RNA–Protein interactions for RNA: ENST00000590499.1

SMAD4-211, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-211ENST00000590499 METAP2P50579 478 aaKnown RBP eCLIP12.9□□□□□ -0.34
SMAD4-211ENST00000590499 ARHGAP1Q07960 439 aa12.9□□□□□ -0.34
SMAD4-211ENST00000590499 FAAP100Q0VG06 881 aa12.9□□□□□ -0.34
SMAD4-211ENST00000590499 TOB2Q14106 344 aaPredicted RBP12.9□□□□□ -0.34
SMAD4-211ENST00000590499 WWC2Q6AWC2 1192 aa12.9□□□□□ -0.34
SMAD4-211ENST00000590499 USP17L6PQ6QN14 398 aa12.9□□□□□ -0.34
SMAD4-211ENST00000590499 SEPT14Q6ZU15 432 aa12.9□□□□□ -0.34
SMAD4-211ENST00000590499 FCHSD1Q86WN1 690 aa12.9□□□□□ -0.34
SMAD4-211ENST00000590499 GPKOWQ92917 476 aaPredicted RBP eCLIP12.9□□□□□ -0.345e-7■■■□□ 17.4
SMAD4-211ENST00000590499 IL17RAQ96F46 866 aa12.9□□□□□ -0.34
SMAD4-211ENST00000590499 DDX41Q9UJV9 622 aaKnown RBP12.9□□□□□ -0.34
SMAD4-211ENST00000590499 DOCK5Q9H7D0 1870 aa12.89□□□□□ -0.35
SMAD4-211ENST00000590499 KIAA0355O15063 1070 aa12.89□□□□□ -0.35
SMAD4-211ENST00000590499 CLTBP09497 229 aa12.89□□□□□ -0.35
SMAD4-211ENST00000590499 MYCLP12524 364 aaPredicted RBP12.89□□□□□ -0.35
SMAD4-211ENST00000590499 ITGB8P26012 769 aa12.89□□□□□ -0.35
SMAD4-211ENST00000590499 CCND2P30279 289 aa12.89□□□□□ -0.35
SMAD4-211ENST00000590499 ADD1P35611 737 aaKnown RBP12.89□□□□□ -0.35
SMAD4-211ENST00000590499 FXR1P51114 621 aaKnown RBP eCLIP12.89□□□□□ -0.35
SMAD4-211ENST00000590499 MRPS9P82933 396 aaKnown RBP12.89□□□□□ -0.35
SMAD4-211ENST00000590499 FGD1P98174 961 aa12.89□□□□□ -0.35
SMAD4-211ENST00000590499 PURAQ00577 322 aaKnown RBP12.89□□□□□ -0.35
SMAD4-211ENST00000590499 LY6KQ17RY6 165 aa12.89□□□□□ -0.35
SMAD4-211ENST00000590499 RNF19BQ6ZMZ0 732 aa12.89□□□□□ -0.35
SMAD4-211ENST00000590499 HEATR3Q7Z4Q2 680 aa12.89□□□□□ -0.35
SMAD4-211ENST00000590499 FAM126BQ8IXS8 530 aa12.89□□□□□ -0.35
SMAD4-211ENST00000590499 PSTPIP2Q9H939 334 aa12.89□□□□□ -0.35
SMAD4-211ENST00000590499 POLR3EQ9NVU0 708 aa12.89□□□□□ -0.35
SMAD4-211ENST00000590499 TBX21Q9UL17 535 aa12.89□□□□□ -0.35
SMAD4-211ENST00000590499 MROH7Q68CQ1 1323 aa12.88□□□□□ -0.35
SMAD4-211ENST00000590499 CCDC196A0A1B0GTZ2 297 aa12.88□□□□□ -0.35
SMAD4-211ENST00000590499 hCG_1984214I3L0E3 225 aa12.88□□□□□ -0.35
SMAD4-211ENST00000590499 STXBP3O00186 592 aa12.88□□□□□ -0.35
SMAD4-211ENST00000590499 GH1P01241 217 aa12.88□□□□□ -0.35
SMAD4-211ENST00000590499 CD4P01730 458 aa12.88□□□□□ -0.35
SMAD4-211ENST00000590499 PDIA3P30101 505 aaKnown RBP12.88□□□□□ -0.35
SMAD4-211ENST00000590499 PSMC6P62333 389 aa12.88□□□□□ -0.35
SMAD4-211ENST00000590499 ITGA7Q13683 1181 aa12.88□□□□□ -0.35
SMAD4-211ENST00000590499 NTRK3Q16288 839 aa12.88□□□□□ -0.35
SMAD4-211ENST00000590499 TEX2Q8IWB9 1127 aa12.88□□□□□ -0.35
SMAD4-211ENST00000590499 ZNF713Q8N859 430 aaPredicted RBP12.88□□□□□ -0.35
SMAD4-211ENST00000590499 SMARCC2Q8TAQ2 1214 aa12.88□□□□□ -0.35
SMAD4-211ENST00000590499 CUL5Q93034 780 aa12.88□□□□□ -0.35
SMAD4-211ENST00000590499 INPP4AQ96PE3 977 aaPredicted RBP12.88□□□□□ -0.35
SMAD4-211ENST00000590499 SEZ6LQ9BYH1 1024 aa12.88□□□□□ -0.35
SMAD4-211ENST00000590499 UPF3BQ9BZI7 483 aaKnown RBP12.88□□□□□ -0.35
SMAD4-211ENST00000590499 PRDM5Q9NQX1 630 aaPredicted RBP12.88□□□□□ -0.35
SMAD4-211ENST00000590499 PRKAG2Q9UGJ0 569 aa12.88□□□□□ -0.35
SMAD4-211ENST00000590499 CYP46A1Q9Y6A2 500 aa12.88□□□□□ -0.35
SMAD4-211ENST00000590499 MRVI1Q9Y6F6 885 aa12.88□□□□□ -0.35
SMAD4-211ENST00000590499 DCDC2CA8MYV0 355 aa12.87□□□□□ -0.35
SMAD4-211ENST00000590499 KPNA6O60684 536 aa12.87□□□□□ -0.35
SMAD4-211ENST00000590499 STAM2O75886 525 aa12.87□□□□□ -0.35
SMAD4-211ENST00000590499 MMP3P08254 477 aa12.87□□□□□ -0.35
SMAD4-211ENST00000590499 HOXD8P13378 290 aaPredicted RBP12.87□□□□□ -0.35
SMAD4-211ENST00000590499 SNRPBP14678 240 aaKnown RBP12.87□□□□□ -0.35
SMAD4-211ENST00000590499 ICAM3P32942 547 aa12.87□□□□□ -0.35
SMAD4-211ENST00000590499 ANAPC15P60006 121 aa12.87□□□□□ -0.35
SMAD4-211ENST00000590499 SP2Q02086 613 aa12.87□□□□□ -0.35
SMAD4-211ENST00000590499 SEMA3FQ13275 785 aa12.87□□□□□ -0.35
SMAD4-211ENST00000590499 UBE2SQ16763 222 aa12.87□□□□□ -0.35
SMAD4-211ENST00000590499 PFKFB3Q16875 520 aaPredicted RBP12.87□□□□□ -0.35
SMAD4-211ENST00000590499 BRDTQ58F21 947 aaPredicted RBP12.87□□□□□ -0.35
SMAD4-211ENST00000590499 PCNX4Q63HM2 1172 aa12.87□□□□□ -0.35
SMAD4-211ENST00000590499 XRRA1Q6P2D8 792 aa12.87□□□□□ -0.35
SMAD4-211ENST00000590499 KCNV1Q6PIU1 500 aa12.87□□□□□ -0.35
SMAD4-211ENST00000590499 AFG1LQ8WV93 481 aa12.87□□□□□ -0.35
SMAD4-211ENST00000590499 VTI1AQ96AJ9 217 aa12.87□□□□□ -0.35
SMAD4-211ENST00000590499 MTG1Q9BT17 334 aaPredicted RBP12.87□□□□□ -0.35
SMAD4-211ENST00000590499 REPIN1Q9BWE0 567 aaKnown RBP12.87□□□□□ -0.35
SMAD4-211ENST00000590499 BARHL2Q9NY43 387 aa12.87□□□□□ -0.35
SMAD4-211ENST00000590499 NAP1L2Q9ULW6 460 aaPredicted RBP12.87□□□□□ -0.35
SMAD4-211ENST00000590499 TERTO14746 1132 aaKnown RBP12.86□□□□□ -0.35
SMAD4-211ENST00000590499 PRPF3O43395 683 aaKnown RBP12.86□□□□□ -0.35
SMAD4-211ENST00000590499 MYL3P08590 195 aa12.86□□□□□ -0.35
SMAD4-211ENST00000590499 TGFB3P10600 412 aa12.86□□□□□ -0.35
SMAD4-211ENST00000590499 UBA1P22314 1058 aaKnown RBP12.86□□□□□ -0.35
SMAD4-211ENST00000590499 PKN1Q16512 942 aa12.86□□□□□ -0.35
SMAD4-211ENST00000590499 MYSM1Q5VVJ2 828 aa12.86□□□□□ -0.35
SMAD4-211ENST00000590499 TDHQ8IZJ6 230 aa12.86□□□□□ -0.35
SMAD4-211ENST00000590499 PPTC7Q8NI37 304 aa12.86□□□□□ -0.35
SMAD4-211ENST00000590499 BADQ92934 168 aa12.86□□□□□ -0.35
SMAD4-211ENST00000590499 LBHD1Q9BQE6 289 aaPredicted RBP12.86□□□□□ -0.35
SMAD4-211ENST00000590499 UBE2OQ9C0C9 1292 aaKnown RBP12.86□□□□□ -0.35
SMAD4-211ENST00000590499 RIC8AQ9NPQ8 531 aa12.86□□□□□ -0.35
SMAD4-211ENST00000590499 PRDM9Q9NQV7 894 aa12.86□□□□□ -0.35
SMAD4-211ENST00000590499 TMEM39AQ9NV64 488 aa12.86□□□□□ -0.35
SMAD4-211ENST00000590499 TTC24A2A3L6 582 aaPredicted RBP12.85□□□□□ -0.35
SMAD4-211ENST00000590499 SPATA31C2B4DYI2 1134 aa12.85□□□□□ -0.35
SMAD4-211ENST00000590499 SCG2P13521 617 aa12.85□□□□□ -0.35
SMAD4-211ENST00000590499 IFNAR1P17181 557 aa12.85□□□□□ -0.35
SMAD4-211ENST00000590499 CLK2P49760 499 aaKnown RBP12.85□□□□□ -0.35
SMAD4-211ENST00000590499 NAPAP54920 295 aa12.85□□□□□ -0.35
SMAD4-211ENST00000590499 USP46P62068 366 aa12.85□□□□□ -0.35
SMAD4-211ENST00000590499 LAMC2Q13753 1193 aa12.85□□□□□ -0.35
SMAD4-211ENST00000590499 GNPTABQ3T906 1256 aa12.85□□□□□ -0.35
SMAD4-211ENST00000590499 CELF3Q5SZQ8 465 aaKnown RBP12.85□□□□□ -0.35
SMAD4-211ENST00000590499 KAT2BQ92831 832 aa12.85□□□□□ -0.35
SMAD4-211ENST00000590499 HLA-CQ95604 372 aa12.85□□□□□ -0.35
SMAD4-211ENST00000590499 ZNF274Q96GC6 653 aaPredicted RBP12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms