RNA–Protein interactions for RNA: ENST00000584655.5

RFFL-212, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 2 BASIC

Gene RFFL, Length 4,039 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-212ENST00000584655 C2CD6Q53TS8 623 aa11.38□□□□□ -0.59
RFFL-212ENST00000584655 CCDC122Q5T0U0 273 aa11.38□□□□□ -0.59
RFFL-212ENST00000584655 TAF3Q5VWG9 929 aa11.38□□□□□ -0.59
RFFL-212ENST00000584655 ARL6IP4Q66PJ3 421 aaKnown RBP11.38□□□□□ -0.59
RFFL-212ENST00000584655 CNNM4Q6P4Q7 775 aa11.38□□□□□ -0.59
RFFL-212ENST00000584655 CCDC65Q8IXS2 484 aa11.38□□□□□ -0.59
RFFL-212ENST00000584655 CCDC150Q8NCX0 1101 aa11.38□□□□□ -0.59
RFFL-212ENST00000584655 WRAP73Q9P2S5 460 aaPredicted RBP11.38□□□□□ -0.59
RFFL-212ENST00000584655 CSADQ9Y600 493 aa11.38□□□□□ -0.59
RFFL-212ENST00000584655 IKBKBO14920 756 aa11.37□□□□□ -0.59
RFFL-212ENST00000584655 NF2P35240 595 aa11.37□□□□□ -0.59
RFFL-212ENST00000584655 MTMR1Q13613 665 aa11.37□□□□□ -0.59
RFFL-212ENST00000584655 TMEM63BQ5T3F8 832 aa11.37□□□□□ -0.59
RFFL-212ENST00000584655 SWSAP1Q6NVH7 229 aa11.37□□□□□ -0.59
RFFL-212ENST00000584655 PRPF38AQ8NAV1 312 aaKnown RBP11.37□□□□□ -0.59
RFFL-212ENST00000584655 DCAF4Q8WV16 495 aa11.37□□□□□ -0.59
RFFL-212ENST00000584655 SCLT1Q96NL6 688 aa11.37□□□□□ -0.59
RFFL-212ENST00000584655 SH3GLB2Q9NR46 395 aa11.37□□□□□ -0.59
RFFL-212ENST00000584655 TMX2Q9Y320 296 aa11.37□□□□□ -0.59
RFFL-212ENST00000584655 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.37□□□□□ -0.59
RFFL-212ENST00000584655 MYH7P12883 1935 aa11.37□□□□□ -0.59
RFFL-212ENST00000584655 PDS5AQ29RF7 1337 aaKnown RBP11.37□□□□□ -0.59
RFFL-212ENST00000584655 K7ENM7 598 aa11.37□□□□□ -0.59
RFFL-212ENST00000584655 IRF6O14896 467 aa11.37□□□□□ -0.59
RFFL-212ENST00000584655 PHACTR2O75167 634 aa11.37□□□□□ -0.59
RFFL-212ENST00000584655 SEC31AO94979 1220 aaKnown RBP11.37□□□□□ -0.59
RFFL-212ENST00000584655 ITGB5P18084 799 aa11.37□□□□□ -0.59
RFFL-212ENST00000584655 SARSP49591 514 aaKnown RBP11.37□□□□□ -0.59
RFFL-212ENST00000584655 TICAM2Q86XR7 235 aa11.37□□□□□ -0.59
RFFL-212ENST00000584655 CERS3Q8IU89 383 aa11.37□□□□□ -0.59
RFFL-212ENST00000584655 FAM178BQ8IXR5 827 aa11.37□□□□□ -0.59
RFFL-212ENST00000584655 ADSSL1Q8N142 457 aa11.37□□□□□ -0.59
RFFL-212ENST00000584655 FAM133AQ8N9E0 248 aa11.37□□□□□ -0.59
RFFL-212ENST00000584655 POLR3GO15318 223 aaPredicted RBP11.37□□□□□ -0.59
RFFL-212ENST00000584655 SPAG1Q07617 926 aa11.37□□□□□ -0.59
RFFL-212ENST00000584655 CEP55Q53EZ4 464 aa11.37□□□□□ -0.59
RFFL-212ENST00000584655 TATDN1Q6P1N9 297 aa11.37□□□□□ -0.59
RFFL-212ENST00000584655 CCDC42Q96M95 316 aa11.37□□□□□ -0.59
RFFL-212ENST00000584655 UNC45AQ9H3U1 944 aa11.37□□□□□ -0.59
RFFL-212ENST00000584655 ADD3Q9UEY8 706 aaKnown RBP11.37□□□□□ -0.59
RFFL-212ENST00000584655 SEPT9Q9UHD8 586 aaPredicted RBP11.37□□□□□ -0.59
RFFL-212ENST00000584655 HERC5Q9UII4 1024 aaKnown RBP11.37□□□□□ -0.59
RFFL-212ENST00000584655 SUGT1Q9Y2Z0 365 aa11.37□□□□□ -0.59
RFFL-212ENST00000584655 MRPL11Q9Y3B7 192 aaKnown RBP11.37□□□□□ -0.59
RFFL-212ENST00000584655 ANKRD36CQ5JPF3 1778 aa11.37□□□□□ -0.59
RFFL-212ENST00000584655 CNTNAP1P78357 1384 aa11.36□□□□□ -0.59
RFFL-212ENST00000584655 CEP290O15078 2479 aa11.36□□□□□ -0.59
RFFL-212ENST00000584655 EXOC3O60645 756 aa11.36□□□□□ -0.59
RFFL-212ENST00000584655 ZFYVE27Q5T4F4 411 aa11.36□□□□□ -0.59
RFFL-212ENST00000584655 PDCL2Q8N4E4 241 aa11.36□□□□□ -0.59
RFFL-212ENST00000584655 METTL13Q8N6R0 699 aa11.36□□□□□ -0.59
RFFL-212ENST00000584655 POP1Q99575 1024 aaKnown RBP11.36□□□□□ -0.59
RFFL-212ENST00000584655 SYT17Q9BSW7 474 aa11.36□□□□□ -0.59
RFFL-212ENST00000584655 MTA3Q9BTC8 594 aa11.36□□□□□ -0.59
RFFL-212ENST00000584655 ANKFY1Q9P2R3 1169 aa11.36□□□□□ -0.59
RFFL-212ENST00000584655 SCN9AQ15858 1988 aa11.36□□□□□ -0.59
RFFL-212ENST00000584655 ADAMTSL1Q8N6G6 1762 aa11.36□□□□□ -0.59
RFFL-212ENST00000584655 ERICH4A6NGS2 130 aa11.36□□□□□ -0.59
RFFL-212ENST00000584655 KLRC4O43908 158 aa11.36□□□□□ -0.59
RFFL-212ENST00000584655 RCAN1P53805 252 aa11.36□□□□□ -0.59
RFFL-212ENST00000584655 HS1BP3Q53T59 392 aa11.36□□□□□ -0.59
RFFL-212ENST00000584655 ZNF746Q6NUN9 644 aaPredicted RBP11.36□□□□□ -0.59
RFFL-212ENST00000584655 IRF2BP1Q8IU81 584 aa11.36□□□□□ -0.59
RFFL-212ENST00000584655 SLC35F6Q8N357 371 aa11.36□□□□□ -0.59
RFFL-212ENST00000584655 GLG1Q92896 1179 aa11.36□□□□□ -0.59
RFFL-212ENST00000584655 TMEM143Q96AN5 459 aa11.36□□□□□ -0.59
RFFL-212ENST00000584655 NCK2O43639 380 aa11.36□□□□□ -0.59
RFFL-212ENST00000584655 GJB1P08034 283 aa11.36□□□□□ -0.59
RFFL-212ENST00000584655 SLC9A1P19634 815 aa11.36□□□□□ -0.59
RFFL-212ENST00000584655 GJC1P36383 396 aa11.36□□□□□ -0.59
RFFL-212ENST00000584655 PRPF4BQ13523 1007 aaKnown RBP11.36□□□□□ -0.59
RFFL-212ENST00000584655 EPC2Q52LR7 807 aa11.36□□□□□ -0.59
RFFL-212ENST00000584655 N4BP2Q86UW6 1770 aaPredicted RBP11.35□□□□□ -0.59
RFFL-212ENST00000584655 IGKV6D-41A0A0C4DH26 115 aa11.35□□□□□ -0.59
RFFL-212ENST00000584655 M0R2N6 131 aa11.35□□□□□ -0.59
RFFL-212ENST00000584655 YBX3P16989 372 aaKnown RBP eCLIP11.35□□□□□ -0.59
RFFL-212ENST00000584655 CYP11B2P19099 503 aa11.35□□□□□ -0.59
RFFL-212ENST00000584655 ANKS1AQ92625 1134 aa11.35□□□□□ -0.59
RFFL-212ENST00000584655 DUSP9Q99956 384 aaKnown RBP11.35□□□□□ -0.59
RFFL-212ENST00000584655 MLXIPQ9HAP2 919 aa11.35□□□□□ -0.59
RFFL-212ENST00000584655 ADAMTS1Q9UHI8 967 aa11.35□□□□□ -0.59
RFFL-212ENST00000584655 PPP1R12BO60237 982 aaPredicted RBP11.35□□□□□ -0.59
RFFL-212ENST00000584655 GFPT1Q06210 699 aaPredicted RBP11.35□□□□□ -0.59
RFFL-212ENST00000584655 TMEM62Q0P6H9 643 aa11.35□□□□□ -0.59
RFFL-212ENST00000584655 VGLL4Q14135 290 aa11.35□□□□□ -0.59
RFFL-212ENST00000584655 NLRX1Q86UT6 975 aa11.35□□□□□ -0.59
RFFL-212ENST00000584655 TMEM130Q8N3G9 435 aa11.35□□□□□ -0.59
RFFL-212ENST00000584655 ZNF280CQ8ND82 737 aa11.35□□□□□ -0.59
RFFL-212ENST00000584655 TRAPPC12Q8WVT3 735 aa11.35□□□□□ -0.59
RFFL-212ENST00000584655 UBXN4Q92575 508 aa11.35□□□□□ -0.59
RFFL-212ENST00000584655 MTMR9Q96QG7 549 aa11.35□□□□□ -0.59
RFFL-212ENST00000584655 GMLQ99445 158 aa11.35□□□□□ -0.59
RFFL-212ENST00000584655 KBTBD4Q9NVX7 518 aa11.35□□□□□ -0.59
RFFL-212ENST00000584655 GABBR1Q9UBS5 961 aa11.35□□□□□ -0.59
RFFL-212ENST00000584655 CCDC175P0C221 793 aa11.35□□□□□ -0.59
RFFL-212ENST00000584655 SRGAP2CP0DJJ0 459 aa11.35□□□□□ -0.59
RFFL-212ENST00000584655 HAUS3Q68CZ6 603 aa11.35□□□□□ -0.59
RFFL-212ENST00000584655 SARM1Q6SZW1 724 aa11.35□□□□□ -0.59
RFFL-212ENST00000584655 CEP170P1Q96L14 293 aa11.35□□□□□ -0.59
RFFL-212ENST00000584655 RABEP2Q9H5N1 569 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms