RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 PSTPIP2Q9H939 334 aa18.78■□□□□ 0.6
VPS53-215ENST00000573028 TSKSQ9UJT2 592 aa18.78■□□□□ 0.6
VPS53-215ENST00000573028 A0A087WUV0 522 aaPredicted RBP18.78■□□□□ 0.6
VPS53-215ENST00000573028 ZNF233A6NK53 670 aa18.78■□□□□ 0.6
VPS53-215ENST00000573028 RAD51CO43502 376 aa18.78■□□□□ 0.6
VPS53-215ENST00000573028 KCNH2Q12809 1159 aa18.78■□□□□ 0.6
VPS53-215ENST00000573028 ZCWPW2Q504Y3 356 aa18.78■□□□□ 0.6
VPS53-215ENST00000573028 CUL5Q93034 780 aa18.78■□□□□ 0.6
VPS53-215ENST00000573028 RNPC3Q96LT9 517 aaKnown RBP18.78■□□□□ 0.6
VPS53-215ENST00000573028 ABCB11O95342 1321 aa18.78■□□□□ 0.6
VPS53-215ENST00000573028 CNTNAP4Q9C0A0 1308 aa18.78■□□□□ 0.6
VPS53-215ENST00000573028 POTEFA5A3E0 1075 aa18.78■□□□□ 0.6
VPS53-215ENST00000573028 POTEIP0CG38 1075 aa18.78■□□□□ 0.6
VPS53-215ENST00000573028 PLCG2P16885 1265 aa18.78■□□□□ 0.6
VPS53-215ENST00000573028 SLC9A1P19634 815 aa18.78■□□□□ 0.6
VPS53-215ENST00000573028 NR2F2P24468 414 aa18.78■□□□□ 0.6
VPS53-215ENST00000573028 GTF2IP78347 998 aa18.78■□□□□ 0.6
VPS53-215ENST00000573028 POTEGQ6S5H5 508 aa18.78■□□□□ 0.6
VPS53-215ENST00000573028 POTEEQ6S8J3 1075 aa18.78■□□□□ 0.6
VPS53-215ENST00000573028 DDX42Q86XP3 938 aaKnown RBP eCLIP18.78■□□□□ 0.6
VPS53-215ENST00000573028 CAVIN3Q969G5 261 aa18.78■□□□□ 0.6
VPS53-215ENST00000573028 RREB1Q92766 1687 aa18.77■□□□□ 0.6
VPS53-215ENST00000573028 ASPRV1Q53RT3 343 aa18.77■□□□□ 0.6
VPS53-215ENST00000573028 CEP85LQ5SZL2 805 aa18.77■□□□□ 0.6
VPS53-215ENST00000573028 SCFD1Q8WVM8 642 aa18.77■□□□□ 0.6
VPS53-215ENST00000573028 BCCIPQ9P287 314 aaKnown RBP eCLIP18.77■□□□□ 0.6
VPS53-215ENST00000573028 GRID2IPA4D2P6 1211 aa18.77■□□□□ 0.59
VPS53-215ENST00000573028 TULP1O00294 542 aaPredicted RBP18.77■□□□□ 0.59
VPS53-215ENST00000573028 MRPL12P52815 198 aaKnown RBP18.77■□□□□ 0.59
VPS53-215ENST00000573028 RPS6KA1Q15418 735 aa18.77■□□□□ 0.59
VPS53-215ENST00000573028 GGA1Q9UJY5 639 aa18.77■□□□□ 0.59
VPS53-215ENST00000573028 NT5C2P49902 561 aa18.76■□□□□ 0.59
VPS53-215ENST00000573028 PTK2Q05397 1052 aa18.76■□□□□ 0.59
VPS53-215ENST00000573028 TRIM59Q8IWR1 403 aa18.76■□□□□ 0.59
VPS53-215ENST00000573028 OR2W6PQ8NHA6 318 aa18.76■□□□□ 0.59
VPS53-215ENST00000573028 EDEM3Q9BZQ6 932 aa18.76■□□□□ 0.59
VPS53-215ENST00000573028 PNMA6FA0A0J9YX94 578 aa18.76■□□□□ 0.59
VPS53-215ENST00000573028 CETN3O15182 167 aa18.76■□□□□ 0.59
VPS53-215ENST00000573028 SEC24CP53992 1094 aa18.76■□□□□ 0.59
VPS53-215ENST00000573028 PABPC4Q13310 644 aaKnown RBP eCLIP18.76■□□□□ 0.59
VPS53-215ENST00000573028 ORC2Q13416 577 aaPredicted RBP18.76■□□□□ 0.59
VPS53-215ENST00000573028 GLE1Q53GS7 698 aaKnown RBP18.76■□□□□ 0.59
VPS53-215ENST00000573028 FBXW10Q5XX13 1052 aa18.76■□□□□ 0.59
VPS53-215ENST00000573028 NUCKS1Q9H1E3 243 aaKnown RBP18.76■□□□□ 0.59
VPS53-215ENST00000573028 EFCC1Q9HA90 598 aa18.76■□□□□ 0.59
VPS53-215ENST00000573028 INPP5BP32019 993 aa18.76■□□□□ 0.59
VPS53-215ENST00000573028 CASP5P51878 434 aa18.76■□□□□ 0.59
VPS53-215ENST00000573028 MEI1Q5TIA1 1274 aa18.76■□□□□ 0.59
VPS53-215ENST00000573028 GDF3Q9NR23 364 aa18.76■□□□□ 0.59
VPS53-215ENST00000573028 GTF2A1P52655 376 aaPredicted RBP18.75■□□□□ 0.59
VPS53-215ENST00000573028 SNAP25P60880 206 aa18.75■□□□□ 0.59
VPS53-215ENST00000573028 TNNC1P63316 161 aa18.75■□□□□ 0.59
VPS53-215ENST00000573028 PLAAQ9Y263 795 aa18.75■□□□□ 0.59
VPS53-215ENST00000573028 SMARCA1P28370 1054 aa18.75■□□□□ 0.59
VPS53-215ENST00000573028 ZNF543Q08ER8 600 aa18.75■□□□□ 0.59
VPS53-215ENST00000573028 IQCKQ8N0W5 287 aa18.75■□□□□ 0.59
VPS53-215ENST00000573028 HDAC9Q9UKV0 1011 aa18.75■□□□□ 0.59
VPS53-215ENST00000573028 DAGLAQ9Y4D2 1042 aa18.75■□□□□ 0.59
VPS53-215ENST00000573028 NR1D1P20393 614 aa18.74■□□□□ 0.59
VPS53-215ENST00000573028 SCNN1DP51172 638 aa18.74■□□□□ 0.59
VPS53-215ENST00000573028 RUBCNQ92622 972 aa18.74■□□□□ 0.59
VPS53-215ENST00000573028 INPP4AQ96PE3 977 aaPredicted RBP18.74■□□□□ 0.59
VPS53-215ENST00000573028 NT5C3AQ9H0P0 336 aa18.74■□□□□ 0.59
VPS53-215ENST00000573028 COL16A1Q07092 1604 aaPredicted RBP18.74■□□□□ 0.59
VPS53-215ENST00000573028 FAM196BA6NMK8 535 aa18.74■□□□□ 0.59
VPS53-215ENST00000573028 H0YHG0 523 aa18.74■□□□□ 0.59
VPS53-215ENST00000573028 RBAK-RBAKDNI3L0D1 243 aa18.74■□□□□ 0.59
VPS53-215ENST00000573028 CYP11B2P19099 503 aa18.74■□□□□ 0.59
VPS53-215ENST00000573028 PPP4R3AQ6IN85 833 aa18.74■□□□□ 0.59
VPS53-215ENST00000573028 CEP63Q96MT8 703 aa18.74■□□□□ 0.59
VPS53-215ENST00000573028 MXD3Q9BW11 206 aa18.74■□□□□ 0.59
VPS53-215ENST00000573028 DDX47Q9H0S4 455 aaKnown RBP18.74■□□□□ 0.59
VPS53-215ENST00000573028 RNF14Q9UBS8 474 aa18.74■□□□□ 0.59
VPS53-215ENST00000573028 MED24O75448 989 aa18.74■□□□□ 0.59
VPS53-215ENST00000573028 KIAA0754O94854 1291 aa18.74■□□□□ 0.59
VPS53-215ENST00000573028 TTLL1O95922 423 aa18.74■□□□□ 0.59
VPS53-215ENST00000573028 CYP4A11Q02928 519 aa18.74■□□□□ 0.59
VPS53-215ENST00000573028 ICE2Q659A1 982 aa18.74■□□□□ 0.59
VPS53-215ENST00000573028 ZNF571Q7Z3V5 609 aaPredicted RBP18.74■□□□□ 0.59
VPS53-215ENST00000573028 USP38Q8NB14 1042 aa18.74■□□□□ 0.59
VPS53-215ENST00000573028 BCAS3Q9H6U6 928 aa18.74■□□□□ 0.59
VPS53-215ENST00000573028 ARMCX3Q9UH62 379 aaPredicted RBP18.74■□□□□ 0.59
VPS53-215ENST00000573028 EPB41P11171 864 aaKnown RBP18.73■□□□□ 0.59
VPS53-215ENST00000573028 PSMC6P62333 389 aa18.73■□□□□ 0.59
VPS53-215ENST00000573028 CDC37Q16543 378 aaPredicted RBP18.73■□□□□ 0.59
VPS53-215ENST00000573028 TRAPPC3LQ5T215 181 aa18.73■□□□□ 0.59
VPS53-215ENST00000573028 RNF187Q5TA31 235 aaPredicted RBP18.73■□□□□ 0.59
VPS53-215ENST00000573028 KAT2BQ92831 832 aa18.73■□□□□ 0.59
VPS53-215ENST00000573028 PPANQ9NQ55 473 aaKnown RBP18.73■□□□□ 0.59
VPS53-215ENST00000573028 DDX4Q9NQI0 724 aaKnown RBP18.73■□□□□ 0.59
VPS53-215ENST00000573028 PCDHGC5Q9Y5F6 944 aa18.73■□□□□ 0.59
VPS53-215ENST00000573028 GOLGA6L10A6NI86 522 aa18.73■□□□□ 0.59
VPS53-215ENST00000573028 hCG_1984214I3L0E3 225 aa18.73■□□□□ 0.59
VPS53-215ENST00000573028 GNA14O95837 355 aa18.73■□□□□ 0.59
VPS53-215ENST00000573028 LSP1P33241 339 aa18.73■□□□□ 0.59
VPS53-215ENST00000573028 PRR16Q569H4 304 aa18.73■□□□□ 0.59
VPS53-215ENST00000573028 GJB7Q6PEY0 223 aa18.73■□□□□ 0.59
VPS53-215ENST00000573028 ZNF713Q8N859 430 aaPredicted RBP18.73■□□□□ 0.59
VPS53-215ENST00000573028 CLIC2O15247 247 aa18.72■□□□□ 0.59
VPS53-215ENST00000573028 SLF2Q8IX21 1173 aa18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms