RNA–Protein interactions for RNA: ENST00000575431.1

CCDC40-214, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-214ENST00000575431 BRAPQ7Z569 592 aa10.81□□□□□ -0.68
CCDC40-214ENST00000575431 SESTD1Q86VW0 696 aa10.81□□□□□ -0.68
CCDC40-214ENST00000575431 C7orf31Q8N865 590 aa10.81□□□□□ -0.68
CCDC40-214ENST00000575431 C16orf70Q9BSU1 422 aa10.81□□□□□ -0.68
CCDC40-214ENST00000575431 TUT1Q9H6E5 874 aaKnown RBP10.81□□□□□ -0.68
CCDC40-214ENST00000575431 BCAS3Q9H6U6 928 aa10.81□□□□□ -0.68
CCDC40-214ENST00000575431 KCNMB3Q9NPA1 279 aa10.81□□□□□ -0.68
CCDC40-214ENST00000575431 ERAP1Q9NZ08 941 aa10.81□□□□□ -0.68
CCDC40-214ENST00000575431 PRKAG2Q9UGJ0 569 aa10.81□□□□□ -0.68
CCDC40-214ENST00000575431 PCDHA10Q9Y5I2 948 aa10.81□□□□□ -0.68
CCDC40-214ENST00000575431 HTTP42858 3142 aa10.8□□□□□ -0.68
CCDC40-214ENST00000575431 SCN10AQ9Y5Y9 1956 aa10.8□□□□□ -0.68
CCDC40-214ENST00000575431 FAM205CA6NFA0 338 aa10.8□□□□□ -0.68
CCDC40-214ENST00000575431 WDR64B1ANS9 1081 aa10.8□□□□□ -0.68
CCDC40-214ENST00000575431 SORBS3O60504 671 aa10.8□□□□□ -0.68
CCDC40-214ENST00000575431 LGR5O75473 907 aa10.8□□□□□ -0.68
CCDC40-214ENST00000575431 PSMD10O75832 226 aa10.8□□□□□ -0.68
CCDC40-214ENST00000575431 PSAPP07602 524 aa10.8□□□□□ -0.68
CCDC40-214ENST00000575431 GNAT1P11488 350 aa10.8□□□□□ -0.68
CCDC40-214ENST00000575431 SYT1P21579 422 aa10.8□□□□□ -0.68
CCDC40-214ENST00000575431 PSEN2P49810 448 aa10.8□□□□□ -0.68
CCDC40-214ENST00000575431 STAT5BP51692 787 aa10.8□□□□□ -0.68
CCDC40-214ENST00000575431 SP4Q02446 784 aa10.8□□□□□ -0.68
CCDC40-214ENST00000575431 TLE2Q04725 743 aa10.8□□□□□ -0.68
CCDC40-214ENST00000575431 MFSD10Q14728 455 aa10.8□□□□□ -0.68
CCDC40-214ENST00000575431 CALCRLQ16602 461 aa10.8□□□□□ -0.68
CCDC40-214ENST00000575431 KIAA0753Q2KHM9 967 aa10.8□□□□□ -0.68
CCDC40-214ENST00000575431 TRIM60Q495X7 471 aa10.8□□□□□ -0.68
CCDC40-214ENST00000575431 FAM160B1Q5W0V3 765 aa10.8□□□□□ -0.68
CCDC40-214ENST00000575431 PLPPR4Q7Z2D5 763 aa10.8□□□□□ -0.68
CCDC40-214ENST00000575431 ETNPPLQ8TBG4 499 aa10.8□□□□□ -0.68
CCDC40-214ENST00000575431 AFAP1L1Q8TED9 768 aa10.8□□□□□ -0.68
CCDC40-214ENST00000575431 KAT2BQ92831 832 aa10.8□□□□□ -0.68
CCDC40-214ENST00000575431 GLG1Q92896 1179 aa10.8□□□□□ -0.68
CCDC40-214ENST00000575431 ATP11BQ9Y2G3 1177 aa10.8□□□□□ -0.68
CCDC40-214ENST00000575431 SAMM50Q9Y512 469 aa10.8□□□□□ -0.68
CCDC40-214ENST00000575431 DOCK5Q9H7D0 1870 aa10.8□□□□□ -0.68
CCDC40-214ENST00000575431 IGKV6D-21A0A0A0MT36 114 aa10.79□□□□□ -0.68
CCDC40-214ENST00000575431 VPS37CA5D8V6 355 aaPredicted RBP10.79□□□□□ -0.68
CCDC40-214ENST00000575431 KIF28PB7ZC32 967 aa10.79□□□□□ -0.68
CCDC40-214ENST00000575431 DDX39AO00148 427 aaKnown RBP10.79□□□□□ -0.68
CCDC40-214ENST00000575431 LAD1O00515 517 aa10.79□□□□□ -0.68
CCDC40-214ENST00000575431 SLC37A4O43826 429 aa10.79□□□□□ -0.68
CCDC40-214ENST00000575431 NEMFO60524 1076 aa10.79□□□□□ -0.68
CCDC40-214ENST00000575431 PQBP1O60828 265 aaKnown RBP10.79□□□□□ -0.68
CCDC40-214ENST00000575431 DKC1O60832 514 aaKnown RBP eCLIP10.79□□□□□ -0.68
CCDC40-214ENST00000575431 CCNE2O96020 404 aa10.79□□□□□ -0.68
CCDC40-214ENST00000575431 CLTBP09497 229 aa10.79□□□□□ -0.68
CCDC40-214ENST00000575431 ZNF286BP0CG31 522 aa10.79□□□□□ -0.68
CCDC40-214ENST00000575431 PSMC6P62333 389 aa10.79□□□□□ -0.68
CCDC40-214ENST00000575431 PPP2R5CQ13362 524 aa10.79□□□□□ -0.68
CCDC40-214ENST00000575431 NBPF20Q3BBV1 942 aa10.79□□□□□ -0.68
CCDC40-214ENST00000575431 FAM47CQ5HY64 1035 aa10.79□□□□□ -0.68
CCDC40-214ENST00000575431 TTC38Q5R3I4 469 aa10.79□□□□□ -0.68
CCDC40-214ENST00000575431 UTP14CQ5TAP6 766 aaKnown RBP10.79□□□□□ -0.68
CCDC40-214ENST00000575431 ABHD15Q6UXT9 468 aa10.79□□□□□ -0.68
CCDC40-214ENST00000575431 FAM126BQ8IXS8 530 aa10.79□□□□□ -0.68
CCDC40-214ENST00000575431 ZSCAN16Q9H4T2 348 aaPredicted RBP10.79□□□□□ -0.68
CCDC40-214ENST00000575431 DISC1Q9NRI5 854 aa10.79□□□□□ -0.68
CCDC40-214ENST00000575431 PCDHA12Q9UN75 941 aa10.79□□□□□ -0.68
CCDC40-214ENST00000575431 GRIN2DO15399 1336 aa10.79□□□□□ -0.68
CCDC40-214ENST00000575431 NRCAMQ92823 1304 aa10.79□□□□□ -0.68
CCDC40-214ENST00000575431 BACH1O14867 736 aa10.78□□□□□ -0.68
CCDC40-214ENST00000575431 STX6O43752 255 aa10.78□□□□□ -0.68
CCDC40-214ENST00000575431 BMP15O95972 392 aa10.78□□□□□ -0.68
CCDC40-214ENST00000575431 CD4P01730 458 aa10.78□□□□□ -0.68
CCDC40-214ENST00000575431 ATP2B1P20020 1258 aa10.78□□□□□ -0.68
CCDC40-214ENST00000575431 MCM7P33993 719 aa10.78□□□□□ -0.68
CCDC40-214ENST00000575431 B3GNT9Q6UX72 402 aa10.78□□□□□ -0.68
CCDC40-214ENST00000575431 MIER3Q7Z3K6 550 aa10.78□□□□□ -0.68
CCDC40-214ENST00000575431 POTEDQ86YR6 584 aa10.78□□□□□ -0.68
CCDC40-214ENST00000575431 C7orf61Q8IZ16 206 aa10.78□□□□□ -0.68
CCDC40-214ENST00000575431 HAS1Q92839 578 aa10.78□□□□□ -0.68
CCDC40-214ENST00000575431 ATP6V0A1Q93050 837 aa10.78□□□□□ -0.68
CCDC40-214ENST00000575431 MTMR9Q96QG7 549 aa10.78□□□□□ -0.68
CCDC40-214ENST00000575431 ZNF302Q9NR11 478 aa10.78□□□□□ -0.68
CCDC40-214ENST00000575431 GTF2IRD1Q9UHL9 959 aa10.78□□□□□ -0.68
CCDC40-214ENST00000575431 NOD1Q9Y239 953 aa10.78□□□□□ -0.68
CCDC40-214ENST00000575431 MAFBQ9Y5Q3 323 aaPredicted RBP10.78□□□□□ -0.68
CCDC40-214ENST00000575431 RRN3P2A6NIE6 340 aa10.77□□□□□ -0.69
CCDC40-214ENST00000575431 KIAA0355O15063 1070 aa10.77□□□□□ -0.69
CCDC40-214ENST00000575431 RPLP2P05387 115 aaKnown RBP10.77□□□□□ -0.69
CCDC40-214ENST00000575431 OR52Z1P0C646 297 aa10.77□□□□□ -0.69
CCDC40-214ENST00000575431 CHMP4BP1P59074 171 aa10.77□□□□□ -0.69
CCDC40-214ENST00000575431 FAAP100Q0VG06 881 aa10.77□□□□□ -0.69
CCDC40-214ENST00000575431 ZNF174Q15697 407 aa10.77□□□□□ -0.69
CCDC40-214ENST00000575431 PTGISQ16647 500 aa10.77□□□□□ -0.69
CCDC40-214ENST00000575431 SWSAP1Q6NVH7 229 aa10.77□□□□□ -0.69
CCDC40-214ENST00000575431 PDXDC2PQ6P474 469 aa10.77□□□□□ -0.69
CCDC40-214ENST00000575431 CCDC155Q8N6L0 562 aa10.77□□□□□ -0.69
CCDC40-214ENST00000575431 BBXQ8WY36 941 aaPredicted RBP10.77□□□□□ -0.69
CCDC40-214ENST00000575431 FAM167AQ96KS9 214 aa10.77□□□□□ -0.69
CCDC40-214ENST00000575431 RAB34Q9BZG1 259 aa10.77□□□□□ -0.69
CCDC40-214ENST00000575431 UNC45AQ9H3U1 944 aa10.77□□□□□ -0.69
CCDC40-214ENST00000575431 TTC12Q9H892 705 aaPredicted RBP10.77□□□□□ -0.69
CCDC40-214ENST00000575431 FOXD4L1Q9NU39 408 aa10.77□□□□□ -0.69
CCDC40-214ENST00000575431 TMEM39AQ9NV64 488 aa10.77□□□□□ -0.69
CCDC40-214ENST00000575431 HDAC6Q9UBN7 1215 aa10.77□□□□□ -0.69
CCDC40-214ENST00000575431 CEP131Q9UPN4 1083 aa10.77□□□□□ -0.69
CCDC40-214ENST00000575431 STK24Q9Y6E0 443 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms