RNA–Protein interactions for RNA: ENST00000573936.5

CHD3-216, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 749 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-216ENST00000573936 CDX2Q99626 313 aaPredicted RBP12.5□□□□□ -0.41
CHD3-216ENST00000573936 GPR20Q99678 358 aa12.5□□□□□ -0.41
CHD3-216ENST00000573936 JPH1Q9HDC5 661 aaPredicted RBP12.5□□□□□ -0.41
CHD3-216ENST00000573936 SLC9A2Q9UBY0 812 aa12.5□□□□□ -0.41
CHD3-216ENST00000573936 DCDC2CA8MYV0 355 aa12.49□□□□□ -0.41
CHD3-216ENST00000573936 H3BQV1 296 aa12.49□□□□□ -0.41
CHD3-216ENST00000573936 IPO5O00410 1097 aaKnown RBP12.49□□□□□ -0.41
CHD3-216ENST00000573936 TLR3O15455 904 aaKnown RBP12.49□□□□□ -0.41
CHD3-216ENST00000573936 EDIL3O43854 480 aa12.49□□□□□ -0.41
CHD3-216ENST00000573936 CCNT1O60563 726 aaKnown RBP12.49□□□□□ -0.41
CHD3-216ENST00000573936 PDCP20941 246 aa12.49□□□□□ -0.41
CHD3-216ENST00000573936 CDK7P50613 346 aa12.49□□□□□ -0.41
CHD3-216ENST00000573936 PTPN11Q06124 597 aaPredicted RBP12.49□□□□□ -0.41
CHD3-216ENST00000573936 SHHQ15465 462 aa12.49□□□□□ -0.41
CHD3-216ENST00000573936 LARP1BQ659C4 914 aaKnown RBP12.49□□□□□ -0.41
CHD3-216ENST00000573936 ANKRD33Q7Z3H0 272 aa12.49□□□□□ -0.41
CHD3-216ENST00000573936 SLC43A3Q8NBI5 491 aa12.49□□□□□ -0.41
CHD3-216ENST00000573936 TOX2Q96NM4 488 aa12.49□□□□□ -0.41
CHD3-216ENST00000573936 SEMA6BQ9H3T3 888 aa12.49□□□□□ -0.41
CHD3-216ENST00000573936 PDLIM7Q9NR12 457 aa12.49□□□□□ -0.41
CHD3-216ENST00000573936 PKD2L1Q9P0L9 805 aa12.49□□□□□ -0.41
CHD3-216ENST00000573936 DDX25Q9UHL0 483 aaKnown RBP12.49□□□□□ -0.41
CHD3-216ENST00000573936 SPTBN5Q9NRC6 3674 aaKnown RBP12.49□□□□□ -0.41
CHD3-216ENST00000573936 BAG4O95429 457 aaKnown RBP12.48□□□□□ -0.41
CHD3-216ENST00000573936 PSEN2P49810 448 aa12.48□□□□□ -0.41
CHD3-216ENST00000573936 KRT76Q01546 638 aa12.48□□□□□ -0.41
CHD3-216ENST00000573936 ITGB3BPQ13352 177 aaPredicted RBP12.48□□□□□ -0.41
CHD3-216ENST00000573936 NFRKBQ6P4R8 1299 aa12.48□□□□□ -0.41
CHD3-216ENST00000573936 TNPO1Q92973 898 aaKnown RBP12.48□□□□□ -0.41
CHD3-216ENST00000573936 LENG9Q96B70 501 aa12.48□□□□□ -0.41
CHD3-216ENST00000573936 FAM20AQ96MK3 541 aa12.48□□□□□ -0.41
CHD3-216ENST00000573936 RIT2Q99578 217 aa12.48□□□□□ -0.41
CHD3-216ENST00000573936 TEKT3Q9BXF9 490 aa12.48□□□□□ -0.41
CHD3-216ENST00000573936 BCAS3Q9H6U6 928 aa12.48□□□□□ -0.41
CHD3-216ENST00000573936 ZNF215Q9UL58 517 aaPredicted RBP12.48□□□□□ -0.41
CHD3-216ENST00000573936 NOL7Q9UMY1 257 aaKnown RBP12.48□□□□□ -0.41
CHD3-216ENST00000573936 RBM19Q9Y4C8 960 aaKnown RBP12.48□□□□□ -0.41
CHD3-216ENST00000573936 H3BRB1 525 aa12.47□□□□□ -0.41
CHD3-216ENST00000573936 TBX3O15119 743 aa12.47□□□□□ -0.41
CHD3-216ENST00000573936 MSH4O15457 936 aa12.47□□□□□ -0.41
CHD3-216ENST00000573936 MARCH6O60337 910 aa12.47□□□□□ -0.41
CHD3-216ENST00000573936 ATG7O95352 703 aa12.47□□□□□ -0.41
CHD3-216ENST00000573936 TDP2O95551 362 aa12.47□□□□□ -0.41
CHD3-216ENST00000573936 F2P00734 622 aa12.47□□□□□ -0.41
CHD3-216ENST00000573936 LGALS2P05162 132 aa12.47□□□□□ -0.41
CHD3-216ENST00000573936 HSP90AA1P07900 732 aaKnown RBP12.47□□□□□ -0.41
CHD3-216ENST00000573936 SUPT20HL2P0C7V6 817 aa12.47□□□□□ -0.41
CHD3-216ENST00000573936 FOSL2P15408 326 aa12.47□□□□□ -0.41
CHD3-216ENST00000573936 U2AF2P26368 475 aaKnown RBP eCLIP12.47□□□□□ -0.41
CHD3-216ENST00000573936 TCF7P36402 384 aaPredicted RBP12.47□□□□□ -0.41
CHD3-216ENST00000573936 TRAPPC10P48553 1259 aa12.47□□□□□ -0.41
CHD3-216ENST00000573936 PSMC6P62333 389 aa12.47□□□□□ -0.41
CHD3-216ENST00000573936 SP4Q02446 784 aa12.47□□□□□ -0.41
CHD3-216ENST00000573936 TLE2Q04725 743 aa12.47□□□□□ -0.41
CHD3-216ENST00000573936 MFSD10Q14728 455 aa12.47□□□□□ -0.41
CHD3-216ENST00000573936 NBPF20Q3BBV1 942 aa12.47□□□□□ -0.41
CHD3-216ENST00000573936 EARS2Q5JPH6 523 aaKnown RBP12.47□□□□□ -0.41
CHD3-216ENST00000573936 UTP14CQ5TAP6 766 aaKnown RBP12.47□□□□□ -0.41
CHD3-216ENST00000573936 ZNF746Q6NUN9 644 aaPredicted RBP12.47□□□□□ -0.41
CHD3-216ENST00000573936 SH3RF1Q7Z6J0 888 aa12.47□□□□□ -0.41
CHD3-216ENST00000573936 NOSTRINQ8IVI9 506 aa12.47□□□□□ -0.41
CHD3-216ENST00000573936 SMAP1Q8IYB5 467 aaPredicted RBP12.47□□□□□ -0.41
CHD3-216ENST00000573936 KAT2BQ92831 832 aa12.47□□□□□ -0.41
CHD3-216ENST00000573936 SLC5A5Q92911 643 aa12.47□□□□□ -0.41
CHD3-216ENST00000573936 BADQ92934 168 aa12.47□□□□□ -0.41
CHD3-216ENST00000573936 C16orf70Q9BSU1 422 aa12.47□□□□□ -0.41
CHD3-216ENST00000573936 SMARCAD1Q9H4L7 1026 aa12.47□□□□□ -0.41
CHD3-216ENST00000573936 TUT1Q9H6E5 874 aaKnown RBP12.47□□□□□ -0.41
CHD3-216ENST00000573936 AZI2Q9H6S1 392 aa12.47□□□□□ -0.41
CHD3-216ENST00000573936 GRIN2DO15399 1336 aa12.46□□□□□ -0.41
CHD3-216ENST00000573936 GSTTP1A0A1W2PQM5 241 aa12.46□□□□□ -0.41
CHD3-216ENST00000573936 TRIM43BA6NCK2 446 aa12.46□□□□□ -0.41
CHD3-216ENST00000573936 DDX39AO00148 427 aaKnown RBP12.46□□□□□ -0.41
CHD3-216ENST00000573936 HAS3O00219 553 aa12.46□□□□□ -0.41
CHD3-216ENST00000573936 DHX15O43143 795 aaKnown RBP12.46□□□□□ -0.41
CHD3-216ENST00000573936 PQBP1O60828 265 aaKnown RBP12.46□□□□□ -0.41
CHD3-216ENST00000573936 GAS7O60861 476 aa12.46□□□□□ -0.41
CHD3-216ENST00000573936 CLTBP09497 229 aa12.46□□□□□ -0.41
CHD3-216ENST00000573936 ZNF286BP0CG31 522 aa12.46□□□□□ -0.41
CHD3-216ENST00000573936 PDIA4P13667 645 aaKnown RBP12.46□□□□□ -0.41
CHD3-216ENST00000573936 ACTR2P61160 394 aa12.46□□□□□ -0.41
CHD3-216ENST00000573936 SMAD3P84022 425 aaKnown RBP12.46□□□□□ -0.41
CHD3-216ENST00000573936 ORC2Q13416 577 aaPredicted RBP12.46□□□□□ -0.41
CHD3-216ENST00000573936 KIAA0753Q2KHM9 967 aa12.46□□□□□ -0.41
CHD3-216ENST00000573936 C9orf50Q5SZB4 431 aa12.46□□□□□ -0.41
CHD3-216ENST00000573936 LRCH2Q5VUJ6 765 aa12.46□□□□□ -0.41
CHD3-216ENST00000573936 MCTP1Q6DN14 999 aa12.46□□□□□ -0.41
CHD3-216ENST00000573936 MIS18BP1Q6P0N0 1132 aa12.46□□□□□ -0.41
CHD3-216ENST00000573936 SESTD1Q86VW0 696 aa12.46□□□□□ -0.41
CHD3-216ENST00000573936 SLFN12Q8IYM2 578 aa12.46□□□□□ -0.41
CHD3-216ENST00000573936 C7orf31Q8N865 590 aa12.46□□□□□ -0.41
CHD3-216ENST00000573936 MYLIPQ8WY64 445 aa12.46□□□□□ -0.41
CHD3-216ENST00000573936 TRIM43Q96BQ3 446 aaPredicted RBP12.46□□□□□ -0.41
CHD3-216ENST00000573936 PRDM6Q9NQX0 595 aa12.46□□□□□ -0.41
CHD3-216ENST00000573936 ERAP1Q9NZ08 941 aa12.46□□□□□ -0.41
CHD3-216ENST00000573936 CHD9Q3L8U1 2897 aa12.46□□□□□ -0.42
CHD3-216ENST00000573936 MYH7BA7E2Y1 1941 aa12.45□□□□□ -0.42
CHD3-216ENST00000573936 EMSYQ7Z589 1322 aa12.45□□□□□ -0.42
CHD3-216ENST00000573936 FAM205CA6NFA0 338 aa12.45□□□□□ -0.42
CHD3-216ENST00000573936 SLC37A4O43826 429 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms