RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 A0A087X0B3 334 aa10.49□□□□□ -0.73
CCDC40-212ENST00000574799 PDE4DQ08499 809 aa10.49□□□□□ -0.73
CCDC40-212ENST00000574799 LMNTD2Q8IXW0 634 aa10.49□□□□□ -0.73
CCDC40-212ENST00000574799 OSBPL7Q9BZF2 842 aa10.49□□□□□ -0.73
CCDC40-212ENST00000574799 TSKSQ9UJT2 592 aa10.49□□□□□ -0.73
CCDC40-212ENST00000574799 TRPC5Q9UL62 973 aaPredicted RBP10.49□□□□□ -0.73
CCDC40-212ENST00000574799 LRRD1A4D1F6 860 aa10.49□□□□□ -0.73
CCDC40-212ENST00000574799 EVI5O60447 810 aa10.49□□□□□ -0.73
CCDC40-212ENST00000574799 SNUPNO95149 360 aaKnown RBP10.49□□□□□ -0.73
CCDC40-212ENST00000574799 THEMIS2Q5TEJ8 643 aa10.49□□□□□ -0.73
CCDC40-212ENST00000574799 TMC4Q7Z404 712 aa10.49□□□□□ -0.73
CCDC40-212ENST00000574799 RPUSD2Q8IZ73 545 aaKnown RBP10.49□□□□□ -0.73
CCDC40-212ENST00000574799 MGARPQ8TDB4 240 aa10.49□□□□□ -0.73
CCDC40-212ENST00000574799 TNFRSF25Q93038 417 aa10.49□□□□□ -0.73
CCDC40-212ENST00000574799 CAVIN3Q969G5 261 aa10.49□□□□□ -0.73
CCDC40-212ENST00000574799 AKT1S1Q96B36 256 aa10.49□□□□□ -0.73
CCDC40-212ENST00000574799 ETAA1Q9NY74 926 aa10.49□□□□□ -0.73
CCDC40-212ENST00000574799 TNKSO95271 1327 aa10.48□□□□□ -0.73
CCDC40-212ENST00000574799 BICDL2A1A5D9 508 aa10.48□□□□□ -0.73
CCDC40-212ENST00000574799 HIBADHP31937 336 aaKnown RBP10.48□□□□□ -0.73
CCDC40-212ENST00000574799 TMED8Q6PL24 325 aaPredicted RBP10.48□□□□□ -0.73
CCDC40-212ENST00000574799 SLC30A9Q6PML9 568 aa10.48□□□□□ -0.73
CCDC40-212ENST00000574799 CRACR2BQ8N4Y2 399 aaPredicted RBP10.48□□□□□ -0.73
CCDC40-212ENST00000574799 MDM1Q8TC05 714 aa10.48□□□□□ -0.73
CCDC40-212ENST00000574799 FBF1Q8TES7 1133 aa10.48□□□□□ -0.73
CCDC40-212ENST00000574799 RAPGEF5Q92565 580 aa10.48□□□□□ -0.73
CCDC40-212ENST00000574799 CNNM2Q9H8M5 875 aa10.48□□□□□ -0.73
CCDC40-212ENST00000574799 HIP1RO75146 1068 aa10.48□□□□□ -0.73
CCDC40-212ENST00000574799 RPS6KA1Q15418 735 aa10.48□□□□□ -0.73
CCDC40-212ENST00000574799 QPCTQ16769 361 aa10.48□□□□□ -0.73
CCDC40-212ENST00000574799 DDX42Q86XP3 938 aaKnown RBP eCLIP10.48□□□□□ -0.73
CCDC40-212ENST00000574799 CCHCR1Q8TD31 782 aa10.48□□□□□ -0.73
CCDC40-212ENST00000574799 CHMP6Q96FZ7 201 aa10.48□□□□□ -0.73
CCDC40-212ENST00000574799 IFT74Q96LB3 600 aa10.48□□□□□ -0.73
CCDC40-212ENST00000574799 TAF1DQ9H5J8 278 aaPredicted RBP10.48□□□□□ -0.73
CCDC40-212ENST00000574799 QTRT2Q9H974 415 aaKnown RBP10.48□□□□□ -0.73
CCDC40-212ENST00000574799 EME2A4GXA9 379 aaPredicted RBP10.48□□□□□ -0.73
CCDC40-212ENST00000574799 LUC7L3O95232 432 aaKnown RBP10.48□□□□□ -0.73
CCDC40-212ENST00000574799 PLEKHA8P1O95397 391 aa10.48□□□□□ -0.73
CCDC40-212ENST00000574799 MTMR3Q13615 1198 aa10.48□□□□□ -0.73
CCDC40-212ENST00000574799 NBPF20Q3BBV1 942 aa10.48□□□□□ -0.73
CCDC40-212ENST00000574799 CATIPQ7Z7H3 387 aa10.48□□□□□ -0.73
CCDC40-212ENST00000574799 FANCBQ8NB91 859 aa10.48□□□□□ -0.73
CCDC40-212ENST00000574799 ZNF483Q8TF39 744 aaPredicted RBP10.48□□□□□ -0.73
CCDC40-212ENST00000574799 DNAJC7Q99615 494 aa10.48□□□□□ -0.73
CCDC40-212ENST00000574799 RTFDC1Q9BY42 306 aaPredicted RBP10.48□□□□□ -0.73
CCDC40-212ENST00000574799 SH2D4AQ9H788 454 aa10.48□□□□□ -0.73
CCDC40-212ENST00000574799 ATP8A1Q9Y2Q0 1164 aa10.48□□□□□ -0.73
CCDC40-212ENST00000574799 CAND2O75155 1236 aa10.47□□□□□ -0.73
CCDC40-212ENST00000574799 PDHA1P08559 390 aa10.47□□□□□ -0.73
CCDC40-212ENST00000574799 IL1R1P14778 569 aa10.47□□□□□ -0.73
CCDC40-212ENST00000574799 ELF3P78545 371 aaPredicted RBP10.47□□□□□ -0.73
CCDC40-212ENST00000574799 DHX9Q08211 1270 aaKnown RBP10.47□□□□□ -0.73
CCDC40-212ENST00000574799 SNX1Q13596 522 aa10.47□□□□□ -0.73
CCDC40-212ENST00000574799 KCTD19Q17RG1 926 aaPredicted RBP10.47□□□□□ -0.73
CCDC40-212ENST00000574799 WDR59Q6PJI9 974 aa10.47□□□□□ -0.73
CCDC40-212ENST00000574799 MAEAQ7L5Y9 396 aa10.47□□□□□ -0.73
CCDC40-212ENST00000574799 ZNF654Q8IZM8 581 aa10.47□□□□□ -0.73
CCDC40-212ENST00000574799 RETREG2Q8NC44 543 aa10.47□□□□□ -0.73
CCDC40-212ENST00000574799 CASKIN2Q8WXE0 1202 aa10.47□□□□□ -0.73
CCDC40-212ENST00000574799 RUBCNQ92622 972 aa10.47□□□□□ -0.73
CCDC40-212ENST00000574799 MTA3Q9BTC8 594 aa10.47□□□□□ -0.73
CCDC40-212ENST00000574799 AP1M1Q9BXS5 423 aa10.47□□□□□ -0.73
CCDC40-212ENST00000574799 C15orf41Q9Y2V0 281 aa10.47□□□□□ -0.73
CCDC40-212ENST00000574799 A0A1W2PQC6 194 aa10.47□□□□□ -0.73
CCDC40-212ENST00000574799 CCT8L1PA6NM43 557 aa10.47□□□□□ -0.73
CCDC40-212ENST00000574799 MMEP08473 750 aa10.47□□□□□ -0.73
CCDC40-212ENST00000574799 ADRA2BP18089 450 aa10.47□□□□□ -0.73
CCDC40-212ENST00000574799 HOXA10P31260 410 aaPredicted RBP10.47□□□□□ -0.73
CCDC40-212ENST00000574799 RFC4P35249 363 aa10.47□□□□□ -0.73
CCDC40-212ENST00000574799 GFPT1Q06210 699 aaPredicted RBP10.47□□□□□ -0.73
CCDC40-212ENST00000574799 BIRC3Q13489 604 aa10.47□□□□□ -0.73
CCDC40-212ENST00000574799 SLMAPQ14BN4 828 aa10.47□□□□□ -0.73
CCDC40-212ENST00000574799 DIXDC1Q155Q3 683 aa10.47□□□□□ -0.73
CCDC40-212ENST00000574799 TMTC2Q8N394 836 aa10.47□□□□□ -0.73
CCDC40-212ENST00000574799 SH3RF3Q8TEJ3 882 aaPredicted RBP10.47□□□□□ -0.73
CCDC40-212ENST00000574799 P3H4Q92791 437 aa10.47□□□□□ -0.73
CCDC40-212ENST00000574799 OSBPL1AQ9BXW6 950 aa10.47□□□□□ -0.73
CCDC40-212ENST00000574799 INTS9Q9NV88 658 aaKnown RBP10.47□□□□□ -0.73
CCDC40-212ENST00000574799 FBXL5Q9UKA1 691 aa10.47□□□□□ -0.73
CCDC40-212ENST00000574799 ARFGEF1Q9Y6D6 1849 aa10.47□□□□□ -0.73
CCDC40-212ENST00000574799 CCDC194A0A1B0GVG4 234 aa10.47□□□□□ -0.73
CCDC40-212ENST00000574799 USP17L12C9JPN9 530 aa10.47□□□□□ -0.73
CCDC40-212ENST00000574799 USP17L21D6R901 530 aa10.47□□□□□ -0.73
CCDC40-212ENST00000574799 PALMO75781 387 aa10.47□□□□□ -0.73
CCDC40-212ENST00000574799 USP17L8P0C7I0 530 aa10.47□□□□□ -0.73
CCDC40-212ENST00000574799 POLE2P56282 527 aa10.47□□□□□ -0.73
CCDC40-212ENST00000574799 RAPGEF1Q13905 1077 aa10.47□□□□□ -0.73
CCDC40-212ENST00000574799 HOOK3Q86VS8 718 aa10.47□□□□□ -0.73
CCDC40-212ENST00000574799 IQCKQ8N0W5 287 aa10.47□□□□□ -0.73
CCDC40-212ENST00000574799 CDK5RAP3Q96JB5 506 aa10.47□□□□□ -0.73
CCDC40-212ENST00000574799 PAIP2Q9BPZ3 127 aaKnown RBP10.47□□□□□ -0.73
CCDC40-212ENST00000574799 FAM170AA1A519 330 aa10.46□□□□□ -0.73
CCDC40-212ENST00000574799 ADCY2Q08462 1091 aa10.46□□□□□ -0.73
CCDC40-212ENST00000574799 ITGB3BPQ13352 177 aaPredicted RBP10.46□□□□□ -0.73
CCDC40-212ENST00000574799 KIAA0753Q2KHM9 967 aa10.46□□□□□ -0.73
CCDC40-212ENST00000574799 SLC9C1Q4G0N8 1177 aa10.46□□□□□ -0.73
CCDC40-212ENST00000574799 CAVIN4Q5BKX8 364 aa10.46□□□□□ -0.73
CCDC40-212ENST00000574799 BZW1Q7L1Q6 419 aaKnown RBP10.46□□□□□ -0.73
CCDC40-212ENST00000574799 KIF2BQ8N4N8 673 aa10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms