RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 PSRC1Q6PGN9 363 aaPredicted RBP9.28□□□□□ -0.92
VPS53-214ENST00000572607 CPLX2Q6PUV4 134 aaKnown RBP9.28□□□□□ -0.92
VPS53-214ENST00000572607 FBXL16Q8N461 479 aa9.28□□□□□ -0.92
VPS53-214ENST00000572607 USP38Q8NB14 1042 aa9.28□□□□□ -0.92
VPS53-214ENST00000572607 GIMAP8Q8ND71 665 aaPredicted RBP9.28□□□□□ -0.92
VPS53-214ENST00000572607 IL31RAQ8NI17 732 aa9.28□□□□□ -0.92
VPS53-214ENST00000572607 PPTC7Q8NI37 304 aa9.28□□□□□ -0.92
VPS53-214ENST00000572607 MYLIPQ8WY64 445 aa9.28□□□□□ -0.92
VPS53-214ENST00000572607 SPATA33Q96N06 139 aa9.28□□□□□ -0.92
VPS53-214ENST00000572607 TM6SF1Q9BZW5 370 aa9.28□□□□□ -0.92
VPS53-214ENST00000572607 ALDH8A1Q9H2A2 487 aaPredicted RBP9.28□□□□□ -0.92
VPS53-214ENST00000572607 HIPK3Q9H422 1215 aa9.28□□□□□ -0.92
VPS53-214ENST00000572607 RTEL1Q9NZ71 1219 aa9.28□□□□□ -0.92
VPS53-214ENST00000572607 GBF1Q92538 1859 aa9.28□□□□□ -0.92
VPS53-214ENST00000572607 SMCO2A6NFE2 343 aa9.27□□□□□ -0.93
VPS53-214ENST00000572607 C3orf80F5H4A9 247 aa9.27□□□□□ -0.93
VPS53-214ENST00000572607 CPLX1O14810 134 aa9.27□□□□□ -0.93
VPS53-214ENST00000572607 SORBS3O60504 671 aa9.27□□□□□ -0.93
VPS53-214ENST00000572607 B4GALT4O60513 344 aa9.27□□□□□ -0.93
VPS53-214ENST00000572607 FOSP01100 380 aaPredicted RBP9.27□□□□□ -0.93
VPS53-214ENST00000572607 SCG2P13521 617 aa9.27□□□□□ -0.93
VPS53-214ENST00000572607 CDC27P30260 824 aa9.27□□□□□ -0.93
VPS53-214ENST00000572607 ICAM3P32942 547 aa9.27□□□□□ -0.93
VPS53-214ENST00000572607 ADD1P35611 737 aaKnown RBP9.27□□□□□ -0.93
VPS53-214ENST00000572607 EPHB4P54760 987 aa9.27□□□□□ -0.93
VPS53-214ENST00000572607 UBE2SQ16763 222 aa9.27□□□□□ -0.93
VPS53-214ENST00000572607 NBPF20Q3BBV1 942 aa9.27□□□□□ -0.93
VPS53-214ENST00000572607 CELF3Q5SZQ8 465 aaKnown RBP9.27□□□□□ -0.93
VPS53-214ENST00000572607 ZNF697Q5TEC3 545 aa9.27□□□□□ -0.93
VPS53-214ENST00000572607 MYSM1Q5VVJ2 828 aa9.27□□□□□ -0.93
VPS53-214ENST00000572607 TRIM22Q8IYM9 498 aa9.27□□□□□ -0.93
VPS53-214ENST00000572607 CCDC155Q8N6L0 562 aa9.27□□□□□ -0.93
VPS53-214ENST00000572607 C7orf31Q8N865 590 aa9.27□□□□□ -0.93
VPS53-214ENST00000572607 CCDC148Q8NFR7 591 aa9.27□□□□□ -0.93
VPS53-214ENST00000572607 MAFAQ8NHW3 353 aaPredicted RBP9.27□□□□□ -0.93
VPS53-214ENST00000572607 RNPC3Q96LT9 517 aaKnown RBP9.27□□□□□ -0.93
VPS53-214ENST00000572607 INPP4AQ96PE3 977 aaPredicted RBP9.27□□□□□ -0.93
VPS53-214ENST00000572607 AGXT2Q9BYV1 514 aa9.27□□□□□ -0.93
VPS53-214ENST00000572607 TRPV6Q9H1D0 765 aa9.27□□□□□ -0.93
VPS53-214ENST00000572607 MTIF3Q9H2K0 278 aaKnown RBP9.27□□□□□ -0.93
VPS53-214ENST00000572607 RIC8AQ9NPQ8 531 aa9.27□□□□□ -0.93
VPS53-214ENST00000572607 PDRG1Q9NUG6 133 aa9.27□□□□□ -0.93
VPS53-214ENST00000572607 TRMT13Q9NUP7 481 aaKnown RBP9.27□□□□□ -0.93
VPS53-214ENST00000572607 BARHL2Q9NY43 387 aa9.27□□□□□ -0.93
VPS53-214ENST00000572607 PCDHA6Q9UN73 950 aa9.27□□□□□ -0.93
VPS53-214ENST00000572607 PCDHA8Q9Y5H6 950 aa9.27□□□□□ -0.93
VPS53-214ENST00000572607 GRIN2DO15399 1336 aa9.27□□□□□ -0.93
VPS53-214ENST00000572607 MYH6P13533 1939 aa9.27□□□□□ -0.93
VPS53-214ENST00000572607 NID2Q14112 1375 aa9.26□□□□□ -0.93
VPS53-214ENST00000572607 SPATA31C2B4DYI2 1134 aa9.26□□□□□ -0.93
VPS53-214ENST00000572607 STXBP3O00186 592 aa9.26□□□□□ -0.93
VPS53-214ENST00000572607 PPFIA4O75335 1185 aa9.26□□□□□ -0.93
VPS53-214ENST00000572607 GNA11P29992 359 aa9.26□□□□□ -0.93
VPS53-214ENST00000572607 CYP2C18P33260 490 aa9.26□□□□□ -0.93
VPS53-214ENST00000572607 ANAPC15P60006 121 aa9.26□□□□□ -0.93
VPS53-214ENST00000572607 CCT2P78371 535 aaKnown RBP9.26□□□□□ -0.93
VPS53-214ENST00000572607 MRPS9P82933 396 aaKnown RBP9.26□□□□□ -0.93
VPS53-214ENST00000572607 FUT2Q10981 343 aa9.26□□□□□ -0.93
VPS53-214ENST00000572607 AP3B2Q13367 1082 aa9.26□□□□□ -0.93
VPS53-214ENST00000572607 MTMR1Q13613 665 aa9.26□□□□□ -0.93
VPS53-214ENST00000572607 ANKRD1Q15327 319 aa9.26□□□□□ -0.93
VPS53-214ENST00000572607 PFKFB3Q16875 520 aaPredicted RBP9.26□□□□□ -0.93
VPS53-214ENST00000572607 MCTP2Q6DN12 878 aa9.26□□□□□ -0.93
VPS53-214ENST00000572607 METTL7BQ6UX53 244 aa9.26□□□□□ -0.93
VPS53-214ENST00000572607 RETREG2Q8NC44 543 aa9.26□□□□□ -0.93
VPS53-214ENST00000572607 GPRASP2Q96D09 838 aa9.26□□□□□ -0.93
VPS53-214ENST00000572607 SENP7Q9BQF6 1050 aa9.26□□□□□ -0.93
VPS53-214ENST00000572607 ALG1Q9BT22 464 aa9.26□□□□□ -0.93
VPS53-214ENST00000572607 SLC26A6Q9BXS9 759 aa9.26□□□□□ -0.93
VPS53-214ENST00000572607 RNF26Q9BY78 433 aaPredicted RBP9.26□□□□□ -0.93
VPS53-214ENST00000572607 UPF3BQ9BZI7 483 aaKnown RBP9.26□□□□□ -0.93
VPS53-214ENST00000572607 C6orf50Q9HD87 102 aa9.26□□□□□ -0.93
VPS53-214ENST00000572607 FAM217BQ9NTX9 383 aaPredicted RBP9.26□□□□□ -0.93
VPS53-214ENST00000572607 RAPGEFL1Q9UHV5 662 aa9.26□□□□□ -0.93
VPS53-214ENST00000572607 MYO9BQ13459 2157 aa9.26□□□□□ -0.93
VPS53-214ENST00000572607 MAFGO15525 162 aa9.25□□□□□ -0.93
VPS53-214ENST00000572607 PRPF3O43395 683 aaKnown RBP9.25□□□□□ -0.93
VPS53-214ENST00000572607 CDKL5O76039 1030 aa9.25□□□□□ -0.93
VPS53-214ENST00000572607 F2P00734 622 aa9.25□□□□□ -0.93
VPS53-214ENST00000572607 ZNF286BP0CG31 522 aa9.25□□□□□ -0.93
VPS53-214ENST00000572607 CYP2C9P11712 490 aa9.25□□□□□ -0.93
VPS53-214ENST00000572607 CSF2RAP15509 400 aa9.25□□□□□ -0.93
VPS53-214ENST00000572607 IFNAR1P17181 557 aa9.25□□□□□ -0.93
VPS53-214ENST00000572607 PDIA3P30101 505 aaKnown RBP9.25□□□□□ -0.93
VPS53-214ENST00000572607 ZNF76P36508 570 aa9.25□□□□□ -0.93
VPS53-214ENST00000572607 CCL23P55773 120 aa9.25□□□□□ -0.93
VPS53-214ENST00000572607 SMAD3P84022 425 aaKnown RBP9.25□□□□□ -0.93
VPS53-214ENST00000572607 SP2Q02086 613 aa9.25□□□□□ -0.93
VPS53-214ENST00000572607 SSRP1Q08945 709 aaKnown RBP9.25□□□□□ -0.93
VPS53-214ENST00000572607 BFSP2Q13515 415 aa9.25□□□□□ -0.93
VPS53-214ENST00000572607 PTGISQ16647 500 aa9.25□□□□□ -0.93
VPS53-214ENST00000572607 HSDL1Q3SXM5 330 aa9.25□□□□□ -0.93
VPS53-214ENST00000572607 Q6ZNB5 142 aa9.25□□□□□ -0.93
VPS53-214ENST00000572607 CYFIP1Q7L576 1253 aa9.25□□□□□ -0.93
VPS53-214ENST00000572607 SESTD1Q86VW0 696 aa9.25□□□□□ -0.93
VPS53-214ENST00000572607 RPUSD2Q8IZ73 545 aaKnown RBP9.25□□□□□ -0.93
VPS53-214ENST00000572607 BICD2Q8TD16 824 aa9.25□□□□□ -0.93
VPS53-214ENST00000572607 PHKBQ93100 1093 aa9.25□□□□□ -0.93
VPS53-214ENST00000572607 ZNF274Q96GC6 653 aaPredicted RBP9.25□□□□□ -0.93
VPS53-214ENST00000572607 NOC4LQ9BVI4 516 aaKnown RBP9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms