RNA–Protein interactions for RNA: ENST00000592244.1

LIG3-214, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 440 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-214ENST00000592244 PHKBQ93100 1093 aa12.52□□□□□ -0.41
LIG3-214ENST00000592244 GAS2L1Q99501 681 aaPredicted RBP12.52□□□□□ -0.41
LIG3-214ENST00000592244 CDX2Q99626 313 aaPredicted RBP12.52□□□□□ -0.41
LIG3-214ENST00000592244 PBX4Q9BYU1 374 aa12.52□□□□□ -0.41
LIG3-214ENST00000592244 KCNH7Q9NS40 1196 aa12.52□□□□□ -0.41
LIG3-214ENST00000592244 CXXC1Q9P0U4 656 aaPredicted RBP12.52□□□□□ -0.41
LIG3-214ENST00000592244 SLC9A2Q9UBY0 812 aa12.52□□□□□ -0.41
LIG3-214ENST00000592244 PCDHA11Q9Y5I1 949 aa12.52□□□□□ -0.41
LIG3-214ENST00000592244 NFASCO94856 1347 aa12.52□□□□□ -0.41
LIG3-214ENST00000592244 KIAA1217Q5T5P2 1943 aa12.52□□□□□ -0.41
LIG3-214ENST00000592244 ABHD14A-ACY1A0A1B0GW23 586 aa12.51□□□□□ -0.41
LIG3-214ENST00000592244 RSPH10B2B2RC85 870 aa12.51□□□□□ -0.41
LIG3-214ENST00000592244 RSPH10BP0C881 870 aa12.51□□□□□ -0.41
LIG3-214ENST00000592244 FOSL2P15408 326 aa12.51□□□□□ -0.41
LIG3-214ENST00000592244 XBP1P17861 261 aa12.51□□□□□ -0.41
LIG3-214ENST00000592244 CLK2P49760 499 aaKnown RBP12.51□□□□□ -0.41
LIG3-214ENST00000592244 SLC26A2P50443 739 aa12.51□□□□□ -0.41
LIG3-214ENST00000592244 NLRP5P59047 1200 aa12.51□□□□□ -0.41
LIG3-214ENST00000592244 IKBKEQ14164 716 aa12.51□□□□□ -0.41
LIG3-214ENST00000592244 JAKMIP3Q5VZ66 844 aa12.51□□□□□ -0.41
LIG3-214ENST00000592244 TYW1BQ6NUM6 668 aa12.51□□□□□ -0.41
LIG3-214ENST00000592244 TAF2Q6P1X5 1199 aa12.51□□□□□ -0.41
LIG3-214ENST00000592244 GUCD1Q96NT3 240 aa12.51□□□□□ -0.41
LIG3-214ENST00000592244 UPF3BQ9BZI7 483 aaKnown RBP12.51□□□□□ -0.41
LIG3-214ENST00000592244 RNPEPQ9H4A4 650 aa12.51□□□□□ -0.41
LIG3-214ENST00000592244 PKD2L1Q9P0L9 805 aa12.51□□□□□ -0.41
LIG3-214ENST00000592244 RRN3P2A6NIE6 340 aa12.5□□□□□ -0.41
LIG3-214ENST00000592244 MEIS1O00470 390 aa12.5□□□□□ -0.41
LIG3-214ENST00000592244 ATP9AO75110 1047 aa12.5□□□□□ -0.41
LIG3-214ENST00000592244 DEXIO95424 95 aa12.5□□□□□ -0.41
LIG3-214ENST00000592244 CXCL10P02778 98 aa12.5□□□□□ -0.41
LIG3-214ENST00000592244 CYP3A4P08684 503 aa12.5□□□□□ -0.41
LIG3-214ENST00000592244 HOXC8P31273 242 aa12.5□□□□□ -0.41
LIG3-214ENST00000592244 PPFIA1Q13136 1202 aa12.5□□□□□ -0.41
LIG3-214ENST00000592244 TOB2Q14106 344 aaPredicted RBP12.5□□□□□ -0.41
LIG3-214ENST00000592244 FAM160B1Q5W0V3 765 aa12.5□□□□□ -0.41
LIG3-214ENST00000592244 GALNT17Q6IS24 598 aa12.5□□□□□ -0.41
LIG3-214ENST00000592244 PLA2G4DQ86XP0 818 aa12.5□□□□□ -0.41
LIG3-214ENST00000592244 TRIM50Q86XT4 487 aa12.5□□□□□ -0.41
LIG3-214ENST00000592244 DHX38Q92620 1227 aaKnown RBP12.5□□□□□ -0.41
LIG3-214ENST00000592244 PGBD1Q96JS3 809 aa12.5□□□□□ -0.41
LIG3-214ENST00000592244 CTAGE1Q96RT6 745 aa12.5□□□□□ -0.41
LIG3-214ENST00000592244 ZBED2Q9BTP6 218 aa12.5□□□□□ -0.41
LIG3-214ENST00000592244 SLKQ9H2G2 1235 aaPredicted RBP12.5□□□□□ -0.41
LIG3-214ENST00000592244 TTYH1Q9H313 450 aaPredicted RBP12.5□□□□□ -0.41
LIG3-214ENST00000592244 BCAS3Q9H6U6 928 aa12.5□□□□□ -0.41
LIG3-214ENST00000592244 AGO4Q9HCK5 861 aaKnown RBP12.5□□□□□ -0.41
LIG3-214ENST00000592244 TBC1D22BQ9NU19 505 aa12.5□□□□□ -0.41
LIG3-214ENST00000592244 SETD4Q9NVD3 440 aa12.5□□□□□ -0.41
LIG3-214ENST00000592244 GRXCR1A8MXD5 290 aa12.49□□□□□ -0.41
LIG3-214ENST00000592244 TREHO43280 583 aa12.49□□□□□ -0.41
LIG3-214ENST00000592244 LGR5O75473 907 aa12.49□□□□□ -0.41
LIG3-214ENST00000592244 ZNF200P98182 395 aaPredicted RBP12.49□□□□□ -0.41
LIG3-214ENST00000592244 NTRK3Q16288 839 aa12.49□□□□□ -0.41
LIG3-214ENST00000592244 PKN1Q16512 942 aa12.49□□□□□ -0.41
LIG3-214ENST00000592244 TRIM71Q2Q1W2 868 aaKnown RBP12.49□□□□□ -0.41
LIG3-214ENST00000592244 ZNF618Q5T7W0 954 aa12.49□□□□□ -0.41
LIG3-214ENST00000592244 PPP2R2DQ66LE6 453 aa12.49□□□□□ -0.41
LIG3-214ENST00000592244 PLPPR4Q7Z2D5 763 aa12.49□□□□□ -0.41
LIG3-214ENST00000592244 MAFAQ8NHW3 353 aaPredicted RBP12.49□□□□□ -0.41
LIG3-214ENST00000592244 SEPT8Q92599 483 aa12.49□□□□□ -0.41
LIG3-214ENST00000592244 NCOA5Q9HCD5 579 aaKnown RBP12.49□□□□□ -0.41
LIG3-214ENST00000592244 TMEM260Q9NX78 707 aa12.49□□□□□ -0.41
LIG3-214ENST00000592244 LAMA2P24043 3122 aaKnown RBP12.49□□□□□ -0.41
LIG3-214ENST00000592244 GSTTP1A0A1W2PQM5 241 aa12.48□□□□□ -0.41
LIG3-214ENST00000592244 IPO5O00410 1097 aaKnown RBP12.48□□□□□ -0.41
LIG3-214ENST00000592244 BACH1O14867 736 aa12.48□□□□□ -0.41
LIG3-214ENST00000592244 ARP10275 920 aa12.48□□□□□ -0.41
LIG3-214ENST00000592244 MARK3P27448 753 aa12.48□□□□□ -0.41
LIG3-214ENST00000592244 PBX2P40425 430 aa12.48□□□□□ -0.41
LIG3-214ENST00000592244 STAT5BP51692 787 aa12.48□□□□□ -0.41
LIG3-214ENST00000592244 USP11P51784 963 aa12.48□□□□□ -0.41
LIG3-214ENST00000592244 ACTR2P61160 394 aa12.48□□□□□ -0.41
LIG3-214ENST00000592244 STK3Q13188 491 aa12.48□□□□□ -0.41
LIG3-214ENST00000592244 GRIK4Q16099 956 aa12.48□□□□□ -0.41
LIG3-214ENST00000592244 MIS18BP1Q6P0N0 1132 aa12.48□□□□□ -0.41
LIG3-214ENST00000592244 HERC6Q8IVU3 1022 aa12.48□□□□□ -0.41
LIG3-214ENST00000592244 CYP2W1Q8TAV3 490 aa12.48□□□□□ -0.41
LIG3-214ENST00000592244 LMBR1Q8WVP7 490 aa12.48□□□□□ -0.41
LIG3-214ENST00000592244 MYLIPQ8WY64 445 aa12.48□□□□□ -0.41
LIG3-214ENST00000592244 WASF1Q92558 559 aa12.48□□□□□ -0.41
LIG3-214ENST00000592244 ZNF577Q9BSK1 485 aa12.48□□□□□ -0.41
LIG3-214ENST00000592244 NKX2-4Q9H2Z4 354 aa12.48□□□□□ -0.41
LIG3-214ENST00000592244 VPS54Q9P1Q0 977 aa12.48□□□□□ -0.41
LIG3-214ENST00000592244 TUBE1Q9UJT0 475 aa12.48□□□□□ -0.41
LIG3-214ENST00000592244 TRPC6Q9Y210 931 aa12.48□□□□□ -0.41
LIG3-214ENST00000592244 M0QZ92 97 aa12.47□□□□□ -0.41
LIG3-214ENST00000592244 TLL1O43897 1013 aa12.47□□□□□ -0.41
LIG3-214ENST00000592244 NBNO60934 754 aa12.47□□□□□ -0.41
LIG3-214ENST00000592244 AMHP03971 560 aa12.47□□□□□ -0.41
LIG3-214ENST00000592244 KRT76Q01546 638 aa12.47□□□□□ -0.41
LIG3-214ENST00000592244 GRIN2CQ14957 1233 aa12.47□□□□□ -0.41
LIG3-214ENST00000592244 RPAINQ86UA6 219 aa12.47□□□□□ -0.41
LIG3-214ENST00000592244 SMAP1Q8IYB5 467 aaPredicted RBP12.47□□□□□ -0.41
LIG3-214ENST00000592244 APBB2Q92870 758 aa12.47□□□□□ -0.41
LIG3-214ENST00000592244 FAM86B1E9PN63 330 aa12.46□□□□□ -0.41
LIG3-214ENST00000592244 CTSHP09668 335 aa12.46□□□□□ -0.41
LIG3-214ENST00000592244 FAM86B2P0C5J1 330 aa12.46□□□□□ -0.41
LIG3-214ENST00000592244 CIITAP33076 1130 aa12.46□□□□□ -0.41
LIG3-214ENST00000592244 RABGGTBP53611 331 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms