RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 STAT2P52630 851 aa16.66■□□□□ 0.26
CIITA-204ENST00000570546 MRPS9P82933 396 aaKnown RBP16.66■□□□□ 0.26
CIITA-204ENST00000570546 FMR1Q06787 632 aaKnown RBP eCLIP16.66■□□□□ 0.26
CIITA-204ENST00000570546 TAB3Q8N5C8 712 aaPredicted RBP16.66■□□□□ 0.26
CIITA-204ENST00000570546 PROCA1Q8NCQ7 364 aaPredicted RBP16.66■□□□□ 0.26
CIITA-204ENST00000570546 SMC1BQ8NDV3 1235 aa16.66■□□□□ 0.26
CIITA-204ENST00000570546 DBNDD1Q9H9R9 158 aa16.66■□□□□ 0.26
CIITA-204ENST00000570546 POC1B-GALNT4F8VUJ3 575 aa16.66■□□□□ 0.26
CIITA-204ENST00000570546 TADA3O75528 432 aa16.66■□□□□ 0.26
CIITA-204ENST00000570546 CTDNEP1O95476 244 aa16.66■□□□□ 0.26
CIITA-204ENST00000570546 IGDCC4Q8TDY8 1250 aa16.66■□□□□ 0.26
CIITA-204ENST00000570546 VCX3BQ9H321 246 aa16.66■□□□□ 0.26
CIITA-204ENST00000570546 BARHL2Q9NY43 387 aa16.66■□□□□ 0.26
CIITA-204ENST00000570546 PLAAQ9Y263 795 aa16.66■□□□□ 0.26
CIITA-204ENST00000570546 TRIM28Q13263 835 aaKnown RBP16.65■□□□□ 0.26
CIITA-204ENST00000570546 CTTNQ14247 550 aaKnown RBP16.65■□□□□ 0.26
CIITA-204ENST00000570546 GEN1Q17RS7 908 aa16.65■□□□□ 0.26
CIITA-204ENST00000570546 ANKRD7Q92527 254 aa16.65■□□□□ 0.26
CIITA-204ENST00000570546 FMO2Q99518 471 aa16.65■□□□□ 0.26
CIITA-204ENST00000570546 UTYO14607 1347 aa16.65■□□□□ 0.26
CIITA-204ENST00000570546 POLR2BP30876 1174 aaKnown RBP16.65■□□□□ 0.26
CIITA-204ENST00000570546 BSPRYQ5W0U4 402 aa16.65■□□□□ 0.26
CIITA-204ENST00000570546 ARMC9Q7Z3E5 817 aa16.65■□□□□ 0.26
CIITA-204ENST00000570546 METTL13Q8N6R0 699 aa16.65■□□□□ 0.26
CIITA-204ENST00000570546 NEK9Q8TD19 979 aa16.65■□□□□ 0.26
CIITA-204ENST00000570546 KMT5AQ9NQR1 393 aa16.65■□□□□ 0.26
CIITA-204ENST00000570546 SEPT9Q9UHD8 586 aaPredicted RBP16.65■□□□□ 0.26
CIITA-204ENST00000570546 MUM1Q2TAK8 710 aa16.65■□□□□ 0.26
CIITA-204ENST00000570546 NLGN1Q8N2Q7 840 aa16.65■□□□□ 0.26
CIITA-204ENST00000570546 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.65■□□□□ 0.26
CIITA-204ENST00000570546 PI4KBQ9UBF8 816 aa16.65■□□□□ 0.26
CIITA-204ENST00000570546 ODF2LQ9ULJ1 636 aa16.65■□□□□ 0.26
CIITA-204ENST00000570546 ADGRB1O14514 1584 aa16.65■□□□□ 0.26
CIITA-204ENST00000570546 A0A1B0GTH6 734 aa16.65■□□□□ 0.26
CIITA-204ENST00000570546 CLRN2A0PK11 232 aa16.65■□□□□ 0.26
CIITA-204ENST00000570546 SNAP25P60880 206 aa16.65■□□□□ 0.26
CIITA-204ENST00000570546 COASYQ13057 564 aa16.65■□□□□ 0.26
CIITA-204ENST00000570546 FLAD1Q8NFF5 587 aa16.65■□□□□ 0.26
CIITA-204ENST00000570546 TBC1D31Q96DN5 1066 aa16.65■□□□□ 0.26
CIITA-204ENST00000570546 BHMT2Q9H2M3 363 aa16.65■□□□□ 0.26
CIITA-204ENST00000570546 TMEM260Q9NX78 707 aa16.65■□□□□ 0.26
CIITA-204ENST00000570546 ANAPC5Q9UJX4 755 aa16.65■□□□□ 0.26
CIITA-204ENST00000570546 A0A1W2PQC6 194 aa16.64■□□□□ 0.25
CIITA-204ENST00000570546 TMEM191BP0C7N4 346 aa16.64■□□□□ 0.25
CIITA-204ENST00000570546 HOXA13P31271 388 aaPredicted RBP16.64■□□□□ 0.25
CIITA-204ENST00000570546 ANTXR2P58335 489 aa16.64■□□□□ 0.25
CIITA-204ENST00000570546 SLMAPQ14BN4 828 aa16.64■□□□□ 0.25
CIITA-204ENST00000570546 PHLDB2Q86SQ0 1253 aa16.64■□□□□ 0.25
CIITA-204ENST00000570546 KSR1Q8IVT5 923 aa16.64■□□□□ 0.25
CIITA-204ENST00000570546 TUBE1Q9UJT0 475 aa16.64■□□□□ 0.25
CIITA-204ENST00000570546 FDPSP14324 419 aaKnown RBP16.64■□□□□ 0.25
CIITA-204ENST00000570546 SLCO1A2P46721 670 aa16.64■□□□□ 0.25
CIITA-204ENST00000570546 EIF3BP55884 814 aaKnown RBP16.64■□□□□ 0.25
CIITA-204ENST00000570546 SLC44A5Q8NCS7 719 aa16.64■□□□□ 0.25
CIITA-204ENST00000570546 ZCCHC17Q9NP64 241 aaKnown RBP16.64■□□□□ 0.25
CIITA-204ENST00000570546 MROH7-TTC4A0A0A0MT08 1334 aa16.64■□□□□ 0.25
CIITA-204ENST00000570546 NOL3O60936 208 aaKnown RBP16.64■□□□□ 0.25
CIITA-204ENST00000570546 USP14P54578 494 aa16.64■□□□□ 0.25
CIITA-204ENST00000570546 ATP6V0A1Q93050 837 aa16.64■□□□□ 0.25
CIITA-204ENST00000570546 OSBPL9Q96SU4 736 aa16.64■□□□□ 0.25
CIITA-204ENST00000570546 ZMYND12Q9H0C1 365 aa16.64■□□□□ 0.25
CIITA-204ENST00000570546 COL15A1P39059 1388 aa16.64■□□□□ 0.25
CIITA-204ENST00000570546 EIF3CLB5ME19 914 aaKnown RBP16.64■□□□□ 0.25
CIITA-204ENST00000570546 ORC4O43929 436 aa16.64■□□□□ 0.25
CIITA-204ENST00000570546 CRCPO75575 148 aa16.64■□□□□ 0.25
CIITA-204ENST00000570546 SARNPP82979 210 aaKnown RBP16.64■□□□□ 0.25
CIITA-204ENST00000570546 AFAP1L2Q8N4X5 818 aa16.64■□□□□ 0.25
CIITA-204ENST00000570546 EIF3CQ99613 913 aaKnown RBP16.64■□□□□ 0.25
CIITA-204ENST00000570546 LIMA1Q9UHB6 759 aaKnown RBP16.64■□□□□ 0.25
CIITA-204ENST00000570546 CCDC188H7C350 402 aa16.63■□□□□ 0.25
CIITA-204ENST00000570546 SGK1O00141 431 aa16.63■□□□□ 0.25
CIITA-204ENST00000570546 YARSP54577 528 aaKnown RBP16.63■□□□□ 0.25
CIITA-204ENST00000570546 TPD52P55327 224 aaPredicted RBP16.63■□□□□ 0.25
CIITA-204ENST00000570546 AP3B2Q13367 1082 aa16.63■□□□□ 0.25
CIITA-204ENST00000570546 ORC2Q13416 577 aaPredicted RBP16.63■□□□□ 0.25
CIITA-204ENST00000570546 NFRKBQ6P4R8 1299 aa16.63■□□□□ 0.25
CIITA-204ENST00000570546 CELF1Q92879 486 aaKnown RBP16.63■□□□□ 0.25
CIITA-204ENST00000570546 CNKSR1Q969H4 720 aa16.63■□□□□ 0.25
CIITA-204ENST00000570546 ZBTB5O15062 677 aa16.63■□□□□ 0.25
CIITA-204ENST00000570546 FGGP02679 453 aa16.63■□□□□ 0.25
CIITA-204ENST00000570546 RFX5P48382 616 aaPredicted RBP16.63■□□□□ 0.25
CIITA-204ENST00000570546 ATP1A1P05023 1023 aaKnown RBP16.63■□□□□ 0.25
CIITA-204ENST00000570546 TTBK2Q6IQ55 1244 aa16.63■□□□□ 0.25
CIITA-204ENST00000570546 PHF20Q9BVI0 1012 aa16.63■□□□□ 0.25
CIITA-204ENST00000570546 SUGCTQ9HAC7 445 aa16.63■□□□□ 0.25
CIITA-204ENST00000570546 NCK2O43639 380 aa16.63■□□□□ 0.25
CIITA-204ENST00000570546 MXI1P50539 228 aa16.63■□□□□ 0.25
CIITA-204ENST00000570546 LLGL1Q15334 1064 aa16.63■□□□□ 0.25
CIITA-204ENST00000570546 TRIM68Q6AZZ1 485 aa16.63■□□□□ 0.25
CIITA-204ENST00000570546 CAPN11Q9UMQ6 739 aa16.63■□□□□ 0.25
CIITA-204ENST00000570546 SFI1A8K8P3 1242 aa16.62■□□□□ 0.25
CIITA-204ENST00000570546 E9PMD0 336 aa16.62■□□□□ 0.25
CIITA-204ENST00000570546 ADCY1Q08828 1119 aa16.62■□□□□ 0.25
CIITA-204ENST00000570546 SRBD1Q8N5C6 995 aaKnown RBP16.62■□□□□ 0.25
CIITA-204ENST00000570546 GABPB2Q8TAK5 448 aaPredicted RBP16.62■□□□□ 0.25
CIITA-204ENST00000570546 HAUS1Q96CS2 278 aa16.62■□□□□ 0.25
CIITA-204ENST00000570546 NRBP2Q9NSY0 501 aa16.62■□□□□ 0.25
CIITA-204ENST00000570546 PCDHA6Q9UN73 950 aa16.62■□□□□ 0.25
CIITA-204ENST00000570546 PCDHA8Q9Y5H6 950 aa16.62■□□□□ 0.25
CIITA-204ENST00000570546 IVNS1ABPQ9Y6Y0 642 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms