RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 NR2E1Q9Y466 385 aa12.9□□□□□ -0.34
VPS53-207ENST00000570510 RALGAPA2Q2PPJ7 1873 aa12.9□□□□□ -0.34
VPS53-207ENST00000570510 PER2O15055 1255 aa12.89□□□□□ -0.35
VPS53-207ENST00000570510 DGKIO75912 1065 aa12.89□□□□□ -0.35
VPS53-207ENST00000570510 LGALS2P05162 132 aa12.89□□□□□ -0.35
VPS53-207ENST00000570510 MTMR3Q13615 1198 aa12.89□□□□□ -0.35
VPS53-207ENST00000570510 AAMPQ13685 434 aa12.89□□□□□ -0.35
VPS53-207ENST00000570510 CAMK1Q14012 370 aa12.89□□□□□ -0.35
VPS53-207ENST00000570510 PAN2Q504Q3 1202 aaKnown RBP12.89□□□□□ -0.35
VPS53-207ENST00000570510 ZMYM1Q5SVZ6 1142 aa12.89□□□□□ -0.35
VPS53-207ENST00000570510 UBALD2Q8IYN6 164 aa12.89□□□□□ -0.35
VPS53-207ENST00000570510 KREMEN2Q8NCW0 462 aa12.89□□□□□ -0.35
VPS53-207ENST00000570510 VAT1LQ9HCJ6 419 aa12.89□□□□□ -0.35
VPS53-207ENST00000570510 ANAPC4Q9UJX5 808 aa12.89□□□□□ -0.35
VPS53-207ENST00000570510 MRPL42Q9Y6G3 142 aaKnown RBP12.89□□□□□ -0.35
VPS53-207ENST00000570510 MYO15AQ9UKN7 3530 aa12.89□□□□□ -0.35
VPS53-207ENST00000570510 STAG3L1P0CL83 205 aa12.88□□□□□ -0.35
VPS53-207ENST00000570510 IBSPP21815 317 aaPredicted RBP12.88□□□□□ -0.35
VPS53-207ENST00000570510 DNAJB1P25685 340 aa12.88□□□□□ -0.35
VPS53-207ENST00000570510 DGLUCYQ7Z3D6 616 aa12.88□□□□□ -0.35
VPS53-207ENST00000570510 CMTR2Q8IYT2 770 aaKnown RBP12.88□□□□□ -0.35
VPS53-207ENST00000570510 ZNF689Q96CS4 500 aaPredicted RBP12.88□□□□□ -0.35
VPS53-207ENST00000570510 CPVLQ9H3G5 476 aa12.88□□□□□ -0.35
VPS53-207ENST00000570510 AAASQ9NRG9 546 aa12.88□□□□□ -0.35
VPS53-207ENST00000570510 LRFN2Q9ULH4 789 aa12.88□□□□□ -0.35
VPS53-207ENST00000570510 SORCS3Q9UPU3 1222 aa12.88□□□□□ -0.35
VPS53-207ENST00000570510 PCDHB12Q9Y5F1 795 aa12.88□□□□□ -0.35
VPS53-207ENST00000570510 KMT2EQ8IZD2 1858 aa12.88□□□□□ -0.35
VPS53-207ENST00000570510 RIF1Q5UIP0 2472 aaKnown RBP12.88□□□□□ -0.35
VPS53-207ENST00000570510 GLP2RO95838 553 aa12.87□□□□□ -0.35
VPS53-207ENST00000570510 LINC00271P0C7V0 271 aa12.87□□□□□ -0.35
VPS53-207ENST00000570510 UBA1P22314 1058 aaKnown RBP12.87□□□□□ -0.35
VPS53-207ENST00000570510 CCND2P30279 289 aa12.87□□□□□ -0.35
VPS53-207ENST00000570510 GNPTABQ3T906 1256 aa12.87□□□□□ -0.35
VPS53-207ENST00000570510 FAM26DQ5JW98 314 aa12.87□□□□□ -0.35
VPS53-207ENST00000570510 UTP14CQ5TAP6 766 aaKnown RBP12.87□□□□□ -0.35
VPS53-207ENST00000570510 ASTLQ6HA08 431 aaPredicted RBP12.87□□□□□ -0.35
VPS53-207ENST00000570510 TAF2Q6P1X5 1199 aa12.87□□□□□ -0.35
VPS53-207ENST00000570510 MFSD6Q6ZSS7 791 aa12.87□□□□□ -0.35
VPS53-207ENST00000570510 ADGRF4Q8IZF3 695 aa12.87□□□□□ -0.35
VPS53-207ENST00000570510 CDCA3Q99618 268 aaPredicted RBP12.87□□□□□ -0.35
VPS53-207ENST00000570510 PDCD2LQ9BRP1 358 aa12.87□□□□□ -0.35
VPS53-207ENST00000570510 CHRNA1P02708 482 aa12.86□□□□□ -0.35
VPS53-207ENST00000570510 SNHG28P0DPA3 235 aa12.86□□□□□ -0.35
VPS53-207ENST00000570510 HOXC8P31273 242 aa12.86□□□□□ -0.35
VPS53-207ENST00000570510 TECP42680 631 aa12.86□□□□□ -0.35
VPS53-207ENST00000570510 SP2Q02086 613 aa12.86□□□□□ -0.35
VPS53-207ENST00000570510 QRICH1Q2TAL8 776 aa12.86□□□□□ -0.35
VPS53-207ENST00000570510 TMEM105Q8N8V8 129 aa12.86□□□□□ -0.35
VPS53-207ENST00000570510 SUSD6Q92537 303 aa12.86□□□□□ -0.35
VPS53-207ENST00000570510 HINFPQ9BQA5 517 aa12.86□□□□□ -0.35
VPS53-207ENST00000570510 APOL5Q9BWW9 433 aa12.86□□□□□ -0.35
VPS53-207ENST00000570510 KAT14Q9H8E8 782 aa12.86□□□□□ -0.35
VPS53-207ENST00000570510 RC3H2Q9HBD1 1191 aaKnown RBP12.86□□□□□ -0.35
VPS53-207ENST00000570510 NRCAMQ92823 1304 aa12.86□□□□□ -0.35
VPS53-207ENST00000570510 FAM186AA6NE01 2351 aa12.85□□□□□ -0.35
VPS53-207ENST00000570510 TRIM6-TRIM34B2RNG4 842 aa12.85□□□□□ -0.35
VPS53-207ENST00000570510 M0QZ92 97 aa12.85□□□□□ -0.35
VPS53-207ENST00000570510 FGRP09769 529 aa12.85□□□□□ -0.35
VPS53-207ENST00000570510 SP4Q02446 784 aa12.85□□□□□ -0.35
VPS53-207ENST00000570510 UBE3AQ05086 875 aa12.85□□□□□ -0.35
VPS53-207ENST00000570510 NEDD9Q14511 834 aa12.85□□□□□ -0.35
VPS53-207ENST00000570510 LPIN1Q14693 890 aa12.85□□□□□ -0.35
VPS53-207ENST00000570510 PGM5Q15124 567 aa12.85□□□□□ -0.35
VPS53-207ENST00000570510 CES5AQ6NT32 575 aa12.85□□□□□ -0.35
VPS53-207ENST00000570510 TSHZ1Q6ZSZ6 1077 aa12.85□□□□□ -0.35
VPS53-207ENST00000570510 CYFIP1Q7L576 1253 aa12.85□□□□□ -0.35
VPS53-207ENST00000570510 VSIG10LQ86VR7 867 aa12.85□□□□□ -0.35
VPS53-207ENST00000570510 NPAS4Q8IUM7 802 aa12.85□□□□□ -0.35
VPS53-207ENST00000570510 THNSL1Q8IYQ7 743 aa12.85□□□□□ -0.35
VPS53-207ENST00000570510 LMBR1Q8WVP7 490 aa12.85□□□□□ -0.35
VPS53-207ENST00000570510 ZFP91Q96JP5 570 aaPredicted RBP12.85□□□□□ -0.35
VPS53-207ENST00000570510 ZKSCAN3Q9BRR0 538 aa12.85□□□□□ -0.35
VPS53-207ENST00000570510 AMNQ9BXJ7 453 aa12.85□□□□□ -0.35
VPS53-207ENST00000570510 FTHL17Q9BXU8 183 aa12.85□□□□□ -0.35
VPS53-207ENST00000570510 TMEM260Q9NX78 707 aa12.85□□□□□ -0.35
VPS53-207ENST00000570510 MAP3K20Q9NYL2 800 aaKnown RBP12.85□□□□□ -0.35
VPS53-207ENST00000570510 PCDHGC5Q9Y5F6 944 aa12.85□□□□□ -0.35
VPS53-207ENST00000570510 KIAA1217Q5T5P2 1943 aa12.84□□□□□ -0.35
VPS53-207ENST00000570510 RGS20O76081 388 aa12.84□□□□□ -0.35
VPS53-207ENST00000570510 PARP1P09874 1014 aaKnown RBP12.84□□□□□ -0.35
VPS53-207ENST00000570510 HOXA13P31271 388 aaPredicted RBP12.84□□□□□ -0.35
VPS53-207ENST00000570510 HAND2P61296 217 aa12.84□□□□□ -0.35
VPS53-207ENST00000570510 RBM10P98175 930 aaKnown RBP12.84□□□□□ -0.35
VPS53-207ENST00000570510 ASPRV1Q53RT3 343 aa12.84□□□□□ -0.35
VPS53-207ENST00000570510 CCDC178Q5BJE1 867 aa12.84□□□□□ -0.35
VPS53-207ENST00000570510 VPS53Q5VIR6 699 aa12.84□□□□□ -0.35
VPS53-207ENST00000570510 PDE12Q6L8Q7 609 aaKnown RBP12.84□□□□□ -0.35
VPS53-207ENST00000570510 LLGL2Q6P1M3 1020 aa12.84□□□□□ -0.35
VPS53-207ENST00000570510 FCHSD1Q86WN1 690 aa12.84□□□□□ -0.35
VPS53-207ENST00000570510 IQCA1Q86XH1 822 aa12.84□□□□□ -0.35
VPS53-207ENST00000570510 PNMA1Q8ND90 353 aa12.84□□□□□ -0.35
VPS53-207ENST00000570510 FLCNQ8NFG4 579 aa12.84□□□□□ -0.35
VPS53-207ENST00000570510 ESR2Q92731 530 aa12.84□□□□□ -0.35
VPS53-207ENST00000570510 RNF41Q9H4P4 317 aaPredicted RBP12.84□□□□□ -0.35
VPS53-207ENST00000570510 EHMT1Q9H9B1 1298 aa12.84□□□□□ -0.35
VPS53-207ENST00000570510 PUF60Q9UHX1 559 aaKnown RBP12.84□□□□□ -0.35
VPS53-207ENST00000570510 PCDHA1Q9Y5I3 950 aa12.84□□□□□ -0.35
VPS53-207ENST00000570510 TTC41PQ6P2S7 1318 aa12.84□□□□□ -0.35
VPS53-207ENST00000570510 MYH7BA7E2Y1 1941 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms