RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 CHRNA1P02708 482 aa7.75□□□□□ -1.17
VPS53-213ENST00000572334 ITGB5P18084 799 aa7.75□□□□□ -1.17
VPS53-213ENST00000572334 COL9A1P20849 921 aa7.75□□□□□ -1.17
VPS53-213ENST00000572334 LIFRP42702 1097 aa7.75□□□□□ -1.17
VPS53-213ENST00000572334 MGAT3Q09327 533 aa7.75□□□□□ -1.17
VPS53-213ENST00000572334 NEDD9Q14511 834 aa7.75□□□□□ -1.17
VPS53-213ENST00000572334 SKIV2LQ15477 1246 aaKnown RBP7.75□□□□□ -1.17
VPS53-213ENST00000572334 GNPTABQ3T906 1256 aa7.75□□□□□ -1.17
VPS53-213ENST00000572334 MARCH8Q5T0T0 291 aa7.75□□□□□ -1.17
VPS53-213ENST00000572334 TYW1BQ6NUM6 668 aa7.75□□□□□ -1.17
VPS53-213ENST00000572334 RUFY4Q6ZNE9 571 aa7.75□□□□□ -1.17
VPS53-213ENST00000572334 RAB11FIP4Q86YS3 637 aa7.75□□□□□ -1.17
VPS53-213ENST00000572334 LMBR1Q8WVP7 490 aa7.75□□□□□ -1.17
VPS53-213ENST00000572334 TOP1MTQ969P6 601 aa7.75□□□□□ -1.17
VPS53-213ENST00000572334 TGS1Q96RS0 853 aaKnown RBP7.75□□□□□ -1.17
VPS53-213ENST00000572334 PCYT2Q99447 389 aa7.75□□□□□ -1.17
VPS53-213ENST00000572334 ESYT1Q9BSJ8 1104 aa7.75□□□□□ -1.17
VPS53-213ENST00000572334 ZBED2Q9BTP6 218 aa7.75□□□□□ -1.17
VPS53-213ENST00000572334 LRRC2Q9BYS8 371 aa7.75□□□□□ -1.17
VPS53-213ENST00000572334 RC3H2Q9HBD1 1191 aaKnown RBP7.75□□□□□ -1.17
VPS53-213ENST00000572334 CD320Q9NPF0 282 aa7.75□□□□□ -1.17
VPS53-213ENST00000572334 COG5Q9UP83 839 aa7.75□□□□□ -1.17
VPS53-213ENST00000572334 UBIAD1Q9Y5Z9 338 aa7.75□□□□□ -1.17
VPS53-213ENST00000572334 EMSYQ7Z589 1322 aa7.75□□□□□ -1.17
VPS53-213ENST00000572334 TRIOO75962 3097 aa7.75□□□□□ -1.17
VPS53-213ENST00000572334 CAND2O75155 1236 aa7.74□□□□□ -1.17
VPS53-213ENST00000572334 CTSHP09668 335 aa7.74□□□□□ -1.17
VPS53-213ENST00000572334 FUT2Q10981 343 aa7.74□□□□□ -1.17
VPS53-213ENST00000572334 TRAF1Q13077 416 aa7.74□□□□□ -1.17
VPS53-213ENST00000572334 SART3Q15020 963 aaKnown RBP7.74□□□□□ -1.17
VPS53-213ENST00000572334 UBE2SQ16763 222 aa7.74□□□□□ -1.17
VPS53-213ENST00000572334 UTP14CQ5TAP6 766 aaKnown RBP7.74□□□□□ -1.17
VPS53-213ENST00000572334 CREB3L3Q68CJ9 461 aa7.74□□□□□ -1.17
VPS53-213ENST00000572334 XRRA1Q6P2D8 792 aa7.74□□□□□ -1.17
VPS53-213ENST00000572334 TMTC3Q6ZXV5 915 aa7.74□□□□□ -1.17
VPS53-213ENST00000572334 RPAINQ86UA6 219 aa7.74□□□□□ -1.17
VPS53-213ENST00000572334 MYOCDQ8IZQ8 938 aa7.74□□□□□ -1.17
VPS53-213ENST00000572334 CTCFLQ8NI51 663 aaPredicted RBP7.74□□□□□ -1.17
VPS53-213ENST00000572334 SMARCC2Q8TAQ2 1214 aa7.74□□□□□ -1.17
VPS53-213ENST00000572334 HLA-CQ95604 372 aa7.74□□□□□ -1.17
VPS53-213ENST00000572334 ZBTB10Q96DT7 871 aa7.74□□□□□ -1.17
VPS53-213ENST00000572334 RRP36Q96EU6 259 aaKnown RBP7.74□□□□□ -1.17
VPS53-213ENST00000572334 TMEM87BQ96K49 555 aa7.74□□□□□ -1.17
VPS53-213ENST00000572334 TSPYL2Q9H2G4 693 aaPredicted RBP7.74□□□□□ -1.17
VPS53-213ENST00000572334 EPHX3Q9H6B9 360 aa7.74□□□□□ -1.17
VPS53-213ENST00000572334 EHMT1Q9H9B1 1298 aa7.74□□□□□ -1.17
VPS53-213ENST00000572334 C11orf16Q9NQ32 467 aa7.74□□□□□ -1.17
VPS53-213ENST00000572334 INSL6Q9Y581 213 aa7.74□□□□□ -1.17
VPS53-213ENST00000572334 MUC6Q6W4X9 2439 aa7.74□□□□□ -1.17
VPS53-213ENST00000572334 CNTNAP5Q8WYK1 1306 aa7.74□□□□□ -1.17
VPS53-213ENST00000572334 ZNF318Q5VUA4 2279 aa7.73□□□□□ -1.17
VPS53-213ENST00000572334 MBLAC1A4D2B0 266 aaPredicted RBP7.73□□□□□ -1.17
VPS53-213ENST00000572334 NOP56O00567 594 aaKnown RBP7.73□□□□□ -1.17
VPS53-213ENST00000572334 KIF5BP33176 963 aa7.73□□□□□ -1.17
VPS53-213ENST00000572334 MCM5P33992 734 aa7.73□□□□□ -1.17
VPS53-213ENST00000572334 TCF7P36402 384 aaPredicted RBP7.73□□□□□ -1.17
VPS53-213ENST00000572334 ARHGAP4P98171 946 aa7.73□□□□□ -1.17
VPS53-213ENST00000572334 SP4Q02446 784 aa7.73□□□□□ -1.17
VPS53-213ENST00000572334 COL19A1Q14993 1142 aa7.73□□□□□ -1.17
VPS53-213ENST00000572334 AAK1Q2M2I8 961 aa7.73□□□□□ -1.17
VPS53-213ENST00000572334 GLIPR1L2Q4G1C9 344 aa7.73□□□□□ -1.17
VPS53-213ENST00000572334 EPC2Q52LR7 807 aa7.73□□□□□ -1.17
VPS53-213ENST00000572334 CASC1Q6TDU7 716 aa7.73□□□□□ -1.17
VPS53-213ENST00000572334 SGMS1Q86VZ5 419 aa7.73□□□□□ -1.17
VPS53-213ENST00000572334 CRIPAKQ8N1N5 446 aa7.73□□□□□ -1.17
VPS53-213ENST00000572334 GADD45GIP1Q8TAE8 222 aaPredicted RBP7.73□□□□□ -1.17
VPS53-213ENST00000572334 CYP2W1Q8TAV3 490 aa7.73□□□□□ -1.17
VPS53-213ENST00000572334 UBE2Q2Q8WVN8 375 aa7.73□□□□□ -1.17
VPS53-213ENST00000572334 LINC01599Q8WXQ3 324 aa7.73□□□□□ -1.17
VPS53-213ENST00000572334 SEPT8Q92599 483 aa7.73□□□□□ -1.17
VPS53-213ENST00000572334 GPRASP2Q96D09 838 aa7.73□□□□□ -1.17
VPS53-213ENST00000572334 LZTS2Q9BRK4 669 aa7.73□□□□□ -1.17
VPS53-213ENST00000572334 UBE2ZQ9H832 354 aaPredicted RBP7.73□□□□□ -1.17
VPS53-213ENST00000572334 PSTPIP2Q9H939 334 aa7.73□□□□□ -1.17
VPS53-213ENST00000572334 FAM217BQ9NTX9 383 aaPredicted RBP7.73□□□□□ -1.17
VPS53-213ENST00000572334 NRCAMQ92823 1304 aa7.73□□□□□ -1.17
VPS53-213ENST00000572334 H3BNC9 293 aa7.72□□□□□ -1.17
VPS53-213ENST00000572334 ADAMTS3O15072 1205 aa7.72□□□□□ -1.17
VPS53-213ENST00000572334 UPP2O95045 317 aa7.72□□□□□ -1.17
VPS53-213ENST00000572334 AMHP03971 560 aa7.72□□□□□ -1.17
VPS53-213ENST00000572334 GNAQP50148 359 aa7.72□□□□□ -1.17
VPS53-213ENST00000572334 EXOSC10Q01780 885 aaKnown RBP7.72□□□□□ -1.17
VPS53-213ENST00000572334 LPIN1Q14693 890 aa7.72□□□□□ -1.17
VPS53-213ENST00000572334 ADCK5Q3MIX3 580 aa7.72□□□□□ -1.17
VPS53-213ENST00000572334 LEXMQ3ZCV2 418 aa7.72□□□□□ -1.17
VPS53-213ENST00000572334 WWC2Q6AWC2 1192 aa7.72□□□□□ -1.17
VPS53-213ENST00000572334 RTN4RL1Q86UN2 441 aaPredicted RBP7.72□□□□□ -1.17
VPS53-213ENST00000572334 NLRX1Q86UT6 975 aa7.72□□□□□ -1.17
VPS53-213ENST00000572334 RASEFQ8IZ41 740 aa7.72□□□□□ -1.17
VPS53-213ENST00000572334 TMTC2Q8N394 836 aa7.72□□□□□ -1.17
VPS53-213ENST00000572334 CCDC82Q8N4S0 544 aa7.72□□□□□ -1.17
VPS53-213ENST00000572334 FANCBQ8NB91 859 aa7.72□□□□□ -1.17
VPS53-213ENST00000572334 FBXO22Q8NEZ5 403 aa7.72□□□□□ -1.17
VPS53-213ENST00000572334 SEPT1Q8WYJ6 367 aa7.72□□□□□ -1.17
VPS53-213ENST00000572334 ZNF689Q96CS4 500 aaPredicted RBP7.72□□□□□ -1.17
VPS53-213ENST00000572334 MRPL38Q96DV4 380 aaKnown RBP7.72□□□□□ -1.17
VPS53-213ENST00000572334 PGBD1Q96JS3 809 aa7.72□□□□□ -1.17
VPS53-213ENST00000572334 TCEANC2Q96MN5 208 aa7.72□□□□□ -1.17
VPS53-213ENST00000572334 IFIH1Q9BYX4 1025 aaKnown RBP7.72□□□□□ -1.17
VPS53-213ENST00000572334 AGO3Q9H9G7 860 aaKnown RBP7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms