RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 SEPT1Q8WYJ6 367 aa20.52■□□□□ 0.88
CCDC40-213ENST00000574933 GJA10Q969M2 543 aa20.52■□□□□ 0.88
CCDC40-213ENST00000574933 PCDHA12Q9UN75 941 aa20.52■□□□□ 0.88
CCDC40-213ENST00000574933 CLIC4Q9Y696 253 aa20.52■□□□□ 0.88
CCDC40-213ENST00000574933 LOXHD1Q8IVV2 1947 aa20.51■□□□□ 0.87
CCDC40-213ENST00000574933 IGKV6D-21A0A0A0MT36 114 aa20.51■□□□□ 0.87
CCDC40-213ENST00000574933 DNM1LO00429 736 aa20.51■□□□□ 0.87
CCDC40-213ENST00000574933 ZEB2O60315 1214 aa20.51■□□□□ 0.87
CCDC40-213ENST00000574933 SFNP31947 248 aa20.51■□□□□ 0.87
CCDC40-213ENST00000574933 MNX1P50219 401 aaPredicted RBP20.51■□□□□ 0.87
CCDC40-213ENST00000574933 FXR2P51116 673 aaKnown RBP eCLIP20.51■□□□□ 0.87
CCDC40-213ENST00000574933 BEX3Q00994 111 aa20.51■□□□□ 0.87
CCDC40-213ENST00000574933 SLC39A14Q15043 492 aa20.51■□□□□ 0.87
CCDC40-213ENST00000574933 DGKDQ16760 1214 aa20.51■□□□□ 0.87
CCDC40-213ENST00000574933 GNASQ5JWF2 1037 aa20.51■□□□□ 0.87
CCDC40-213ENST00000574933 ABHD15Q6UXT9 468 aa20.51■□□□□ 0.87
CCDC40-213ENST00000574933 UIMC1Q96RL1 719 aa20.51■□□□□ 0.87
CCDC40-213ENST00000574933 UNC45AQ9H3U1 944 aa20.51■□□□□ 0.87
CCDC40-213ENST00000574933 TTC12Q9H892 705 aaPredicted RBP20.51■□□□□ 0.87
CCDC40-213ENST00000574933 PHF24Q9UPV7 400 aa20.51■□□□□ 0.87
CCDC40-213ENST00000574933 TELO2Q9Y4R8 837 aa20.51■□□□□ 0.87
CCDC40-213ENST00000574933 MOXD2PA6NHM9 499 aa20.5■□□□□ 0.87
CCDC40-213ENST00000574933 WDR64B1ANS9 1081 aa20.5■□□□□ 0.87
CCDC40-213ENST00000574933 DDX39AO00148 427 aaKnown RBP20.5■□□□□ 0.87
CCDC40-213ENST00000574933 NOP56O00567 594 aaKnown RBP20.5■□□□□ 0.87
CCDC40-213ENST00000574933 MARCH6O60337 910 aa20.5■□□□□ 0.87
CCDC40-213ENST00000574933 LGR5O75473 907 aa20.5■□□□□ 0.87
CCDC40-213ENST00000574933 YEATS4O95619 227 aa20.5■□□□□ 0.87
CCDC40-213ENST00000574933 TFRCP02786 760 aaKnown RBP20.5■□□□□ 0.87
CCDC40-213ENST00000574933 TXKP42681 527 aa20.5■□□□□ 0.87
CCDC40-213ENST00000574933 JAK3P52333 1124 aa20.5■□□□□ 0.87
CCDC40-213ENST00000574933 KCNA10Q16322 511 aa20.5■□□□□ 0.87
CCDC40-213ENST00000574933 FTOQ9C0B1 505 aaKnown RBP eCLIP20.5■□□□□ 0.87
CCDC40-213ENST00000574933 TCEAL9Q9UHQ7 104 aa20.5■□□□□ 0.87
CCDC40-213ENST00000574933 PCDHA10Q9Y5I2 948 aa20.5■□□□□ 0.87
CCDC40-213ENST00000574933 EMSYQ7Z589 1322 aa20.5■□□□□ 0.87
CCDC40-213ENST00000574933 SORBS3O60504 671 aa20.49■□□□□ 0.87
CCDC40-213ENST00000574933 PURAQ00577 322 aaKnown RBP20.49■□□□□ 0.87
CCDC40-213ENST00000574933 DNM1Q05193 864 aaKnown RBP20.49■□□□□ 0.87
CCDC40-213ENST00000574933 PDIA5Q14554 519 aa20.49■□□□□ 0.87
CCDC40-213ENST00000574933 LINC00301Q8NCQ3 95 aa20.49■□□□□ 0.87
CCDC40-213ENST00000574933 CFAP45Q9UL16 551 aa20.49■□□□□ 0.87
CCDC40-213ENST00000574933 KBTBD13C9JR72 458 aa20.48■□□□□ 0.87
CCDC40-213ENST00000574933 CABYRO75952 493 aa20.48■□□□□ 0.87
CCDC40-213ENST00000574933 ASGR1P07306 291 aa20.48■□□□□ 0.87
CCDC40-213ENST00000574933 SUPT20HL2P0C7V6 817 aa20.48■□□□□ 0.87
CCDC40-213ENST00000574933 TCF7P36402 384 aaPredicted RBP20.48■□□□□ 0.87
CCDC40-213ENST00000574933 IL17AQ16552 155 aa20.48■□□□□ 0.87
CCDC40-213ENST00000574933 IGSF22Q8N9C0 903 aa20.48■□□□□ 0.87
CCDC40-213ENST00000574933 AFAP1L1Q8TED9 768 aa20.48■□□□□ 0.87
CCDC40-213ENST00000574933 PCYT2Q99447 389 aa20.48■□□□□ 0.87
CCDC40-213ENST00000574933 C16orf70Q9BSU1 422 aa20.48■□□□□ 0.87
CCDC40-213ENST00000574933 DISC1Q9NRI5 854 aa20.48■□□□□ 0.87
CCDC40-213ENST00000574933 TFIP11Q9UBB9 837 aaKnown RBP20.48■□□□□ 0.87
CCDC40-213ENST00000574933 BRCA2P51587 3418 aa20.47■□□□□ 0.87
CCDC40-213ENST00000574933 EML1O00423 815 aa20.47■□□□□ 0.87
CCDC40-213ENST00000574933 F2P00734 622 aa20.47■□□□□ 0.87
CCDC40-213ENST00000574933 LGALS2P05162 132 aa20.47■□□□□ 0.87
CCDC40-213ENST00000574933 PSAPP07602 524 aa20.47■□□□□ 0.87
CCDC40-213ENST00000574933 COL6A1P12109 1028 aa20.47■□□□□ 0.87
CCDC40-213ENST00000574933 ACLYP53396 1101 aa20.47■□□□□ 0.87
CCDC40-213ENST00000574933 SP4Q02446 784 aa20.47■□□□□ 0.87
CCDC40-213ENST00000574933 EPHA7Q15375 998 aa20.47■□□□□ 0.87
CCDC40-213ENST00000574933 TMEM266Q2M3C6 531 aa20.47■□□□□ 0.87
CCDC40-213ENST00000574933 MIS18BP1Q6P0N0 1132 aa20.47■□□□□ 0.87
CCDC40-213ENST00000574933 DTHD1Q6ZMT9 781 aa20.47■□□□□ 0.87
CCDC40-213ENST00000574933 MIER3Q7Z3K6 550 aa20.47■□□□□ 0.87
CCDC40-213ENST00000574933 KAT2BQ92831 832 aa20.47■□□□□ 0.87
CCDC40-213ENST00000574933 FERMT2Q96AC1 680 aa20.47■□□□□ 0.87
CCDC40-213ENST00000574933 RCOR1Q9UKL0 485 aa20.47■□□□□ 0.87
CCDC40-213ENST00000574933 EVPLQ92817 2033 aa20.46■□□□□ 0.87
CCDC40-213ENST00000574933 HAS3O00219 553 aa20.46■□□□□ 0.87
CCDC40-213ENST00000574933 PPP6R2O75170 966 aa20.46■□□□□ 0.87
CCDC40-213ENST00000574933 TECP42680 631 aa20.46■□□□□ 0.87
CCDC40-213ENST00000574933 KRT85P78386 507 aa20.46■□□□□ 0.87
CCDC40-213ENST00000574933 STK38Q15208 465 aa20.46■□□□□ 0.87
CCDC40-213ENST00000574933 PLPPR4Q7Z2D5 763 aa20.46■□□□□ 0.87
CCDC40-213ENST00000574933 UBE2Q1Q7Z7E8 422 aa20.46■□□□□ 0.87
CCDC40-213ENST00000574933 MTG1Q9BT17 334 aaPredicted RBP20.46■□□□□ 0.87
CCDC40-213ENST00000574933 RAB34Q9BZG1 259 aa20.46■□□□□ 0.87
CCDC40-213ENST00000574933 SMARCAD1Q9H4L7 1026 aa20.46■□□□□ 0.87
CCDC40-213ENST00000574933 SRPRBQ9Y5M8 271 aaKnown RBP20.46■□□□□ 0.87
CCDC40-213ENST00000574933 ALPK3Q96L96 1907 aa20.46■□□□□ 0.87
CCDC40-213ENST00000574933 ARID2Q68CP9 1835 aa20.46■□□□□ 0.87
CCDC40-213ENST00000574933 SPTLC2O15270 562 aa20.45■□□□□ 0.86
CCDC40-213ENST00000574933 CHMP2AO43633 222 aa20.45■□□□□ 0.86
CCDC40-213ENST00000574933 MYL3P08590 195 aa20.45■□□□□ 0.86
CCDC40-213ENST00000574933 EN2P19622 333 aaPredicted RBP20.45■□□□□ 0.86
CCDC40-213ENST00000574933 SLC26A2P50443 739 aa20.45■□□□□ 0.86
CCDC40-213ENST00000574933 CEBPZQ03701 1054 aaKnown RBP20.45■□□□□ 0.86
CCDC40-213ENST00000574933 FOXD4L6Q3SYB3 417 aaPredicted RBP20.45■□□□□ 0.86
CCDC40-213ENST00000574933 CXCL17Q6UXB2 119 aa20.45■□□□□ 0.86
CCDC40-213ENST00000574933 FOXD4L3Q6VB84 417 aaPredicted RBP20.45■□□□□ 0.86
CCDC40-213ENST00000574933 CCDC60Q8IWA6 550 aaPredicted RBP20.45■□□□□ 0.86
CCDC40-213ENST00000574933 NEK9Q8TD19 979 aa20.45■□□□□ 0.86
CCDC40-213ENST00000574933 FBXO2Q9UK22 296 aaPredicted RBP20.45■□□□□ 0.86
CCDC40-213ENST00000574933 MAFBQ9Y5Q3 323 aaPredicted RBP20.45■□□□□ 0.86
CCDC40-213ENST00000574933 IGSF9BQ9UPX0 1349 aa20.45■□□□□ 0.86
CCDC40-213ENST00000574933 A0A1W2PQ45 241 aaPredicted RBP20.44■□□□□ 0.86
CCDC40-213ENST00000574933 A0A1W2PQY0 241 aa20.44■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms