RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 FGFR1OPO95684 399 aaKnown RBP8.91□□□□□ -0.98
VPS39-213ENST00000570062 DNAJB2P25686 324 aa8.91□□□□□ -0.98
VPS39-213ENST00000570062 CCND2P30279 289 aa8.91□□□□□ -0.98
VPS39-213ENST00000570062 HOXA13P31271 388 aaPredicted RBP8.91□□□□□ -0.98
VPS39-213ENST00000570062 CCT6AP40227 531 aaKnown RBP8.91□□□□□ -0.98
VPS39-213ENST00000570062 AFMP43652 599 aa8.91□□□□□ -0.98
VPS39-213ENST00000570062 SNAP25P60880 206 aa8.91□□□□□ -0.98
VPS39-213ENST00000570062 PPP2R5CQ13362 524 aa8.91□□□□□ -0.98
VPS39-213ENST00000570062 KARSQ15046 597 aaKnown RBP8.91□□□□□ -0.98
VPS39-213ENST00000570062 EPHA7Q15375 998 aa8.91□□□□□ -0.98
VPS39-213ENST00000570062 DPCR1Q3MIW9 517 aa8.91□□□□□ -0.98
VPS39-213ENST00000570062 TMEM119Q4V9L6 283 aa8.91□□□□□ -0.98
VPS39-213ENST00000570062 ARHGEF16Q5VV41 709 aa8.91□□□□□ -0.98
VPS39-213ENST00000570062 SNRNP48Q6IEG0 339 aaKnown RBP8.91□□□□□ -0.98
VPS39-213ENST00000570062 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.91□□□□□ -0.98
VPS39-213ENST00000570062 LUZP1Q86V48 1076 aa8.91□□□□□ -0.98
VPS39-213ENST00000570062 RIOX2Q8IUF8 465 aa8.91□□□□□ -0.98
VPS39-213ENST00000570062 GIMAP8Q8ND71 665 aaPredicted RBP8.91□□□□□ -0.98
VPS39-213ENST00000570062 SYTL5Q8TDW5 730 aaPredicted RBP8.91□□□□□ -0.98
VPS39-213ENST00000570062 LARP4BQ92615 738 aaKnown RBP8.91□□□□□ -0.98
VPS39-213ENST00000570062 RAD54LQ92698 747 aa8.91□□□□□ -0.98
VPS39-213ENST00000570062 SLC5A5Q92911 643 aa8.91□□□□□ -0.98
VPS39-213ENST00000570062 ATG4CQ96DT6 458 aa8.91□□□□□ -0.98
VPS39-213ENST00000570062 MRFAP1L1Q96HT8 127 aa8.91□□□□□ -0.98
VPS39-213ENST00000570062 DHTKD1Q96HY7 919 aaPredicted RBP8.91□□□□□ -0.98
VPS39-213ENST00000570062 RMDN3Q96TC7 470 aa8.91□□□□□ -0.98
VPS39-213ENST00000570062 TEKT3Q9BXF9 490 aa8.91□□□□□ -0.98
VPS39-213ENST00000570062 TRIM5Q9C035 493 aa8.91□□□□□ -0.98
VPS39-213ENST00000570062 JADE2Q9NQC1 790 aa8.91□□□□□ -0.98
VPS39-213ENST00000570062 KCNG1Q9UIX4 513 aa8.91□□□□□ -0.98
VPS39-213ENST00000570062 ZNF214Q9UL59 606 aaPredicted RBP8.91□□□□□ -0.98
VPS39-213ENST00000570062 SCAF8Q9UPN6 1271 aaKnown RBP8.91□□□□□ -0.98
VPS39-213ENST00000570062 IGLV3-22A0A075B6J6 115 aa8.9□□□□□ -0.98
VPS39-213ENST00000570062 FAM86B1E9PN63 330 aa8.9□□□□□ -0.98
VPS39-213ENST00000570062 MSH4O15457 936 aa8.9□□□□□ -0.98
VPS39-213ENST00000570062 EDIL3O43854 480 aa8.9□□□□□ -0.98
VPS39-213ENST00000570062 ADCY5O95622 1261 aa8.9□□□□□ -0.98
VPS39-213ENST00000570062 PTMAP06454 111 aaKnown RBP8.9□□□□□ -0.98
VPS39-213ENST00000570062 FAM86B2P0C5J1 330 aa8.9□□□□□ -0.98
VPS39-213ENST00000570062 CETPP11597 493 aa8.9□□□□□ -0.98
VPS39-213ENST00000570062 PLCG1P19174 1290 aa8.9□□□□□ -0.98
VPS39-213ENST00000570062 SFNP31947 248 aa8.9□□□□□ -0.98
VPS39-213ENST00000570062 GTF2A2P52657 109 aa8.9□□□□□ -0.98
VPS39-213ENST00000570062 RPS6P62753 249 aaKnown RBP8.9□□□□□ -0.98
VPS39-213ENST00000570062 CCNA1P78396 465 aa8.9□□□□□ -0.98
VPS39-213ENST00000570062 PLCB2Q00722 1185 aa8.9□□□□□ -0.98
VPS39-213ENST00000570062 PRKG1Q13976 671 aa8.9□□□□□ -0.98
VPS39-213ENST00000570062 FILIP1LQ4L180 1135 aa8.9□□□□□ -0.98
VPS39-213ENST00000570062 LRCH2Q5VUJ6 765 aa8.9□□□□□ -0.98
VPS39-213ENST00000570062 SPATA1Q5VX52 437 aa8.9□□□□□ -0.98
VPS39-213ENST00000570062 KCNV1Q6PIU1 500 aa8.9□□□□□ -0.98
VPS39-213ENST00000570062 BLOC1S3Q6QNY0 202 aa8.9□□□□□ -0.98
VPS39-213ENST00000570062 OTOP1Q7RTM1 612 aa8.9□□□□□ -0.98
VPS39-213ENST00000570062 CCDC84Q86UT8 332 aaPredicted RBP8.9□□□□□ -0.98
VPS39-213ENST00000570062 DHX40Q8IX18 779 aaKnown RBP8.9□□□□□ -0.98
VPS39-213ENST00000570062 CCDC65Q8IXS2 484 aa8.9□□□□□ -0.98
VPS39-213ENST00000570062 SHCBP1Q8NEM2 672 aa8.9□□□□□ -0.98
VPS39-213ENST00000570062 REPS2Q8NFH8 660 aa8.9□□□□□ -0.98
VPS39-213ENST00000570062 GPRASP2Q96D09 838 aa8.9□□□□□ -0.98
VPS39-213ENST00000570062 NACC1Q96RE7 527 aa8.9□□□□□ -0.98
VPS39-213ENST00000570062 ZNF577Q9BSK1 485 aa8.9□□□□□ -0.98
VPS39-213ENST00000570062 TRIM9Q9C026 710 aa8.9□□□□□ -0.98
VPS39-213ENST00000570062 MROH8Q9H579 483 aa8.9□□□□□ -0.98
VPS39-213ENST00000570062 ELP3Q9H9T3 547 aa8.9□□□□□ -0.98
VPS39-213ENST00000570062 EXOC1Q9NV70 894 aa8.9□□□□□ -0.98
VPS39-213ENST00000570062 IMPACTQ9P2X3 320 aa8.9□□□□□ -0.98
VPS39-213ENST00000570062 RWDD2AQ9UIY3 292 aa8.9□□□□□ -0.98
VPS39-213ENST00000570062 UBIAD1Q9Y5Z9 338 aa8.9□□□□□ -0.98
VPS39-213ENST00000570062 A0A087X0B3 334 aa8.89□□□□□ -0.99
VPS39-213ENST00000570062 IPO5O00410 1097 aaKnown RBP8.89□□□□□ -0.99
VPS39-213ENST00000570062 BIN1O00499 593 aa8.89□□□□□ -0.99
VPS39-213ENST00000570062 EIF3JO75822 258 aaKnown RBP8.89□□□□□ -0.99
VPS39-213ENST00000570062 PSMD10O75832 226 aa8.89□□□□□ -0.99
VPS39-213ENST00000570062 TPM2P07951 284 aa8.89□□□□□ -0.99
VPS39-213ENST00000570062 ZBTB48P10074 688 aaPredicted RBP8.89□□□□□ -0.99
VPS39-213ENST00000570062 CDK11BP21127 795 aaKnown RBP8.89□□□□□ -0.99
VPS39-213ENST00000570062 GCLCP48506 637 aaPredicted RBP8.89□□□□□ -0.99
VPS39-213ENST00000570062 JAK3P52333 1124 aa8.89□□□□□ -0.99
VPS39-213ENST00000570062 GSDMDP57764 484 aa8.89□□□□□ -0.99
VPS39-213ENST00000570062 KRT76Q01546 638 aa8.89□□□□□ -0.99
VPS39-213ENST00000570062 GRB10Q13322 594 aa8.89□□□□□ -0.99
VPS39-213ENST00000570062 MTMR1Q13613 665 aa8.89□□□□□ -0.99
VPS39-213ENST00000570062 TMEM132BQ14DG7 1078 aa8.89□□□□□ -0.99
VPS39-213ENST00000570062 TPD52L1Q16890 204 aaPredicted RBP8.89□□□□□ -0.99
VPS39-213ENST00000570062 NAALADL2Q58DX5 795 aa8.89□□□□□ -0.99
VPS39-213ENST00000570062 GADL1Q6ZQY3 521 aa8.89□□□□□ -0.99
VPS39-213ENST00000570062 UNC13DQ70J99 1090 aa8.89□□□□□ -0.99
VPS39-213ENST00000570062 VSIG10LQ86VR7 867 aa8.89□□□□□ -0.99
VPS39-213ENST00000570062 FAM114A1Q8IWE2 563 aa8.89□□□□□ -0.99
VPS39-213ENST00000570062 AOPEPQ8N6M6 819 aa8.89□□□□□ -0.99
VPS39-213ENST00000570062 LENG9Q96B70 501 aa8.89□□□□□ -0.99
VPS39-213ENST00000570062 OPTNQ96CV9 577 aa8.89□□□□□ -0.99
VPS39-213ENST00000570062 PDCD2LQ9BRP1 358 aa8.89□□□□□ -0.99
VPS39-213ENST00000570062 MMTAG2Q9BU76 263 aaKnown RBP8.89□□□□□ -0.99
VPS39-213ENST00000570062 TIPINQ9BVW5 301 aa8.89□□□□□ -0.99
VPS39-213ENST00000570062 ZCCHC17Q9NP64 241 aaKnown RBP8.89□□□□□ -0.99
VPS39-213ENST00000570062 PXMP2Q9NR77 195 aa8.89□□□□□ -0.99
VPS39-213ENST00000570062 FRMD4AQ9P2Q2 1039 aaPredicted RBP8.89□□□□□ -0.99
VPS39-213ENST00000570062 SSC5DA1L4H1 1573 aa8.89□□□□□ -0.99
VPS39-213ENST00000570062 SBF1O95248 1867 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms