RNA–Protein interactions for RNA: ENST00000590588.5

ZNF540-209, Transcript of zinc finger protein 540, humanhuman

TSL 3

Gene ZNF540, Length 563 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-209ENST00000590588 NEK1Q96PY6 1258 aa12.84□□□□□ -0.35
ZNF540-209ENST00000590588 PXMP2Q9NR77 195 aa12.84□□□□□ -0.35
ZNF540-209ENST00000590588 TOMM22Q9NS69 142 aa12.84□□□□□ -0.35
ZNF540-209ENST00000590588 ANAPC4Q9UJX5 808 aa12.84□□□□□ -0.35
ZNF540-209ENST00000590588 MED19A0JLT2 244 aaPredicted RBP12.83□□□□□ -0.36
ZNF540-209ENST00000590588 SORBS3O60504 671 aa12.83□□□□□ -0.36
ZNF540-209ENST00000590588 FGRP09769 529 aa12.83□□□□□ -0.36
ZNF540-209ENST00000590588 SNHG28P0DPA3 235 aa12.83□□□□□ -0.36
ZNF540-209ENST00000590588 MTMR3Q13615 1198 aa12.83□□□□□ -0.36
ZNF540-209ENST00000590588 GPATCH4Q5T3I0 446 aaKnown RBP12.83□□□□□ -0.36
ZNF540-209ENST00000590588 ASTLQ6HA08 431 aaPredicted RBP12.83□□□□□ -0.36
ZNF540-209ENST00000590588 CMTR2Q8IYT2 770 aaKnown RBP12.83□□□□□ -0.36
ZNF540-209ENST00000590588 KREMEN2Q8NCW0 462 aa12.83□□□□□ -0.36
ZNF540-209ENST00000590588 ATP8B4Q8TF62 1192 aa12.83□□□□□ -0.36
ZNF540-209ENST00000590588 CDCA3Q99618 268 aaPredicted RBP12.83□□□□□ -0.36
ZNF540-209ENST00000590588 USP26Q9BXU7 913 aa12.83□□□□□ -0.36
ZNF540-209ENST00000590588 EHMT1Q9H9B1 1298 aa12.83□□□□□ -0.36
ZNF540-209ENST00000590588 SETD4Q9NVD3 440 aa12.83□□□□□ -0.36
ZNF540-209ENST00000590588 SORCS3Q9UPU3 1222 aa12.83□□□□□ -0.36
ZNF540-209ENST00000590588 MRPL11Q9Y3B7 192 aaKnown RBP12.83□□□□□ -0.36
ZNF540-209ENST00000590588 NR2E1Q9Y466 385 aa12.83□□□□□ -0.36
ZNF540-209ENST00000590588 MRPL42Q9Y6G3 142 aaKnown RBP12.83□□□□□ -0.36
ZNF540-209ENST00000590588 KIAA1217Q5T5P2 1943 aa12.83□□□□□ -0.36
ZNF540-209ENST00000590588 PER2O15055 1255 aa12.82□□□□□ -0.36
ZNF540-209ENST00000590588 SMARCA5O60264 1052 aaPredicted RBP12.82□□□□□ -0.36
ZNF540-209ENST00000590588 KRT37O76014 449 aa12.82□□□□□ -0.36
ZNF540-209ENST00000590588 CHRNA1P02708 482 aa12.82□□□□□ -0.36
ZNF540-209ENST00000590588 LGALS2P05162 132 aa12.82□□□□□ -0.36
ZNF540-209ENST00000590588 SRGAP2BP0DMP2 458 aa12.82□□□□□ -0.36
ZNF540-209ENST00000590588 GHRP10912 638 aa12.82□□□□□ -0.36
ZNF540-209ENST00000590588 MS4A1P11836 297 aa12.82□□□□□ -0.36
ZNF540-209ENST00000590588 MYCLP12524 364 aaPredicted RBP12.82□□□□□ -0.36
ZNF540-209ENST00000590588 CLCN5P51795 746 aa12.82□□□□□ -0.36
ZNF540-209ENST00000590588 SP2Q02086 613 aa12.82□□□□□ -0.36
ZNF540-209ENST00000590588 CDC37Q16543 378 aaPredicted RBP12.82□□□□□ -0.36
ZNF540-209ENST00000590588 UBA5Q9GZZ9 404 aa12.82□□□□□ -0.36
ZNF540-209ENST00000590588 ZBTB40Q9NUA8 1239 aa12.82□□□□□ -0.36
ZNF540-209ENST00000590588 MYH7BA7E2Y1 1941 aa12.82□□□□□ -0.36
ZNF540-209ENST00000590588 PPFIA3O75145 1194 aa12.81□□□□□ -0.36
ZNF540-209ENST00000590588 RGS20O76081 388 aa12.81□□□□□ -0.36
ZNF540-209ENST00000590588 ADAM17P78536 824 aa12.81□□□□□ -0.36
ZNF540-209ENST00000590588 UBE3AQ05086 875 aa12.81□□□□□ -0.36
ZNF540-209ENST00000590588 RRP12Q5JTH9 1297 aaKnown RBP12.81□□□□□ -0.36
ZNF540-209ENST00000590588 ZMYM1Q5SVZ6 1142 aa12.81□□□□□ -0.36
ZNF540-209ENST00000590588 TMEM184AQ6ZMB5 413 aa12.81□□□□□ -0.36
ZNF540-209ENST00000590588 VSIG10LQ86VR7 867 aa12.81□□□□□ -0.36
ZNF540-209ENST00000590588 RMDN1Q96DB5 314 aa12.81□□□□□ -0.36
ZNF540-209ENST00000590588 S1PR5Q9H228 398 aa12.81□□□□□ -0.36
ZNF540-209ENST00000590588 DDX19BQ9UMR2 479 aa12.81□□□□□ -0.36
ZNF540-209ENST00000590588 PCDHGC5Q9Y5F6 944 aa12.81□□□□□ -0.36
ZNF540-209ENST00000590588 NOP56O00567 594 aaKnown RBP12.8□□□□□ -0.36
ZNF540-209ENST00000590588 CFBP00751 764 aa12.8□□□□□ -0.36
ZNF540-209ENST00000590588 GOLGA8HP0CJ92 632 aa12.8□□□□□ -0.36
ZNF540-209ENST00000590588 STAG3L1P0CL83 205 aa12.8□□□□□ -0.36
ZNF540-209ENST00000590588 UBA1P22314 1058 aaKnown RBP12.8□□□□□ -0.36
ZNF540-209ENST00000590588 ARHGAP4P98171 946 aa12.8□□□□□ -0.36
ZNF540-209ENST00000590588 C1QBPQ07021 282 aaKnown RBP12.8□□□□□ -0.36
ZNF540-209ENST00000590588 PUM1Q14671 1186 aaKnown RBP eCLIP12.8□□□□□ -0.36
ZNF540-209ENST00000590588 LPIN1Q14693 890 aa12.8□□□□□ -0.36
ZNF540-209ENST00000590588 DUSP6Q16828 381 aa12.8□□□□□ -0.36
ZNF540-209ENST00000590588 PDE12Q6L8Q7 609 aaKnown RBP12.8□□□□□ -0.36
ZNF540-209ENST00000590588 RSPH3Q86UC2 560 aa12.8□□□□□ -0.36
ZNF540-209ENST00000590588 PDCD2LQ9BRP1 358 aa12.8□□□□□ -0.36
ZNF540-209ENST00000590588 MFSD1Q9H3U5 465 aa12.8□□□□□ -0.36
ZNF540-209ENST00000590588 CHMP4BQ9H444 224 aaKnown RBP12.8□□□□□ -0.36
ZNF540-209ENST00000590588 MAP3K20Q9NYL2 800 aaKnown RBP12.8□□□□□ -0.36
ZNF540-209ENST00000590588 CCDC171Q6TFL3 1326 aa12.8□□□□□ -0.36
ZNF540-209ENST00000590588 NRCAMQ92823 1304 aa12.8□□□□□ -0.36
ZNF540-209ENST00000590588 BRD1O95696 1058 aa12.79□□□□□ -0.36
ZNF540-209ENST00000590588 SP100P23497 879 aaPredicted RBP12.79□□□□□ -0.36
ZNF540-209ENST00000590588 TECP42680 631 aa12.79□□□□□ -0.36
ZNF540-209ENST00000590588 RBM10P98175 930 aaKnown RBP12.79□□□□□ -0.36
ZNF540-209ENST00000590588 TSHZ3Q63HK5 1081 aa12.79□□□□□ -0.36
ZNF540-209ENST00000590588 ANKRD54Q6NXT1 300 aa12.79□□□□□ -0.36
ZNF540-209ENST00000590588 TAF2Q6P1X5 1199 aa12.79□□□□□ -0.36
ZNF540-209ENST00000590588 STOX1Q6ZVD7 989 aa12.79□□□□□ -0.36
ZNF540-209ENST00000590588 NPAS4Q8IUM7 802 aa12.79□□□□□ -0.36
ZNF540-209ENST00000590588 ADGRF4Q8IZF3 695 aa12.79□□□□□ -0.36
ZNF540-209ENST00000590588 CRIPAKQ8N1N5 446 aa12.79□□□□□ -0.36
ZNF540-209ENST00000590588 VN1R2Q8NFZ6 395 aa12.79□□□□□ -0.36
ZNF540-209ENST00000590588 FTHL17Q9BXU8 183 aa12.79□□□□□ -0.36
ZNF540-209ENST00000590588 CPVLQ9H3G5 476 aa12.79□□□□□ -0.36
ZNF540-209ENST00000590588 SEMA4AQ9H3S1 761 aa12.79□□□□□ -0.36
ZNF540-209ENST00000590588 TSHZ2Q9NRE2 1034 aa12.79□□□□□ -0.36
ZNF540-209ENST00000590588 ZNF215Q9UL58 517 aaPredicted RBP12.79□□□□□ -0.36
ZNF540-209ENST00000590588 PCDHB12Q9Y5F1 795 aa12.79□□□□□ -0.36
ZNF540-209ENST00000590588 CACNA1BQ00975 2339 aa12.79□□□□□ -0.36
ZNF540-209ENST00000590588 TTC3P53804 2025 aa12.79□□□□□ -0.36
ZNF540-209ENST00000590588 FOXP2O15409 715 aa12.78□□□□□ -0.36
ZNF540-209ENST00000590588 HOXB8P17481 243 aaPredicted RBP12.78□□□□□ -0.36
ZNF540-209ENST00000590588 HSD17B4P51659 736 aa12.78□□□□□ -0.36
ZNF540-209ENST00000590588 MGAT3Q09327 533 aa12.78□□□□□ -0.36
ZNF540-209ENST00000590588 KCNC3Q14003 757 aa12.78□□□□□ -0.36
ZNF540-209ENST00000590588 PGM5Q15124 567 aa12.78□□□□□ -0.36
ZNF540-209ENST00000590588 PAN2Q504Q3 1202 aaKnown RBP12.78□□□□□ -0.36
ZNF540-209ENST00000590588 FBXO47Q5MNV8 452 aa12.78□□□□□ -0.36
ZNF540-209ENST00000590588 TSHZ1Q6ZSZ6 1077 aa12.78□□□□□ -0.36
ZNF540-209ENST00000590588 RASGRP4Q8TDF6 673 aa12.78□□□□□ -0.36
ZNF540-209ENST00000590588 KCNG4Q8TDN1 519 aa12.78□□□□□ -0.36
ZNF540-209ENST00000590588 LMBR1Q8WVP7 490 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms