RNA–Protein interactions for RNA: ENST00000589117.5

ZNF540-206, Transcript of zinc finger protein 540, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene ZNF540, Length 2,349 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-206ENST00000589117 RAD54LQ92698 747 aa8.21□□□□□ -1.1
ZNF540-206ENST00000589117 NUCKS1Q9H1E3 243 aaKnown RBP8.21□□□□□ -1.1
ZNF540-206ENST00000589117 ACBD3Q9H3P7 528 aa8.21□□□□□ -1.1
ZNF540-206ENST00000589117 KANSL2Q9H9L4 492 aa8.21□□□□□ -1.1
ZNF540-206ENST00000589117 SLC39A2Q9NP94 309 aa8.21□□□□□ -1.1
ZNF540-206ENST00000589117 LUC7LQ9NQ29 371 aaKnown RBP8.21□□□□□ -1.1
ZNF540-206ENST00000589117 C10orf71Q711Q0 1435 aa8.21□□□□□ -1.1
ZNF540-206ENST00000589117 EIF3CLB5ME19 914 aaKnown RBP8.2□□□□□ -1.1
ZNF540-206ENST00000589117 PSMD14O00487 310 aa8.2□□□□□ -1.1
ZNF540-206ENST00000589117 GNA14O95837 355 aa8.2□□□□□ -1.1
ZNF540-206ENST00000589117 TCF3P15923 654 aa8.2□□□□□ -1.1
ZNF540-206ENST00000589117 SLC1A4P43007 532 aa8.2□□□□□ -1.1
ZNF540-206ENST00000589117 EIF6P56537 245 aaKnown RBP8.2□□□□□ -1.1
ZNF540-206ENST00000589117 HDLBPQ00341 1268 aaKnown RBP8.2□□□□□ -1.1
ZNF540-206ENST00000589117 CKAP4Q07065 602 aaKnown RBP8.2□□□□□ -1.1
ZNF540-206ENST00000589117 DDR1Q08345 913 aa8.2□□□□□ -1.1
ZNF540-206ENST00000589117 TERF2Q15554 542 aa8.2□□□□□ -1.1
ZNF540-206ENST00000589117 OCLNQ16625 522 aa8.2□□□□□ -1.1
ZNF540-206ENST00000589117 MAN2A1Q16706 1144 aa8.2□□□□□ -1.1
ZNF540-206ENST00000589117 VWA3BQ502W6 1294 aa8.2□□□□□ -1.1
ZNF540-206ENST00000589117 CCDC65Q8IXS2 484 aa8.2□□□□□ -1.1
ZNF540-206ENST00000589117 SLFN12Q8IYM2 578 aa8.2□□□□□ -1.1
ZNF540-206ENST00000589117 DCAF4Q8WV16 495 aa8.2□□□□□ -1.1
ZNF540-206ENST00000589117 EIF3CQ99613 913 aaKnown RBP8.2□□□□□ -1.1
ZNF540-206ENST00000589117 CHP1Q99653 195 aa8.2□□□□□ -1.1
ZNF540-206ENST00000589117 USB1Q9BQ65 265 aaKnown RBP8.2□□□□□ -1.1
ZNF540-206ENST00000589117 MMTAG2Q9BU76 263 aaKnown RBP8.2□□□□□ -1.1
ZNF540-206ENST00000589117 EDEM3Q9BZQ6 932 aa8.2□□□□□ -1.1
ZNF540-206ENST00000589117 NDST4Q9H3R1 872 aa8.2□□□□□ -1.1
ZNF540-206ENST00000589117 NHEJ1Q9H9Q4 299 aaPredicted RBP8.2□□□□□ -1.1
ZNF540-206ENST00000589117 TMEM260Q9NX78 707 aa8.2□□□□□ -1.1
ZNF540-206ENST00000589117 PI4KBQ9UBF8 816 aa8.2□□□□□ -1.1
ZNF540-206ENST00000589117 PUF60Q9UHX1 559 aaKnown RBP8.2□□□□□ -1.1
ZNF540-206ENST00000589117 PCDHB9Q9Y5E1 797 aa8.2□□□□□ -1.1
ZNF540-206ENST00000589117 SBF2Q86WG5 1849 aa8.2□□□□□ -1.1
ZNF540-206ENST00000589117 FCER1AP12319 257 aa8.2□□□□□ -1.1
ZNF540-206ENST00000589117 CTHP32929 405 aa8.2□□□□□ -1.1
ZNF540-206ENST00000589117 FKBP1AP62942 108 aaKnown RBP8.2□□□□□ -1.1
ZNF540-206ENST00000589117 FKBP3Q00688 224 aaKnown RBP8.2□□□□□ -1.1
ZNF540-206ENST00000589117 GRB10Q13322 594 aa8.2□□□□□ -1.1
ZNF540-206ENST00000589117 HDXQ7Z353 690 aa8.2□□□□□ -1.1
ZNF540-206ENST00000589117 KRT27Q7Z3Y8 459 aa8.2□□□□□ -1.1
ZNF540-206ENST00000589117 MYOCDQ8IZQ8 938 aa8.2□□□□□ -1.1
ZNF540-206ENST00000589117 ERMNQ8TAM6 284 aa8.2□□□□□ -1.1
ZNF540-206ENST00000589117 MASTLQ96GX5 879 aa8.2□□□□□ -1.1
ZNF540-206ENST00000589117 ZDHHC15Q96MV8 337 aa8.2□□□□□ -1.1
ZNF540-206ENST00000589117 DEF6Q9H4E7 631 aa8.2□□□□□ -1.1
ZNF540-206ENST00000589117 QTRT2Q9H974 415 aaKnown RBP8.2□□□□□ -1.1
ZNF540-206ENST00000589117 SAR1BQ9Y6B6 198 aa8.2□□□□□ -1.1
ZNF540-206ENST00000589117 MYH1P12882 1939 aa8.2□□□□□ -1.1
ZNF540-206ENST00000589117 MYMKA6NI61 221 aa8.19□□□□□ -1.1
ZNF540-206ENST00000589117 H3BRB1 525 aa8.19□□□□□ -1.1
ZNF540-206ENST00000589117 TDP2O95551 362 aa8.19□□□□□ -1.1
ZNF540-206ENST00000589117 ARHGAP25P42331 645 aa8.19□□□□□ -1.1
ZNF540-206ENST00000589117 AP3B2Q13367 1082 aa8.19□□□□□ -1.1
ZNF540-206ENST00000589117 MAP9Q49MG5 647 aa8.19□□□□□ -1.1
ZNF540-206ENST00000589117 CERKLQ49MI3 558 aaPredicted RBP8.19□□□□□ -1.1
ZNF540-206ENST00000589117 HAUS3Q68CZ6 603 aa8.19□□□□□ -1.1
ZNF540-206ENST00000589117 CDC42EP5Q6NZY7 148 aa8.19□□□□□ -1.1
ZNF540-206ENST00000589117 DYMQ7RTS9 669 aa8.19□□□□□ -1.1
ZNF540-206ENST00000589117 TEX2Q8IWB9 1127 aa8.19□□□□□ -1.1
ZNF540-206ENST00000589117 MKL1Q969V6 931 aa8.19□□□□□ -1.1
ZNF540-206ENST00000589117 JAKMIP2Q96AA8 810 aa8.19□□□□□ -1.1
ZNF540-206ENST00000589117 TUT1Q9H6E5 874 aaKnown RBP8.19□□□□□ -1.1
ZNF540-206ENST00000589117 ZSWIM4Q9H7M6 989 aa8.19□□□□□ -1.1
ZNF540-206ENST00000589117 BLOC1S4Q9NUP1 217 aa8.19□□□□□ -1.1
ZNF540-206ENST00000589117 NYAP2Q9P242 653 aa8.19□□□□□ -1.1
ZNF540-206ENST00000589117 PLAGL2Q9UPG8 496 aa8.19□□□□□ -1.1
ZNF540-206ENST00000589117 PCDHA1Q9Y5I3 950 aa8.19□□□□□ -1.1
ZNF540-206ENST00000589117 DDX60LQ5H9U9 1706 aaKnown RBP8.19□□□□□ -1.1
ZNF540-206ENST00000589117 ANO9A1A5B4 782 aa8.19□□□□□ -1.1
ZNF540-206ENST00000589117 CCDC66A2RUB6 948 aa8.19□□□□□ -1.1
ZNF540-206ENST00000589117 RNF225M0QZC1 329 aaPredicted RBP8.19□□□□□ -1.1
ZNF540-206ENST00000589117 SLC37A4O43826 429 aa8.19□□□□□ -1.1
ZNF540-206ENST00000589117 TRIM37O94972 964 aa8.19□□□□□ -1.1
ZNF540-206ENST00000589117 FOSP01100 380 aaPredicted RBP8.19□□□□□ -1.1
ZNF540-206ENST00000589117 HNRNPH3P31942 346 aaKnown RBP8.19□□□□□ -1.1
ZNF540-206ENST00000589117 SHMT1P34896 483 aa8.19□□□□□ -1.1
ZNF540-206ENST00000589117 CRKP46108 304 aa8.19□□□□□ -1.1
ZNF540-206ENST00000589117 SCNN1DP51172 638 aa8.19□□□□□ -1.1
ZNF540-206ENST00000589117 RBM5P52756 815 aaKnown RBP eCLIP8.19□□□□□ -1.1
ZNF540-206ENST00000589117 TMEM119Q4V9L6 283 aa8.19□□□□□ -1.1
ZNF540-206ENST00000589117 TAF3Q5VWG9 929 aa8.19□□□□□ -1.1
ZNF540-206ENST00000589117 MOXD1Q6UVY6 613 aa8.19□□□□□ -1.1
ZNF540-206ENST00000589117 CACNA2D4Q7Z3S7 1137 aa8.19□□□□□ -1.1
ZNF540-206ENST00000589117 KIAA0895Q8NCT3 520 aa8.19□□□□□ -1.1
ZNF540-206ENST00000589117 TRIM58Q8NG06 486 aa8.19□□□□□ -1.1
ZNF540-206ENST00000589117 NEK11Q8NG66 645 aa8.19□□□□□ -1.1
ZNF540-206ENST00000589117 MTMR8Q96EF0 704 aa8.19□□□□□ -1.1
ZNF540-206ENST00000589117 TTYH3Q9C0H2 523 aa8.19□□□□□ -1.1
ZNF540-206ENST00000589117 SEMA6BQ9H3T3 888 aa8.19□□□□□ -1.1
ZNF540-206ENST00000589117 MMRN2Q9H8L6 949 aa8.19□□□□□ -1.1
ZNF540-206ENST00000589117 AGPAT5Q9NUQ2 364 aa8.19□□□□□ -1.1
ZNF540-206ENST00000589117 POTEMA6NI47 508 aa8.18□□□□□ -1.1
ZNF540-206ENST00000589117 TACC1O75410 805 aa8.18□□□□□ -1.1
ZNF540-206ENST00000589117 KRT18P05783 430 aaKnown RBP8.18□□□□□ -1.1
ZNF540-206ENST00000589117 SMC1AQ14683 1233 aaKnown RBP8.18□□□□□ -1.1
ZNF540-206ENST00000589117 ECM1Q16610 540 aa8.18□□□□□ -1.1
ZNF540-206ENST00000589117 LONRF2Q1L5Z9 754 aa8.18□□□□□ -1.1
ZNF540-206ENST00000589117 MIIPQ5JXC2 388 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms