RNA–Protein interactions for RNA: ENST00000569036.2

CDH3-208, Transcript of cadherin 3, humanhuman

TSL 4

Gene CDH3, Length 563 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-208ENST00000569036 NECTIN4Q96NY8 510 aa13.26□□□□□ -0.29
CDH3-208ENST00000569036 CACNA1IQ9P0X4 2223 aa13.26□□□□□ -0.29
CDH3-208ENST00000569036 NCDNQ9UBB6 729 aa13.26□□□□□ -0.29
CDH3-208ENST00000569036 DENND4AQ7Z401 1863 aa13.25□□□□□ -0.29
CDH3-208ENST00000569036 GHRP10912 638 aa13.25□□□□□ -0.29
CDH3-208ENST00000569036 ERVFC1P60507 584 aa13.25□□□□□ -0.29
CDH3-208ENST00000569036 ATP8B2P98198 1209 aa13.25□□□□□ -0.29
CDH3-208ENST00000569036 UBE3AQ05086 875 aa13.25□□□□□ -0.29
CDH3-208ENST00000569036 PPM1JQ5JR12 505 aa13.25□□□□□ -0.29
CDH3-208ENST00000569036 FAM26DQ5JW98 314 aa13.25□□□□□ -0.29
CDH3-208ENST00000569036 VARS2Q5ST30 1063 aaKnown RBP13.25□□□□□ -0.29
CDH3-208ENST00000569036 GPR161Q8N6U8 529 aaKnown RBP13.25□□□□□ -0.29
CDH3-208ENST00000569036 NEDD1Q8NHV4 660 aa13.25□□□□□ -0.29
CDH3-208ENST00000569036 RASGRP4Q8TDF6 673 aa13.25□□□□□ -0.29
CDH3-208ENST00000569036 DDX41Q9UJV9 622 aaKnown RBP13.25□□□□□ -0.29
CDH3-208ENST00000569036 FBXL21Q9UKT6 434 aa13.25□□□□□ -0.29
CDH3-208ENST00000569036 ASH1LQ9NR48 2969 aaKnown RBP13.24□□□□□ -0.29
CDH3-208ENST00000569036 FSCN2O14926 492 aa13.24□□□□□ -0.29
CDH3-208ENST00000569036 SMIM10L2AP0DMW4 78 aa13.24□□□□□ -0.29
CDH3-208ENST00000569036 SMIM10L2BP0DMW5 78 aa13.24□□□□□ -0.29
CDH3-208ENST00000569036 LAMC2Q13753 1193 aa13.24□□□□□ -0.29
CDH3-208ENST00000569036 LINC01599Q8WXQ3 324 aa13.24□□□□□ -0.29
CDH3-208ENST00000569036 C16orf70Q9BSU1 422 aa13.24□□□□□ -0.29
CDH3-208ENST00000569036 PUS7LQ9H0K6 701 aaKnown RBP13.24□□□□□ -0.29
CDH3-208ENST00000569036 ADAM7Q9H2U9 754 aa13.24□□□□□ -0.29
CDH3-208ENST00000569036 RNF216Q9NWF9 866 aaPredicted RBP13.24□□□□□ -0.29
CDH3-208ENST00000569036 KINO60870 393 aaKnown RBP13.23□□□□□ -0.29
CDH3-208ENST00000569036 TSPY3P0CV98 308 aa13.23□□□□□ -0.29
CDH3-208ENST00000569036 TSPY8P0CW00 308 aa13.23□□□□□ -0.29
CDH3-208ENST00000569036 SLC16A2P36021 539 aa13.23□□□□□ -0.29
CDH3-208ENST00000569036 ITIH3Q06033 890 aa13.23□□□□□ -0.29
CDH3-208ENST00000569036 SLFN5Q08AF3 891 aa13.23□□□□□ -0.29
CDH3-208ENST00000569036 UBE3CQ15386 1083 aa13.23□□□□□ -0.29
CDH3-208ENST00000569036 TPRNQ4KMQ1 711 aa13.23□□□□□ -0.29
CDH3-208ENST00000569036 TTBK2Q6IQ55 1244 aa13.23□□□□□ -0.29
CDH3-208ENST00000569036 PDE12Q6L8Q7 609 aaKnown RBP13.23□□□□□ -0.29
CDH3-208ENST00000569036 CES5AQ6NT32 575 aa13.23□□□□□ -0.29
CDH3-208ENST00000569036 PLCD3Q8N3E9 789 aa13.23□□□□□ -0.29
CDH3-208ENST00000569036 ARHGAP45Q92619 1136 aa13.23□□□□□ -0.29
CDH3-208ENST00000569036 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.23□□□□□ -0.29
CDH3-208ENST00000569036 EHMT1Q9H9B1 1298 aa13.23□□□□□ -0.29
CDH3-208ENST00000569036 ZNF287Q9HBT7 754 aa13.23□□□□□ -0.29
CDH3-208ENST00000569036 PAG1Q9NWQ8 432 aa13.23□□□□□ -0.29
CDH3-208ENST00000569036 PPP4R2Q9NY27 417 aa13.23□□□□□ -0.29
CDH3-208ENST00000569036 DUSP12Q9UNI6 340 aa13.23□□□□□ -0.29
CDH3-208ENST00000569036 GSG1L2A8MUP6 293 aa13.22□□□□□ -0.29
CDH3-208ENST00000569036 PPFIA4O75335 1185 aa13.22□□□□□ -0.29
CDH3-208ENST00000569036 CHRNA1P02708 482 aa13.22□□□□□ -0.29
CDH3-208ENST00000569036 WEE2P0C1S8 567 aa13.22□□□□□ -0.29
CDH3-208ENST00000569036 MTHFRP42898 656 aa13.22□□□□□ -0.29
CDH3-208ENST00000569036 GATMP50440 423 aa13.22□□□□□ -0.29
CDH3-208ENST00000569036 TDGQ13569 410 aa13.22□□□□□ -0.29
CDH3-208ENST00000569036 LPIN1Q14693 890 aa13.22□□□□□ -0.29
CDH3-208ENST00000569036 CCDC96Q2M329 555 aa13.22□□□□□ -0.29
CDH3-208ENST00000569036 SYDE2Q5VT97 1194 aa13.22□□□□□ -0.29
CDH3-208ENST00000569036 PLPP4Q5VZY2 271 aa13.22□□□□□ -0.29
CDH3-208ENST00000569036 NPAS4Q8IUM7 802 aa13.22□□□□□ -0.29
CDH3-208ENST00000569036 RNPEPQ9H4A4 650 aa13.22□□□□□ -0.29
CDH3-208ENST00000569036 ANGPTL2Q9UKU9 493 aa13.22□□□□□ -0.29
CDH3-208ENST00000569036 TNNQ9UQP3 1299 aa13.22□□□□□ -0.29
CDH3-208ENST00000569036 MTMR7Q9Y216 660 aa13.22□□□□□ -0.29
CDH3-208ENST00000569036 MAST4O15021 2626 aa13.22□□□□□ -0.29
CDH3-208ENST00000569036 FNDC1Q4ZHG4 1894 aaPredicted RBP13.21□□□□□ -0.29
CDH3-208ENST00000569036 CNOT1A5YKK6 2376 aaKnown RBP13.21□□□□□ -0.29
CDH3-208ENST00000569036 SOBPA7XYQ1 873 aa13.21□□□□□ -0.29
CDH3-208ENST00000569036 STK25O00506 426 aa13.21□□□□□ -0.29
CDH3-208ENST00000569036 FGF18O76093 207 aa13.21□□□□□ -0.29
CDH3-208ENST00000569036 RARSP54136 660 aaKnown RBP13.21□□□□□ -0.29
CDH3-208ENST00000569036 TBC1D8BQ0IIM8 1120 aa13.21□□□□□ -0.29
CDH3-208ENST00000569036 APOBRQ0VD83 1088 aa13.21□□□□□ -0.29
CDH3-208ENST00000569036 STXBP2Q15833 593 aa13.21□□□□□ -0.29
CDH3-208ENST00000569036 HSDL1Q3SXM5 330 aa13.21□□□□□ -0.29
CDH3-208ENST00000569036 GIMAP6Q6P9H5 292 aa13.21□□□□□ -0.29
CDH3-208ENST00000569036 BTNL9Q6UXG8 535 aa13.21□□□□□ -0.29
CDH3-208ENST00000569036 CASP10Q92851 521 aa13.21□□□□□ -0.29
CDH3-208ENST00000569036 STRBPQ96SI9 672 aaKnown RBP13.21□□□□□ -0.29
CDH3-208ENST00000569036 C1orf115Q9H7X2 142 aa13.21□□□□□ -0.29
CDH3-208ENST00000569036 CYP26B1Q9NR63 512 aa13.21□□□□□ -0.29
CDH3-208ENST00000569036 USTQ9Y2C2 406 aa13.21□□□□□ -0.29
CDH3-208ENST00000569036 PCDHB12Q9Y5F1 795 aa13.21□□□□□ -0.29
CDH3-208ENST00000569036 MRVI1Q9Y6F6 885 aa13.21□□□□□ -0.29
CDH3-208ENST00000569036 NBEAQ8NFP9 2946 aa13.2□□□□□ -0.3
CDH3-208ENST00000569036 KRBA1A5PL33 1030 aa13.2□□□□□ -0.3
CDH3-208ENST00000569036 HIDE1A8MVS5 230 aa13.2□□□□□ -0.3
CDH3-208ENST00000569036 H3BRB1 525 aa13.2□□□□□ -0.3
CDH3-208ENST00000569036 SORBS3O60504 671 aa13.2□□□□□ -0.3
CDH3-208ENST00000569036 EOMESO95936 686 aa13.2□□□□□ -0.3
CDH3-208ENST00000569036 TFAP4Q01664 338 aa13.2□□□□□ -0.3
CDH3-208ENST00000569036 SPECC1Q5M775 1068 aa13.2□□□□□ -0.3
CDH3-208ENST00000569036 MYSM1Q5VVJ2 828 aa13.2□□□□□ -0.3
CDH3-208ENST00000569036 C1orf210Q8IVY1 113 aa13.2□□□□□ -0.3
CDH3-208ENST00000569036 SPATA33Q96N06 139 aa13.2□□□□□ -0.3
CDH3-208ENST00000569036 TUT1Q9H6E5 874 aaKnown RBP13.2□□□□□ -0.3
CDH3-208ENST00000569036 EPB41L4AQ9HCS5 686 aaPredicted RBP13.2□□□□□ -0.3
CDH3-208ENST00000569036 IL1RAPL2Q9NP60 686 aa13.2□□□□□ -0.3
CDH3-208ENST00000569036 TMEM260Q9NX78 707 aa13.2□□□□□ -0.3
CDH3-208ENST00000569036 DLGAP2Q9P1A6 1054 aa13.2□□□□□ -0.3
CDH3-208ENST00000569036 USP18Q9UMW8 372 aa13.2□□□□□ -0.3
CDH3-208ENST00000569036 STX8Q9UNK0 236 aa13.2□□□□□ -0.3
CDH3-208ENST00000569036 SPTLC1O15269 473 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms