RNA–Protein interactions for RNA: ENST00000594759.5

LIG1-207, Transcript of DNA ligase 1, humanhuman

TSL 1 (best)

Gene LIG1, Length 4,102 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-207ENST00000594759 ZBTB17Q13105 803 aa13.35□□□□□ -0.27
LIG1-207ENST00000594759 TCIRG1Q13488 830 aa13.35□□□□□ -0.27
LIG1-207ENST00000594759 ZNF579Q8NAF0 562 aaKnown RBP13.35□□□□□ -0.27
LIG1-207ENST00000594759 SMC1BQ8NDV3 1235 aa13.35□□□□□ -0.27
LIG1-207ENST00000594759 CARD9Q9H257 536 aa13.35□□□□□ -0.27
LIG1-207ENST00000594759 ASIC3Q9UHC3 531 aa13.35□□□□□ -0.27
LIG1-207ENST00000594759 COL3A1P02461 1466 aaPredicted RBP13.35□□□□□ -0.27
LIG1-207ENST00000594759 A0A1W2PQC6 194 aa13.35□□□□□ -0.27
LIG1-207ENST00000594759 LIN7AO14910 233 aaPredicted RBP13.35□□□□□ -0.27
LIG1-207ENST00000594759 Q4G0T1 1027 aa13.35□□□□□ -0.27
LIG1-207ENST00000594759 IFIT1BQ5T764 474 aaKnown RBP13.35□□□□□ -0.27
LIG1-207ENST00000594759 ZSCAN29Q8IWY8 852 aaPredicted RBP13.35□□□□□ -0.27
LIG1-207ENST00000594759 SLC17A8Q8NDX2 589 aa13.35□□□□□ -0.27
LIG1-207ENST00000594759 CASKIN2Q8WXE0 1202 aa13.35□□□□□ -0.27
LIG1-207ENST00000594759 TBC1D5Q92609 795 aa13.35□□□□□ -0.27
LIG1-207ENST00000594759 TATDN2Q93075 761 aa13.35□□□□□ -0.27
LIG1-207ENST00000594759 NLRP3Q96P20 1036 aa13.35□□□□□ -0.27
LIG1-207ENST00000594759 RAB34Q9BZG1 259 aa13.35□□□□□ -0.27
LIG1-207ENST00000594759 UBA5Q9GZZ9 404 aa13.35□□□□□ -0.27
LIG1-207ENST00000594759 THAP9Q9H5L6 903 aa13.35□□□□□ -0.27
LIG1-207ENST00000594759 WDR17Q8IZU2 1322 aa13.35□□□□□ -0.27
LIG1-207ENST00000594759 GRID2IPA4D2P6 1211 aa13.34□□□□□ -0.27
LIG1-207ENST00000594759 ZSCAN5CA6NGD5 496 aaPredicted RBP13.34□□□□□ -0.27
LIG1-207ENST00000594759 GNPATO15228 680 aa13.34□□□□□ -0.27
LIG1-207ENST00000594759 RAD51CO43502 376 aa13.34□□□□□ -0.27
LIG1-207ENST00000594759 MMP1P03956 469 aa13.34□□□□□ -0.27
LIG1-207ENST00000594759 C11orf91Q3C1V1 193 aa13.34□□□□□ -0.27
LIG1-207ENST00000594759 ARL10Q8N8L6 244 aa13.34□□□□□ -0.27
LIG1-207ENST00000594759 PDP2Q9P2J9 529 aa13.34□□□□□ -0.27
LIG1-207ENST00000594759 DEPDC5O75140 1603 aa13.34□□□□□ -0.27
LIG1-207ENST00000594759 UBTFL6P0CB48 400 aaPredicted RBP13.34□□□□□ -0.27
LIG1-207ENST00000594759 ITGB3BPQ13352 177 aaPredicted RBP13.34□□□□□ -0.27
LIG1-207ENST00000594759 EPHA10Q5JZY3 1008 aa13.34□□□□□ -0.27
LIG1-207ENST00000594759 SEL1L2Q5TEA6 688 aa13.34□□□□□ -0.27
LIG1-207ENST00000594759 RPGRQ92834 1020 aaKnown RBP13.34□□□□□ -0.27
LIG1-207ENST00000594759 RPS6KC1Q96S38 1066 aa13.34□□□□□ -0.27
LIG1-207ENST00000594759 FGFR1OP2Q9NVK5 253 aa13.34□□□□□ -0.27
LIG1-207ENST00000594759 DPPA5A6NC42 116 aa13.34□□□□□ -0.27
LIG1-207ENST00000594759 SMNDC1O75940 238 aaKnown RBP eCLIP13.34□□□□□ -0.271e-10■■■□□ 18.1
LIG1-207ENST00000594759 POLR2FP61218 127 aaKnown RBP13.34□□□□□ -0.27
LIG1-207ENST00000594759 AGGF1Q8N302 714 aaeCLIP13.34□□□□□ -0.27
LIG1-207ENST00000594759 MAGEB6Q8N7X4 407 aa13.34□□□□□ -0.27
LIG1-207ENST00000594759 RBM41Q96IZ5 413 aaKnown RBP13.34□□□□□ -0.27
LIG1-207ENST00000594759 SH2D4AQ9H788 454 aa13.34□□□□□ -0.27
LIG1-207ENST00000594759 MKNK2Q9HBH9 465 aa13.34□□□□□ -0.27
LIG1-207ENST00000594759 ANGPTL2Q9UKU9 493 aa13.34□□□□□ -0.27
LIG1-207ENST00000594759 ZBTB1Q9Y2K1 713 aa13.34□□□□□ -0.27
LIG1-207ENST00000594759 AGLP35573 1532 aa13.34□□□□□ -0.27
LIG1-207ENST00000594759 SPATA31A3Q5VYP0 1347 aa13.34□□□□□ -0.27
LIG1-207ENST00000594759 ANKARQ7Z5J8 1434 aa13.34□□□□□ -0.27
LIG1-207ENST00000594759 MAGEA13PA6NCF6 341 aa13.33□□□□□ -0.27
LIG1-207ENST00000594759 TMEM266Q2M3C6 531 aa13.33□□□□□ -0.27
LIG1-207ENST00000594759 MIER3Q7Z3K6 550 aa13.33□□□□□ -0.27
LIG1-207ENST00000594759 DTX3LQ8TDB6 740 aa13.33□□□□□ -0.27
LIG1-207ENST00000594759 PIGOQ8TEQ8 1089 aa13.33□□□□□ -0.27
LIG1-207ENST00000594759 CYTH2Q99418 400 aa13.33□□□□□ -0.27
LIG1-207ENST00000594759 SART1O43290 800 aaKnown RBP13.33□□□□□ -0.28
LIG1-207ENST00000594759 IGKV5-2P06315 115 aa13.33□□□□□ -0.28
LIG1-207ENST00000594759 RFC1P35251 1148 aaPredicted RBP13.33□□□□□ -0.28
LIG1-207ENST00000594759 CETN2P41208 172 aa13.33□□□□□ -0.28
LIG1-207ENST00000594759 PRCPP42785 496 aa13.33□□□□□ -0.28
LIG1-207ENST00000594759 HERVK_113P62684 666 aa13.33□□□□□ -0.28
LIG1-207ENST00000594759 KCNJ2P63252 427 aa13.33□□□□□ -0.28
LIG1-207ENST00000594759 ESR2Q92731 530 aa13.33□□□□□ -0.28
LIG1-207ENST00000594759 EPAS1Q99814 870 aa13.33□□□□□ -0.28
LIG1-207ENST00000594759 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.33□□□□□ -0.286e-6■□□□□ 8.9
LIG1-207ENST00000594759 RABGAP1Q9Y3P9 1069 aa13.33□□□□□ -0.28
LIG1-207ENST00000594759 DCTN3O75935 186 aa13.33□□□□□ -0.28
LIG1-207ENST00000594759 UQCRFS1P1P0C7P4 283 aa13.33□□□□□ -0.28
LIG1-207ENST00000594759 GFPT1Q06210 699 aaPredicted RBP13.33□□□□□ -0.28
LIG1-207ENST00000594759 SFSWAPQ12872 951 aaKnown RBP13.33□□□□□ -0.28
LIG1-207ENST00000594759 RIPK1Q13546 671 aa13.33□□□□□ -0.28
LIG1-207ENST00000594759 GALNT15Q8N3T1 639 aa13.33□□□□□ -0.28
LIG1-207ENST00000594759 PROCA1Q8NCQ7 364 aaPredicted RBP13.33□□□□□ -0.28
LIG1-207ENST00000594759 CUEDC2Q9H467 287 aa13.33□□□□□ -0.28
LIG1-207ENST00000594759 GALNT8Q9NY28 637 aa13.33□□□□□ -0.28
LIG1-207ENST00000594759 AMACRQ9UHK6 382 aa13.33□□□□□ -0.28
LIG1-207ENST00000594759 SLC4A7Q9Y6M7 1214 aa13.33□□□□□ -0.28
LIG1-207ENST00000594759 CAPN6Q9Y6Q1 641 aa13.33□□□□□ -0.28
LIG1-207ENST00000594759 ATP6V1G1O75348 118 aa13.32□□□□□ -0.28
LIG1-207ENST00000594759 LGR5O75473 907 aa13.32□□□□□ -0.28
LIG1-207ENST00000594759 PRLRP16471 622 aa13.32□□□□□ -0.28
LIG1-207ENST00000594759 CACNA2D1P54289 1103 aa13.32□□□□□ -0.28
LIG1-207ENST00000594759 STRN3Q13033 797 aa13.32□□□□□ -0.28
LIG1-207ENST00000594759 CUL4BQ13620 913 aa13.32□□□□□ -0.28
LIG1-207ENST00000594759 QPCTQ16769 361 aa13.32□□□□□ -0.28
LIG1-207ENST00000594759 ZNF653Q96CK0 615 aa13.32□□□□□ -0.28
LIG1-207ENST00000594759 FAM129AQ9BZQ8 928 aa13.32□□□□□ -0.28
LIG1-207ENST00000594759 ISCUQ9H1K1 167 aa13.32□□□□□ -0.28
LIG1-207ENST00000594759 ADAMTS1Q9UHI8 967 aa13.32□□□□□ -0.28
LIG1-207ENST00000594759 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.32□□□□□ -0.28
LIG1-207ENST00000594759 USP31Q70CQ4 1352 aa13.32□□□□□ -0.28
LIG1-207ENST00000594759 ZNF609O15014 1411 aa13.32□□□□□ -0.28
LIG1-207ENST00000594759 ZCCHC18P0CG32 403 aa13.32□□□□□ -0.28
LIG1-207ENST00000594759 PMS2P54278 862 aa13.32□□□□□ -0.28
LIG1-207ENST00000594759 PTPN12Q05209 780 aaKnown RBP13.32□□□□□ -0.28
LIG1-207ENST00000594759 CNBD1Q8NA66 436 aa13.32□□□□□ -0.28
LIG1-207ENST00000594759 LSM14BQ9BX40 385 aaKnown RBP13.32□□□□□ -0.28
LIG1-207ENST00000594759 CRB1P82279 1406 aa13.32□□□□□ -0.28
LIG1-207ENST00000594759 ZC3H13Q5T200 1668 aaKnown RBP13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms