RNA–Protein interactions for RNA: ENST00000584063.5

CDK5RAP3-231, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 1 (best)

Gene CDK5RAP3, Length 2,759 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-231	ENST00000584063	C2orf54	Q08AI8	447 aa		12.78	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	BRD3	Q15059	726 aa		12.78	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	LETM2	Q2VYF4	491 aa		12.78	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	CCDC178	Q5BJE1	867 aa		12.78	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	STYK1	Q6J9G0	422 aa		12.78	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	PLPP6	Q8IY26	295 aa		12.78	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	SAMD3	Q8N6K7	520 aa		12.78	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	CEP89	Q96ST8	783 aa		12.78	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	IQCG	Q9H095	443 aa	Known RBP	12.78	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	FAM204A	Q9H8W3	233 aa		12.78	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	TBC1D7	Q9P0N9	293 aa		12.78	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	PCDHA4	Q9UN74	947 aa		12.78	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	FRMPD2	Q68DX3	1309 aa	Predicted RBP	12.78	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	MYO1C	O00159	1063 aa		12.78	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	RASA1	P20936	1047 aa		12.78	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	CDC42EP5	Q6NZY7	148 aa		12.78	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	TMTC1	Q8IUR5	882 aa		12.78	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	SUGP1	Q8IWZ8	645 aa	Known RBP	12.78	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	EHD4	Q9H223	541 aa		12.78	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	STXBP3	O00186	592 aa		12.77	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	FCER1A	P12319	257 aa		12.77	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	TRIM21	P19474	475 aa	Known RBP	12.77	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	HERVK_113	P62684	666 aa		12.77	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	ENOX2	Q16206	610 aa	Known RBP	12.77	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	CCDC91	Q7Z6B0	441 aa		12.77	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	TATDN2	Q93075	761 aa		12.77	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	TDRD3	Q9H7E2	651 aa	Known RBP	12.77	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	CPSF2	Q9P2I0	782 aa	Known RBP	12.77	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	LUC7L2	Q9Y383	392 aa	Known RBP	12.77	□□□□□ -0.36
CDK5RAP3-231	ENST00000584063	KIAA1551	Q9HCM1	1747 aa		12.77	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	GTPBP6	O43824	516 aa	Predicted RBP	12.77	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	ERLIN1	O75477	346 aa		12.77	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	FAM117B	Q6P1L5	589 aa		12.77	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	WDR59	Q6PJI9	974 aa		12.77	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	LEKR1	Q6ZMV7	388 aa		12.77	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	DISC1	Q9NRI5	854 aa		12.77	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063		M0R2N6	131 aa		12.76	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	PDE2A	O00408	941 aa	Predicted RBP	12.76	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	GRM4	Q14833	912 aa		12.76	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	APOBEC3H	Q6NTF7	200 aa	Known RBP	12.76	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	LRRC47	Q8N1G4	583 aa	Known RBP	12.76	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	LSM14A	Q8ND56	463 aa	Known RBP	12.76	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	ANKRD20A12P	Q8NF67	263 aa		12.76	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	HDAC7	Q8WUI4	952 aa		12.76	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	CEP95	Q96GE4	821 aa		12.76	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	NAA15	Q9BXJ9	866 aa	Known RBP	12.76	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	ZNF287	Q9HBT7	754 aa		12.76	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	CLRN2	A0PK11	232 aa		12.76	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	KLRF2	D3W0D1	207 aa		12.76	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	PC	P11498	1178 aa	Known RBP	12.76	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	ACTN2	P35609	894 aa		12.76	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	PDAP1	Q13442	181 aa	Known RBP	12.76	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	ARHGAP27	Q6ZUM4	889 aa		12.76	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	MPP4	Q96JB8	637 aa		12.76	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	PIGS	Q96S52	555 aa		12.76	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	NACA2	Q9H009	215 aa		12.76	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	KANSL2	Q9H9L4	492 aa		12.76	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	LIMA1	Q9UHB6	759 aa	Known RBP	12.76	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	RWDD2A	Q9UIY3	292 aa		12.76	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	COL11A2	P13942	1736 aa	Predicted RBP	12.76	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	ATP8B1	O43520	1251 aa		12.75	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	KLRC4	O43908	158 aa		12.75	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	CCNT1	O60563	726 aa	Known RBP	12.75	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	RNF40	O75150	1001 aa		12.75	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	PLCG1	P19174	1290 aa		12.75	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	KIF5B	P33176	963 aa		12.75	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	RNASE9	P60153	205 aa	Known RBP	12.75	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	COL19A1	Q14993	1142 aa		12.75	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	ZNF658	Q5TYW1	1059 aa	Predicted RBP	12.75	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	DTHD1	Q6ZMT9	781 aa		12.75	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	MB21D1	Q8N884	522 aa		12.75	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	KIAA1958	Q8N8K9	716 aa		12.75	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	OR8K1	Q8NGG5	319 aa		12.75	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	HDAC9	Q9UKV0	1011 aa		12.75	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	RRP15	Q9Y3B9	282 aa	Known RBP	12.75	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	USP17L5	A8MUK1	530 aa		12.75	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	MME	P08473	750 aa		12.75	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	UBA7	P41226	1012 aa		12.75	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	TEC	P42680	631 aa		12.75	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	NAPA	P54920	295 aa		12.75	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	AMPD2	Q01433	879 aa		12.75	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	PRPF4B	Q13523	1007 aa	Known RBP	12.75	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	TCEAL1	Q15170	157 aa		12.75	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	SHROOM1	Q2M3G4	852 aa	Predicted RBP	12.75	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	LMNTD2	Q8IXW0	634 aa		12.75	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	CSGALNACT2	Q8N6G5	542 aa		12.75	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	CCDC155	Q8N6L0	562 aa		12.75	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	MSANTD4	Q8NCY6	345 aa		12.75	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	CCDC148	Q8NFR7	591 aa		12.75	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	COA7	Q96BR5	231 aa		12.75	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	MLXIP	Q9HAP2	919 aa		12.75	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	PLSCR2	Q9NRY7	297 aa		12.75	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	FAM207A	Q9NSI2	230 aa	Predicted RBP	12.75	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	SERPINB13	Q9UIV8	391 aa		12.75	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	SLX4	Q8IY92	1834 aa		12.75	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	AKR1B1	P15121	316 aa		12.75	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	TBC1D8B	Q0IIM8	1120 aa		12.75	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	DACT2	Q5SW24	774 aa		12.75	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	STRIP1	Q5VSL9	837 aa		12.75	□□□□□ -0.37
CDK5RAP3-231	ENST00000584063	AGAP9	Q5VTM2	703 aa		12.75	□□□□□ -0.37

Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms