RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 DDX39AO00148 427 aaKnown RBP18.12■□□□□ 0.49
SS18-211ENST00000578954 POLR2DO15514 142 aaKnown RBP18.12■□□□□ 0.49
SS18-211ENST00000578954 ACTN4O43707 911 aaKnown RBP18.12■□□□□ 0.49
SS18-211ENST00000578954 KINO60870 393 aaKnown RBP18.12■□□□□ 0.49
SS18-211ENST00000578954 ATG7O95352 703 aa18.12■□□□□ 0.49
SS18-211ENST00000578954 ZNF865P0CJ78 1059 aaPredicted RBP18.12■□□□□ 0.49
SS18-211ENST00000578954 SPATA31C1P0DKV0 1188 aa18.12■□□□□ 0.49
SS18-211ENST00000578954 NAALADL2Q58DX5 795 aa18.12■□□□□ 0.49
SS18-211ENST00000578954 CELF3Q5SZQ8 465 aaKnown RBP18.12■□□□□ 0.49
SS18-211ENST00000578954 IQSEC1Q6DN90 963 aa18.12■□□□□ 0.49
SS18-211ENST00000578954 MIER3Q7Z3K6 550 aa18.12■□□□□ 0.49
SS18-211ENST00000578954 IQUBQ8NA54 791 aa18.12■□□□□ 0.49
SS18-211ENST00000578954 TRIB2Q92519 343 aa18.12■□□□□ 0.49
SS18-211ENST00000578954 EMID1Q96A84 441 aaPredicted RBP18.12■□□□□ 0.49
SS18-211ENST00000578954 CALML4Q96GE6 196 aa18.12■□□□□ 0.49
SS18-211ENST00000578954 NT5C3AQ9H0P0 336 aa18.12■□□□□ 0.49
SS18-211ENST00000578954 CUEDC2Q9H467 287 aa18.12■□□□□ 0.49
SS18-211ENST00000578954 CLSTN2Q9H4D0 955 aa18.12■□□□□ 0.49
SS18-211ENST00000578954 BCAS3Q9H6U6 928 aa18.12■□□□□ 0.49
SS18-211ENST00000578954 TMEM63CQ9P1W3 806 aa18.12■□□□□ 0.49
SS18-211ENST00000578954 TCEAL9Q9UHQ7 104 aa18.12■□□□□ 0.49
SS18-211ENST00000578954 NKRFO15226 690 aaKnown RBP eCLIP18.11■□□□□ 0.49
SS18-211ENST00000578954 CHMP2AO43633 222 aa18.11■□□□□ 0.49
SS18-211ENST00000578954 MED24O75448 989 aa18.11■□□□□ 0.49
SS18-211ENST00000578954 GGPS1O95749 300 aa18.11■□□□□ 0.49
SS18-211ENST00000578954 SLFN14P0C7P3 912 aa18.11■□□□□ 0.49
SS18-211ENST00000578954 TXNP10599 105 aaKnown RBP18.11■□□□□ 0.49
SS18-211ENST00000578954 PLCG1P19174 1290 aa18.11■□□□□ 0.49
SS18-211ENST00000578954 CYP2C19P33261 490 aa18.11■□□□□ 0.49
SS18-211ENST00000578954 CCT6AP40227 531 aaKnown RBP18.11■□□□□ 0.49
SS18-211ENST00000578954 ECM1Q16610 540 aa18.11■□□□□ 0.49
SS18-211ENST00000578954 LY6KQ17RY6 165 aa18.11■□□□□ 0.49
SS18-211ENST00000578954 CCDC183Q5T5S1 534 aa18.11■□□□□ 0.49
SS18-211ENST00000578954 KRBA2Q6ZNG9 492 aa18.11■□□□□ 0.49
SS18-211ENST00000578954 CYFIP1Q7L576 1253 aa18.11■□□□□ 0.49
SS18-211ENST00000578954 CATSPER3Q86XQ3 398 aa18.11■□□□□ 0.49
SS18-211ENST00000578954 LRRC15Q8TF66 581 aa18.11■□□□□ 0.49
SS18-211ENST00000578954 SYAP1Q96A49 352 aaPredicted RBP18.11■□□□□ 0.49
SS18-211ENST00000578954 STK17AQ9UEE5 414 aa18.11■□□□□ 0.49
SS18-211ENST00000578954 DOCK5Q9H7D0 1870 aa18.11■□□□□ 0.49
SS18-211ENST00000578954 SLITRK3O94933 977 aa18.1■□□□□ 0.49
SS18-211ENST00000578954 ADCYAP1R1P41586 468 aa18.1■□□□□ 0.49
SS18-211ENST00000578954 ACTR2P61160 394 aa18.1■□□□□ 0.49
SS18-211ENST00000578954 ARHGAP1Q07960 439 aa18.1■□□□□ 0.49
SS18-211ENST00000578954 LONRF3Q496Y0 759 aa18.1■□□□□ 0.49
SS18-211ENST00000578954 DUSP28Q4G0W2 176 aa18.1■□□□□ 0.49
SS18-211ENST00000578954 RRAGBQ5VZM2 374 aa18.1■□□□□ 0.49
SS18-211ENST00000578954 MFSD14CQ5VZR4 134 aa18.1■□□□□ 0.49
SS18-211ENST00000578954 CAVIN1Q6NZI2 390 aaKnown RBP18.1■□□□□ 0.49
SS18-211ENST00000578954 PDXDC2PQ6P474 469 aa18.1■□□□□ 0.49
SS18-211ENST00000578954 ABHD15Q6UXT9 468 aa18.1■□□□□ 0.49
SS18-211ENST00000578954 SH3RF1Q7Z6J0 888 aa18.1■□□□□ 0.49
SS18-211ENST00000578954 PDILTQ8N807 584 aa18.1■□□□□ 0.49
SS18-211ENST00000578954 PXYLP1Q8TE99 480 aa18.1■□□□□ 0.49
SS18-211ENST00000578954 DHX58Q96C10 678 aa18.1■□□□□ 0.49
SS18-211ENST00000578954 MAGEF1Q9HAY2 307 aa18.1■□□□□ 0.49
SS18-211ENST00000578954 BLOC1S4Q9NUP1 217 aa18.1■□□□□ 0.49
SS18-211ENST00000578954 SERTAD1Q9UHV2 236 aa18.1■□□□□ 0.49
SS18-211ENST00000578954 ZHX1Q9UKY1 873 aaPredicted RBP18.1■□□□□ 0.49
SS18-211ENST00000578954 PCDHA10Q9Y5I2 948 aa18.1■□□□□ 0.49
SS18-211ENST00000578954 IGKV6D-21A0A0A0MT36 114 aa18.09■□□□□ 0.49
SS18-211ENST00000578954 POTEB3A0JP26 581 aa18.09■□□□□ 0.49
SS18-211ENST00000578954 LYPLA2O95372 231 aa18.09■□□□□ 0.49
SS18-211ENST00000578954 GH1P01241 217 aa18.09■□□□□ 0.49
SS18-211ENST00000578954 P4HBP07237 508 aaKnown RBP18.09■□□□□ 0.49
SS18-211ENST00000578954 CYBAP13498 195 aa18.09■□□□□ 0.49
SS18-211ENST00000578954 STAT6P42226 847 aa18.09■□□□□ 0.49
SS18-211ENST00000578954 CCDC144BQ3MJ40 725 aa18.09■□□□□ 0.49
SS18-211ENST00000578954 POTEBQ6S5H4 581 aa18.09■□□□□ 0.49
SS18-211ENST00000578954 RBM43Q6ZSC3 357 aaKnown RBP18.09■□□□□ 0.49
SS18-211ENST00000578954 DYDC2Q96IM9 177 aa18.09■□□□□ 0.49
SS18-211ENST00000578954 CDK5RAP3Q96JB5 506 aa18.09■□□□□ 0.49
SS18-211ENST00000578954 PANK2Q9BZ23 570 aa18.09■□□□□ 0.49
SS18-211ENST00000578954 NUP62CLQ9H1M0 184 aa18.09■□□□□ 0.49
SS18-211ENST00000578954 IGSF9BQ9UPX0 1349 aa18.08■□□□□ 0.49
SS18-211ENST00000578954 C11orf97A0A1B0GVM6 126 aaPredicted RBP18.08■□□□□ 0.48
SS18-211ENST00000578954 CTAGE5O15320 804 aa18.08■□□□□ 0.48
SS18-211ENST00000578954 PSAPP07602 524 aa18.08■□□□□ 0.48
SS18-211ENST00000578954 SUPT20HL2P0C7V6 817 aa18.08■□□□□ 0.48
SS18-211ENST00000578954 SMPD1P17405 629 aa18.08■□□□□ 0.48
SS18-211ENST00000578954 LAMC2Q13753 1193 aa18.08■□□□□ 0.48
SS18-211ENST00000578954 PRAMEF19Q5SWL8 479 aa18.08■□□□□ 0.48
SS18-211ENST00000578954 TMEM63BQ5T3F8 832 aa18.08■□□□□ 0.48
SS18-211ENST00000578954 KANK3Q6NY19 840 aa18.08■□□□□ 0.48
SS18-211ENST00000578954 MIS18BP1Q6P0N0 1132 aa18.08■□□□□ 0.48
SS18-211ENST00000578954 KCNK18Q7Z418 384 aa18.08■□□□□ 0.48
SS18-211ENST00000578954 DHX37Q8IY37 1157 aaKnown RBP18.08■□□□□ 0.48
SS18-211ENST00000578954 CNNM3Q8NE01 707 aa18.08■□□□□ 0.48
SS18-211ENST00000578954 RASSF8Q8NHQ8 419 aa18.08■□□□□ 0.48
SS18-211ENST00000578954 RAD54LQ92698 747 aa18.08■□□□□ 0.48
SS18-211ENST00000578954 COPS5Q92905 334 aa18.08■□□□□ 0.48
SS18-211ENST00000578954 GPR20Q99678 358 aa18.08■□□□□ 0.48
SS18-211ENST00000578954 LXNQ9BS40 222 aa18.08■□□□□ 0.48
SS18-211ENST00000578954 MLXIPQ9HAP2 919 aa18.08■□□□□ 0.48
SS18-211ENST00000578954 KBTBD4Q9NVX7 518 aa18.08■□□□□ 0.48
SS18-211ENST00000578954 RGL1Q9NZL6 768 aa18.08■□□□□ 0.48
SS18-211ENST00000578954 TSKSQ9UJT2 592 aa18.08■□□□□ 0.48
SS18-211ENST00000578954 GNEQ9Y223 722 aaKnown RBP18.08■□□□□ 0.48
SS18-211ENST00000578954 TELO2Q9Y4R8 837 aa18.08■□□□□ 0.48
SS18-211ENST00000578954 WDR81Q562E7 1941 aa18.08■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms