RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 NAP1L2Q9ULW6 460 aaPredicted RBP23.48■■□□□ 1.35
SHMT1-209ENST00000582653 TRANK1O15050 2925 aa23.47■■□□□ 1.35
SHMT1-209ENST00000582653 MUC3AQ02505 3323 aa23.47■■□□□ 1.35
SHMT1-209ENST00000582653 SPDYE3A6NKU9 549 aa23.47■■□□□ 1.35
SHMT1-209ENST00000582653 GOLGA8AA7E2F4 631 aa23.47■■□□□ 1.35
SHMT1-209ENST00000582653 GOLGA8BA8MQT2 603 aa23.47■■□□□ 1.35
SHMT1-209ENST00000582653 TNFRSF10AO00220 468 aa23.47■■□□□ 1.35
SHMT1-209ENST00000582653 MAFGO15525 162 aa23.47■■□□□ 1.35
SHMT1-209ENST00000582653 ADAM17P78536 824 aa23.47■■□□□ 1.35
SHMT1-209ENST00000582653 PKD2L1Q9P0L9 805 aa23.47■■□□□ 1.35
SHMT1-209ENST00000582653 SNX14Q9Y5W7 946 aa23.47■■□□□ 1.35
SHMT1-209ENST00000582653 XIRP2A4UGR9 3374 aa23.47■■□□□ 1.35
SHMT1-209ENST00000582653 LPXNO60711 386 aa23.46■■□□□ 1.35
SHMT1-209ENST00000582653 HMGB1P09429 215 aaKnown RBP23.46■■□□□ 1.35
SHMT1-209ENST00000582653 NAPAP54920 295 aa23.46■■□□□ 1.35
SHMT1-209ENST00000582653 FGD1P98174 961 aa23.46■■□□□ 1.35
SHMT1-209ENST00000582653 GRB10Q13322 594 aa23.46■■□□□ 1.35
SHMT1-209ENST00000582653 MKRN4PQ13434 485 aaPredicted RBP23.46■■□□□ 1.35
SHMT1-209ENST00000582653 LIN28BQ6ZN17 250 aaKnown RBP eCLIP23.46■■□□□ 1.35
SHMT1-209ENST00000582653 KCNB2Q92953 911 aa23.46■■□□□ 1.35
SHMT1-209ENST00000582653 JAKMIP1Q96N16 626 aaKnown RBP23.46■■□□□ 1.35
SHMT1-209ENST00000582653 LMCD1Q9NZU5 365 aa23.46■■□□□ 1.35
SHMT1-209ENST00000582653 UBIAD1Q9Y5Z9 338 aa23.46■■□□□ 1.35
SHMT1-209ENST00000582653 REV3LO60673 3130 aa23.45■■□□□ 1.34
SHMT1-209ENST00000582653 NRCAMQ92823 1304 aa23.45■■□□□ 1.34
SHMT1-209ENST00000582653 KCNA2P16389 499 aa23.45■■□□□ 1.34
SHMT1-209ENST00000582653 HSPA4P34932 840 aa23.45■■□□□ 1.34
SHMT1-209ENST00000582653 APOBRQ0VD83 1088 aa23.45■■□□□ 1.34
SHMT1-209ENST00000582653 KRT40Q6A162 431 aa23.45■■□□□ 1.34
SHMT1-209ENST00000582653 Q6ZUG5 572 aa23.45■■□□□ 1.34
SHMT1-209ENST00000582653 SPRED2Q7Z698 418 aa23.45■■□□□ 1.34
SHMT1-209ENST00000582653 PGBD1Q96JS3 809 aa23.45■■□□□ 1.34
SHMT1-209ENST00000582653 INSL6Q9Y581 213 aa23.45■■□□□ 1.34
SHMT1-209ENST00000582653 PTPRSQ13332 1948 aa23.45■■□□□ 1.34
SHMT1-209ENST00000582653 STXBP3O00186 592 aa23.44■■□□□ 1.34
SHMT1-209ENST00000582653 AMHP03971 560 aa23.44■■□□□ 1.34
SHMT1-209ENST00000582653 BMP1P13497 986 aa23.44■■□□□ 1.34
SHMT1-209ENST00000582653 ADD1P35611 737 aaKnown RBP23.44■■□□□ 1.34
SHMT1-209ENST00000582653 TCF7P36402 384 aaPredicted RBP23.44■■□□□ 1.34
SHMT1-209ENST00000582653 ERVK-21P61565 698 aa23.44■■□□□ 1.34
SHMT1-209ENST00000582653 MTMR1Q13613 665 aa23.44■■□□□ 1.34
SHMT1-209ENST00000582653 SKIV2LQ15477 1246 aaKnown RBP23.44■■□□□ 1.34
SHMT1-209ENST00000582653 AAK1Q2M2I8 961 aa23.44■■□□□ 1.34
SHMT1-209ENST00000582653 ADAMTS19Q8TE59 1207 aa23.44■■□□□ 1.34
SHMT1-209ENST00000582653 SEPT1Q8WYJ6 367 aa23.44■■□□□ 1.34
SHMT1-209ENST00000582653 RIC8AQ9NPQ8 531 aa23.44■■□□□ 1.34
SHMT1-209ENST00000582653 GSTTP1A0A1W2PQM5 241 aa23.43■■□□□ 1.34
SHMT1-209ENST00000582653 LINC01553A4QN01 128 aa23.43■■□□□ 1.34
SHMT1-209ENST00000582653 FAM26DQ5JW98 314 aa23.43■■□□□ 1.34
SHMT1-209ENST00000582653 TEX2Q8IWB9 1127 aa23.43■■□□□ 1.34
SHMT1-209ENST00000582653 IL27Q8NEV9 243 aa23.43■■□□□ 1.34
SHMT1-209ENST00000582653 SEPT8Q92599 483 aa23.43■■□□□ 1.34
SHMT1-209ENST00000582653 BRF1Q92994 677 aa23.43■■□□□ 1.34
SHMT1-209ENST00000582653 TGS1Q96RS0 853 aaKnown RBP23.43■■□□□ 1.34
SHMT1-209ENST00000582653 SUGCTQ9HAC7 445 aa23.43■■□□□ 1.34
SHMT1-209ENST00000582653 JADE2Q9NQC1 790 aa23.43■■□□□ 1.34
SHMT1-209ENST00000582653 TMEM260Q9NX78 707 aa23.43■■□□□ 1.34
SHMT1-209ENST00000582653 COG5Q9UP83 839 aa23.43■■□□□ 1.34
SHMT1-209ENST00000582653 SMCO2A6NFE2 343 aa23.42■■□□□ 1.34
SHMT1-209ENST00000582653 HTRA4P83105 476 aaPredicted RBP23.42■■□□□ 1.34
SHMT1-209ENST00000582653 ARHGAP4P98171 946 aa23.42■■□□□ 1.34
SHMT1-209ENST00000582653 TFF2Q03403 129 aa23.42■■□□□ 1.34
SHMT1-209ENST00000582653 FAM117BQ6P1L5 589 aa23.42■■□□□ 1.34
SHMT1-209ENST00000582653 RPAINQ86UA6 219 aa23.42■■□□□ 1.34
SHMT1-209ENST00000582653 CYP2W1Q8TAV3 490 aa23.42■■□□□ 1.34
SHMT1-209ENST00000582653 LMBR1Q8WVP7 490 aa23.42■■□□□ 1.34
SHMT1-209ENST00000582653 OSBPL7Q9BZF2 842 aa23.42■■□□□ 1.34
SHMT1-209ENST00000582653 METAP2P50579 478 aaKnown RBP eCLIP23.41■■□□□ 1.34
SHMT1-209ENST00000582653 ADCY7P51828 1080 aa23.41■■□□□ 1.34
SHMT1-209ENST00000582653 BLOC1S2Q6QNY1 142 aa23.41■■□□□ 1.34
SHMT1-209ENST00000582653 MYOCDQ8IZQ8 938 aa23.41■■□□□ 1.34
SHMT1-209ENST00000582653 TOP1MTQ969P6 601 aa23.41■■□□□ 1.34
SHMT1-209ENST00000582653 UHRF1Q96T88 793 aaPredicted RBP23.41■■□□□ 1.34
SHMT1-209ENST00000582653 MXRA8Q9BRK3 442 aa23.41■■□□□ 1.34
SHMT1-209ENST00000582653 BARHL2Q9NY43 387 aa23.41■■□□□ 1.34
SHMT1-209ENST00000582653 ERAP1Q9NZ08 941 aa23.41■■□□□ 1.34
SHMT1-209ENST00000582653 PRRC2BQ5JSZ5 2229 aaKnown RBP23.4■■□□□ 1.34
SHMT1-209ENST00000582653 CTSHP09668 335 aa23.4■■□□□ 1.34
SHMT1-209ENST00000582653 PPP1R18Q6NYC8 613 aa23.4■■□□□ 1.34
SHMT1-209ENST00000582653 APBB2Q92870 758 aa23.4■■□□□ 1.34
SHMT1-209ENST00000582653 SMARCAD1Q9H4L7 1026 aa23.4■■□□□ 1.34
SHMT1-209ENST00000582653 EHMT1Q9H9B1 1298 aa23.4■■□□□ 1.34
SHMT1-209ENST00000582653 ARP10275 920 aa23.39■■□□□ 1.33
SHMT1-209ENST00000582653 RPS6KB1P23443 525 aa23.39■■□□□ 1.33
SHMT1-209ENST00000582653 MARK3P27448 753 aa23.39■■□□□ 1.33
SHMT1-209ENST00000582653 RCAN1P53805 252 aa23.39■■□□□ 1.33
SHMT1-209ENST00000582653 TAF2Q6P1X5 1199 aa23.39■■□□□ 1.33
SHMT1-209ENST00000582653 SP7Q8TDD2 431 aaPredicted RBP23.39■■□□□ 1.33
SHMT1-209ENST00000582653 ANO3Q9BYT9 981 aa23.39■■□□□ 1.33
SHMT1-209ENST00000582653 KCNH7Q9NS40 1196 aa23.39■■□□□ 1.33
SHMT1-209ENST00000582653 MTUS1Q9ULD2 1270 aa23.39■■□□□ 1.33
SHMT1-209ENST00000582653 TTC28Q96AY4 2481 aa23.39■■□□□ 1.33
SHMT1-209ENST00000582653 LOC101059915A0A1B0GWI6 518 aaPredicted RBP23.38■■□□□ 1.33
SHMT1-209ENST00000582653 ADAMTS3O15072 1205 aa23.38■■□□□ 1.33
SHMT1-209ENST00000582653 PPFIA3O75145 1194 aa23.38■■□□□ 1.33
SHMT1-209ENST00000582653 REC8O95072 547 aa23.38■■□□□ 1.33
SHMT1-209ENST00000582653 FOSP01100 380 aaPredicted RBP23.38■■□□□ 1.33
SHMT1-209ENST00000582653 CHRNA1P02708 482 aa23.38■■□□□ 1.33
SHMT1-209ENST00000582653 PFKFB3Q16875 520 aaPredicted RBP23.38■■□□□ 1.33
SHMT1-209ENST00000582653 GLG1Q92896 1179 aa23.38■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms