RNA–Protein interactions for RNA: ENST00000586253.1

SMAD4-204, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 784 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-204ENST00000586253 NKX3-2P78367 333 aa9.16□□□□□ -0.94
SMAD4-204ENST00000586253 TNFAIP2Q03169 654 aa9.16□□□□□ -0.94
SMAD4-204ENST00000586253 TTLL4Q14679 1199 aa9.16□□□□□ -0.94
SMAD4-204ENST00000586253 GNPTABQ3T906 1256 aa9.16□□□□□ -0.94
SMAD4-204ENST00000586253 DUSP28Q4G0W2 176 aa9.16□□□□□ -0.94
SMAD4-204ENST00000586253 KCNV1Q6PIU1 500 aa9.16□□□□□ -0.94
SMAD4-204ENST00000586253 EEPD1Q7L9B9 569 aa9.16□□□□□ -0.94
SMAD4-204ENST00000586253 ARRDC4Q8NCT1 418 aa9.16□□□□□ -0.94
SMAD4-204ENST00000586253 IL31RAQ8NI17 732 aa9.16□□□□□ -0.94
SMAD4-204ENST00000586253 AIFM3Q96NN9 605 aa9.16□□□□□ -0.94
SMAD4-204ENST00000586253 ALG1Q9BT22 464 aa9.16□□□□□ -0.94
SMAD4-204ENST00000586253 ANO3Q9BYT9 981 aa9.16□□□□□ -0.94
SMAD4-204ENST00000586253 WDR11Q9BZH6 1224 aa9.16□□□□□ -0.94
SMAD4-204ENST00000586253 UPF3AQ9H1J1 476 aaKnown RBP9.16□□□□□ -0.94
SMAD4-204ENST00000586253 SPC25Q9HBM1 224 aa9.16□□□□□ -0.94
SMAD4-204ENST00000586253 XPNPEP3Q9NQH7 507 aa9.16□□□□□ -0.94
SMAD4-204ENST00000586253 PCDHA4Q9UN74 947 aa9.16□□□□□ -0.94
SMAD4-204ENST00000586253 GNEQ9Y223 722 aaKnown RBP9.16□□□□□ -0.94
SMAD4-204ENST00000586253 DDX49Q9Y6V7 483 aaKnown RBP9.16□□□□□ -0.94
SMAD4-204ENST00000586253 SYNRGQ9UMZ2 1314 aa9.15□□□□□ -0.94
SMAD4-204ENST00000586253 C11orf97A0A1B0GVM6 126 aaPredicted RBP9.15□□□□□ -0.94
SMAD4-204ENST00000586253 M0R2N6 131 aa9.15□□□□□ -0.94
SMAD4-204ENST00000586253 DNM1LO00429 736 aa9.15□□□□□ -0.94
SMAD4-204ENST00000586253 ADCY6O43306 1168 aa9.15□□□□□ -0.94
SMAD4-204ENST00000586253 MYCLP12524 364 aaPredicted RBP9.15□□□□□ -0.94
SMAD4-204ENST00000586253 SMPD1P17405 629 aa9.15□□□□□ -0.94
SMAD4-204ENST00000586253 EN2P19622 333 aaPredicted RBP9.15□□□□□ -0.94
SMAD4-204ENST00000586253 CST5P28325 142 aaPredicted RBP9.15□□□□□ -0.94
SMAD4-204ENST00000586253 ICAM3P32942 547 aa9.15□□□□□ -0.94
SMAD4-204ENST00000586253 ADCYAP1R1P41586 468 aa9.15□□□□□ -0.94
SMAD4-204ENST00000586253 RGS19P49795 217 aa9.15□□□□□ -0.94
SMAD4-204ENST00000586253 MMP16P51512 607 aa9.15□□□□□ -0.94
SMAD4-204ENST00000586253 GJA9P57773 515 aa9.15□□□□□ -0.94
SMAD4-204ENST00000586253 MRPS9P82933 396 aaKnown RBP9.15□□□□□ -0.94
SMAD4-204ENST00000586253 NPY5RQ15761 445 aa9.15□□□□□ -0.94
SMAD4-204ENST00000586253 UBE2Q1Q7Z7E8 422 aa9.15□□□□□ -0.94
SMAD4-204ENST00000586253 RNF180Q86T96 592 aa9.15□□□□□ -0.94
SMAD4-204ENST00000586253 BLIDQ8IZY5 108 aa9.15□□□□□ -0.94
SMAD4-204ENST00000586253 CRYGNQ8WXF5 182 aa9.15□□□□□ -0.94
SMAD4-204ENST00000586253 SNX21Q969T3 373 aa9.15□□□□□ -0.94
SMAD4-204ENST00000586253 CDHR1Q96JP9 859 aa9.15□□□□□ -0.94
SMAD4-204ENST00000586253 INPP4AQ96PE3 977 aaPredicted RBP9.15□□□□□ -0.94
SMAD4-204ENST00000586253 PHF20Q9BVI0 1012 aa9.15□□□□□ -0.94
SMAD4-204ENST00000586253 PDGFCQ9NRA1 345 aa9.15□□□□□ -0.94
SMAD4-204ENST00000586253 KIF3AQ9Y496 699 aa9.15□□□□□ -0.94
SMAD4-204ENST00000586253 ZSCAN21Q9Y5A6 473 aaPredicted RBP9.15□□□□□ -0.94
SMAD4-204ENST00000586253 SPATA31C2B4DYI2 1134 aa9.14□□□□□ -0.95
SMAD4-204ENST00000586253 MAFGO15525 162 aa9.14□□□□□ -0.95
SMAD4-204ENST00000586253 FIBPO43427 364 aa9.14□□□□□ -0.95
SMAD4-204ENST00000586253 ADAMTS4O75173 837 aa9.14□□□□□ -0.95
SMAD4-204ENST00000586253 FARP2O94887 1054 aaPredicted RBP9.14□□□□□ -0.95
SMAD4-204ENST00000586253 CYP3A4P08684 503 aa9.14□□□□□ -0.95
SMAD4-204ENST00000586253 TXNP10599 105 aaKnown RBP9.14□□□□□ -0.95
SMAD4-204ENST00000586253 CD46P15529 392 aa9.14□□□□□ -0.95
SMAD4-204ENST00000586253 ARHGAP4P98171 946 aa9.14□□□□□ -0.95
SMAD4-204ENST00000586253 CUL4AQ13619 759 aa9.14□□□□□ -0.95
SMAD4-204ENST00000586253 TRIM29Q14134 588 aa9.14□□□□□ -0.95
SMAD4-204ENST00000586253 LRRC41Q15345 812 aa9.14□□□□□ -0.95
SMAD4-204ENST00000586253 JAKMIP3Q5VZ66 844 aa9.14□□□□□ -0.95
SMAD4-204ENST00000586253 ANO1Q5XXA6 986 aa9.14□□□□□ -0.95
SMAD4-204ENST00000586253 CCDC62Q6P9F0 684 aa9.14□□□□□ -0.95
SMAD4-204ENST00000586253 SEPT14Q6ZU15 432 aa9.14□□□□□ -0.95
SMAD4-204ENST00000586253 TLK2Q86UE8 772 aa9.14□□□□□ -0.95
SMAD4-204ENST00000586253 NLRX1Q86UT6 975 aa9.14□□□□□ -0.95
SMAD4-204ENST00000586253 KLHDC9Q8NEP7 349 aa9.14□□□□□ -0.95
SMAD4-204ENST00000586253 LENG1Q96BZ8 264 aaPredicted RBP9.14□□□□□ -0.95
SMAD4-204ENST00000586253 GPRASP2Q96D09 838 aa9.14□□□□□ -0.95
SMAD4-204ENST00000586253 TSEN34Q9BSV6 310 aaKnown RBP9.14□□□□□ -0.95
SMAD4-204ENST00000586253 BRMS1Q9HCU9 246 aa9.14□□□□□ -0.95
SMAD4-204ENST00000586253 TMEM260Q9NX78 707 aa9.14□□□□□ -0.95
SMAD4-204ENST00000586253 DDX41Q9UJV9 622 aaKnown RBP9.14□□□□□ -0.95
SMAD4-204ENST00000586253 MRVI1Q9Y6F6 885 aa9.14□□□□□ -0.95
SMAD4-204ENST00000586253 MYH7BA7E2Y1 1941 aa9.13□□□□□ -0.95
SMAD4-204ENST00000586253 KBTBD13C9JR72 458 aa9.13□□□□□ -0.95
SMAD4-204ENST00000586253 ZEB2O60315 1214 aa9.13□□□□□ -0.95
SMAD4-204ENST00000586253 ARIH2O95376 493 aa9.13□□□□□ -0.95
SMAD4-204ENST00000586253 PGK1P00558 417 aa9.13□□□□□ -0.95
SMAD4-204ENST00000586253 GH1P01241 217 aa9.13□□□□□ -0.95
SMAD4-204ENST00000586253 MMP1P03956 469 aa9.13□□□□□ -0.95
SMAD4-204ENST00000586253 COL6A1P12109 1028 aa9.13□□□□□ -0.95
SMAD4-204ENST00000586253 SSTR3P32745 418 aaPredicted RBP9.13□□□□□ -0.95
SMAD4-204ENST00000586253 CIITAP33076 1130 aa9.13□□□□□ -0.95
SMAD4-204ENST00000586253 KRT2P35908 639 aa9.13□□□□□ -0.95
SMAD4-204ENST00000586253 USP11P51784 963 aa9.13□□□□□ -0.95
SMAD4-204ENST00000586253 CEP55Q53EZ4 464 aa9.13□□□□□ -0.95
SMAD4-204ENST00000586253 KRT40Q6A162 431 aa9.13□□□□□ -0.95
SMAD4-204ENST00000586253 CCSAPQ6IQ19 270 aaPredicted RBP9.13□□□□□ -0.95
SMAD4-204ENST00000586253 NIPA1Q7RTP0 329 aa9.13□□□□□ -0.95
SMAD4-204ENST00000586253 KRT25Q7Z3Z0 450 aa9.13□□□□□ -0.95
SMAD4-204ENST00000586253 NECAB2Q7Z6G3 386 aa9.13□□□□□ -0.95
SMAD4-204ENST00000586253 FAM184AQ8NB25 1140 aa9.13□□□□□ -0.95
SMAD4-204ENST00000586253 PCSK9Q8NBP7 692 aaKnown RBP9.13□□□□□ -0.95
SMAD4-204ENST00000586253 FBXO18Q8NFZ0 1043 aa9.13□□□□□ -0.95
SMAD4-204ENST00000586253 INTS4Q96HW7 963 aaKnown RBP9.13□□□□□ -0.95
SMAD4-204ENST00000586253 C8orf76Q96K31 380 aa9.13□□□□□ -0.95
SMAD4-204ENST00000586253 SENP7Q9BQF6 1050 aa9.13□□□□□ -0.95
SMAD4-204ENST00000586253 AP5M1Q9H0R1 490 aa9.13□□□□□ -0.95
SMAD4-204ENST00000586253 JADE2Q9NQC1 790 aa9.13□□□□□ -0.95
SMAD4-204ENST00000586253 GMPR2Q9P2T1 348 aaKnown RBP9.13□□□□□ -0.95
SMAD4-204ENST00000586253 KCNJ14Q9UNX9 436 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms