□□□ -0.62
VRK3-216ENST00000599342 MKRN4PQ13434 485 aaPredicted RBP11.18□□□□□ -0.62
VRK3-216ENST00000599342 CEP55Q53EZ4 464 aa11.18□□□□□ -0.62
VRK3-216ENST00000599342 FAM26DQ5JW98 314 aa11.18□□□□□ -0.62
VRK3-216ENST00000599342 BLOC1S2Q6QNY1 142 aa11.18□□□□□ -0.62
VRK3-216ENST00000599342 RUFY4Q6ZNE9 571 aa11.18□□□□□ -0.62
VRK3-216ENST00000599342 Q6ZUG5 572 aa11.18□□□□□ -0.62
VRK3-216ENST00000599342 RPAINQ86UA6 219 aa11.18□□□□□ -0.62
VRK3-216ENST00000599342 FBXO22Q8NEZ5 403 aa11.18□□□□□ -0.62
VRK3-216ENST00000599342 CCDC12Q8WUD4 166 aaPredicted RBP11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms