RNA–Protein interactions for RNA: ENST00000585466.1

CLIP3-202, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 2

Gene CLIP3, Length 368 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-202ENST00000585466 NBNO60934 754 aa17.32■□□□□ 0.36
CLIP3-202ENST00000585466 CXCL10P02778 98 aa17.32■□□□□ 0.36
CLIP3-202ENST00000585466 SELPP16109 830 aa17.32■□□□□ 0.36
CLIP3-202ENST00000585466 DNAJB2P25686 324 aa17.32■□□□□ 0.36
CLIP3-202ENST00000585466 TCF7P36402 384 aaPredicted RBP17.32■□□□□ 0.36
CLIP3-202ENST00000585466 SCRN1Q12765 414 aa17.32■□□□□ 0.36
CLIP3-202ENST00000585466 NIPA1Q7RTP0 329 aa17.32■□□□□ 0.36
CLIP3-202ENST00000585466 RPUSD2Q8IZ73 545 aaKnown RBP17.32■□□□□ 0.36
CLIP3-202ENST00000585466 REXO1Q8N1G1 1221 aaKnown RBP17.32■□□□□ 0.36
CLIP3-202ENST00000585466 AIFM3Q96NN9 605 aa17.32■□□□□ 0.36
CLIP3-202ENST00000585466 PBX4Q9BYU1 374 aa17.32■□□□□ 0.36
CLIP3-202ENST00000585466 NOD1Q9Y239 953 aa17.32■□□□□ 0.36
CLIP3-202ENST00000585466 WDR81Q562E7 1941 aa17.31■□□□□ 0.36
CLIP3-202ENST00000585466 TMEM265A0A087WTH1 108 aa17.31■□□□□ 0.36
CLIP3-202ENST00000585466 DHX15O43143 795 aaKnown RBP17.31■□□□□ 0.36
CLIP3-202ENST00000585466 LGR5O75473 907 aa17.31■□□□□ 0.36
CLIP3-202ENST00000585466 STK3Q13188 491 aa17.31■□□□□ 0.36
CLIP3-202ENST00000585466 ZNF618Q5T7W0 954 aa17.31■□□□□ 0.36
CLIP3-202ENST00000585466 UTP14CQ5TAP6 766 aaKnown RBP17.31■□□□□ 0.36
CLIP3-202ENST00000585466 ZNF697Q5TEC3 545 aa17.31■□□□□ 0.36
CLIP3-202ENST00000585466 LRRC8DQ7L1W4 858 aa17.31■□□□□ 0.36
CLIP3-202ENST00000585466 RETREG2Q8NC44 543 aa17.31■□□□□ 0.36
CLIP3-202ENST00000585466 LENG9Q96B70 501 aa17.31■□□□□ 0.36
CLIP3-202ENST00000585466 FAM161BQ96MY7 647 aa17.31■□□□□ 0.36
CLIP3-202ENST00000585466 C6orf50Q9HD87 102 aa17.31■□□□□ 0.36
CLIP3-202ENST00000585466 JPH1Q9HDC5 661 aaPredicted RBP17.31■□□□□ 0.36
CLIP3-202ENST00000585466 CHD7Q9P2D1 2997 aa17.31■□□□□ 0.36
CLIP3-202ENST00000585466 STXBP5LQ9Y2K9 1186 aa17.31■□□□□ 0.36
CLIP3-202ENST00000585466 MYO9BQ13459 2157 aa17.3■□□□□ 0.36
CLIP3-202ENST00000585466 EMSYQ7Z589 1322 aa17.3■□□□□ 0.36
CLIP3-202ENST00000585466 C17orf102A2RUQ5 167 aa17.3■□□□□ 0.36
CLIP3-202ENST00000585466 M0R2N6 131 aa17.3■□□□□ 0.36
CLIP3-202ENST00000585466 TREHO43280 583 aa17.3■□□□□ 0.36
CLIP3-202ENST00000585466 PFKFB2O60825 505 aa17.3■□□□□ 0.36
CLIP3-202ENST00000585466 CTDNEP1O95476 244 aa17.3■□□□□ 0.36
CLIP3-202ENST00000585466 CCNE2O96020 404 aa17.3■□□□□ 0.36
CLIP3-202ENST00000585466 AK2P54819 239 aa17.3■□□□□ 0.36
CLIP3-202ENST00000585466 CCDC155Q8N6L0 562 aa17.3■□□□□ 0.36
CLIP3-202ENST00000585466 CCDC12Q8WUD4 166 aaPredicted RBP17.3■□□□□ 0.36
CLIP3-202ENST00000585466 LMBR1Q8WVP7 490 aa17.3■□□□□ 0.36
CLIP3-202ENST00000585466 SEPT1Q8WYJ6 367 aa17.3■□□□□ 0.36
CLIP3-202ENST00000585466 OSBPL7Q9BZF2 842 aa17.3■□□□□ 0.36
CLIP3-202ENST00000585466 SH3GLB2Q9NR46 395 aa17.3■□□□□ 0.36
CLIP3-202ENST00000585466 SETD4Q9NVD3 440 aa17.3■□□□□ 0.36
CLIP3-202ENST00000585466 SLC9A2Q9UBY0 812 aa17.3■□□□□ 0.36
CLIP3-202ENST00000585466 YBX2Q9Y2T7 364 aaKnown RBP17.3■□□□□ 0.36
CLIP3-202ENST00000585466 DTNBO60941 627 aa17.29■□□□□ 0.36
CLIP3-202ENST00000585466 ATG7O95352 703 aa17.29■□□□□ 0.36
CLIP3-202ENST00000585466 LARGE1O95461 756 aa17.29■□□□□ 0.36
CLIP3-202ENST00000585466 GNA11P29992 359 aa17.29■□□□□ 0.36
CLIP3-202ENST00000585466 CIITAP33076 1130 aa17.29■□□□□ 0.36
CLIP3-202ENST00000585466 AKAP17AQ02040 695 aaKnown RBP17.29■□□□□ 0.36
CLIP3-202ENST00000585466 SSRP1Q08945 709 aaKnown RBP17.29■□□□□ 0.36
CLIP3-202ENST00000585466 MKRN4PQ13434 485 aaPredicted RBP17.29■□□□□ 0.36
CLIP3-202ENST00000585466 C8orf34Q49A92 452 aa17.29■□□□□ 0.36
CLIP3-202ENST00000585466 CCDC148Q8NFR7 591 aa17.29■□□□□ 0.36
CLIP3-202ENST00000585466 CDX2Q99626 313 aaPredicted RBP17.29■□□□□ 0.36
CLIP3-202ENST00000585466 ZNF215Q9UL58 517 aaPredicted RBP17.29■□□□□ 0.36
CLIP3-202ENST00000585466 MICAL3Q7RTP6 2002 aa17.29■□□□□ 0.36
CLIP3-202ENST00000585466 EYSQ5T1H1 3165 aa17.29■□□□□ 0.36
CLIP3-202ENST00000585466 IGKV6D-21A0A0A0MT36 114 aa17.28■□□□□ 0.36
CLIP3-202ENST00000585466 DEXIO95424 95 aa17.28■□□□□ 0.36
CLIP3-202ENST00000585466 ACTR2P61160 394 aa17.28■□□□□ 0.36
CLIP3-202ENST00000585466 MARCH8Q5T0T0 291 aa17.28■□□□□ 0.36
CLIP3-202ENST00000585466 MCTP2Q6DN12 878 aa17.28■□□□□ 0.36
CLIP3-202ENST00000585466 PLA2G4DQ86XP0 818 aa17.28■□□□□ 0.36
CLIP3-202ENST00000585466 DAGLBQ8NCG7 672 aa17.28■□□□□ 0.36
CLIP3-202ENST00000585466 ATP6V0A1Q93050 837 aa17.28■□□□□ 0.36
CLIP3-202ENST00000585466 TIFAQ96CG3 184 aa17.28■□□□□ 0.36
CLIP3-202ENST00000585466 STK36Q9NRP7 1315 aa17.27■□□□□ 0.36
CLIP3-202ENST00000585466 MBLAC1A4D2B0 266 aaPredicted RBP17.27■□□□□ 0.36
CLIP3-202ENST00000585466 RABGGTBP53611 331 aa17.27■□□□□ 0.36
CLIP3-202ENST00000585466 TRIM22Q8IYM9 498 aa17.27■□□□□ 0.36
CLIP3-202ENST00000585466 MTIF3Q9H2K0 278 aaKnown RBP17.27■□□□□ 0.36
CLIP3-202ENST00000585466 SLC4A7Q9Y6M7 1214 aa17.27■□□□□ 0.36
CLIP3-202ENST00000585466 NRCAMQ92823 1304 aa17.26■□□□□ 0.35
CLIP3-202ENST00000585466 CPLX1O14810 134 aa17.26■□□□□ 0.35
CLIP3-202ENST00000585466 PARNO95453 639 aaKnown RBP17.26■□□□□ 0.35
CLIP3-202ENST00000585466 MARK3P27448 753 aa17.26■□□□□ 0.35
CLIP3-202ENST00000585466 ST3GAL1Q11201 340 aa17.26■□□□□ 0.35
CLIP3-202ENST00000585466 GRIN2CQ14957 1233 aa17.26■□□□□ 0.35
CLIP3-202ENST00000585466 ME3Q16798 604 aa17.26■□□□□ 0.35
CLIP3-202ENST00000585466 ABHD15Q6UXT9 468 aa17.26■□□□□ 0.35
CLIP3-202ENST00000585466 RUFY4Q6ZNE9 571 aa17.26■□□□□ 0.35
CLIP3-202ENST00000585466 BICD2Q8TD16 824 aa17.26■□□□□ 0.35
CLIP3-202ENST00000585466 UIMC1Q96RL1 719 aa17.26■□□□□ 0.35
CLIP3-202ENST00000585466 SDF4Q9BRK5 362 aa17.26■□□□□ 0.35
CLIP3-202ENST00000585466 SMARCAD1Q9H4L7 1026 aa17.26■□□□□ 0.35
CLIP3-202ENST00000585466 ZNF576Q9H609 170 aa17.26■□□□□ 0.35
CLIP3-202ENST00000585466 ERAP1Q9NZ08 941 aa17.26■□□□□ 0.35
CLIP3-202ENST00000585466 PCDHA4Q9UN74 947 aa17.26■□□□□ 0.35
CLIP3-202ENST00000585466 ZBBXA8MT70 800 aa17.25■□□□□ 0.35
CLIP3-202ENST00000585466 IPO5O00410 1097 aaKnown RBP17.25■□□□□ 0.35
CLIP3-202ENST00000585466 CAND2O75155 1236 aa17.25■□□□□ 0.35
CLIP3-202ENST00000585466 BAIAP3O94812 1187 aa17.25■□□□□ 0.35
CLIP3-202ENST00000585466 FDPSP14324 419 aaKnown RBP17.25■□□□□ 0.35
CLIP3-202ENST00000585466 MYOGP15173 224 aa17.25■□□□□ 0.35
CLIP3-202ENST00000585466 ATP2A2P16615 1042 aaKnown RBP17.25■□□□□ 0.35
CLIP3-202ENST00000585466 THPOP40225 353 aa17.25■□□□□ 0.35
CLIP3-202ENST00000585466 WDR5P61964 334 aaKnown RBP17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms