RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 CCDC40Q4G0X9 1142 aa22.44■■□□□ 1.18
CLN3-230ENST00000568076 SFR1Q86XK3 245 aa22.44■■□□□ 1.18
CLN3-230ENST00000568076 CCDC170Q8IYT3 715 aa22.44■■□□□ 1.18
CLN3-230ENST00000568076 SLC5A5Q92911 643 aa22.44■■□□□ 1.18
CLN3-230ENST00000568076 FEZ1Q99689 392 aa22.44■■□□□ 1.18
CLN3-230ENST00000568076 RUSC1Q9BVN2 902 aa22.44■■□□□ 1.18
CLN3-230ENST00000568076 EPC1Q9H2F5 836 aa22.44■■□□□ 1.18
CLN3-230ENST00000568076 HAUS4Q9H6D7 363 aa22.44■■□□□ 1.18
CLN3-230ENST00000568076 CDC23Q9UJX2 597 aa22.44■■□□□ 1.18
CLN3-230ENST00000568076 EIF3CLB5ME19 914 aaKnown RBP22.43■■□□□ 1.18
CLN3-230ENST00000568076 PLEKP08567 350 aaPredicted RBP22.43■■□□□ 1.18
CLN3-230ENST00000568076 CYLC1P35663 651 aaPredicted RBP22.43■■□□□ 1.18
CLN3-230ENST00000568076 AGBL1Q96MI9 1066 aa22.43■■□□□ 1.18
CLN3-230ENST00000568076 EIF3CQ99613 913 aaKnown RBP22.43■■□□□ 1.18
CLN3-230ENST00000568076 ZNF446Q9NWS9 450 aa22.43■■□□□ 1.18
CLN3-230ENST00000568076 ZNF536O15090 1300 aa22.43■■□□□ 1.18
CLN3-230ENST00000568076 RCCD1A6NED2 376 aa22.43■■□□□ 1.18
CLN3-230ENST00000568076 RSPH10B2B2RC85 870 aa22.43■■□□□ 1.18
CLN3-230ENST00000568076 NFKBIEO00221 500 aa22.43■■□□□ 1.18
CLN3-230ENST00000568076 EYA4O95677 639 aa22.43■■□□□ 1.18
CLN3-230ENST00000568076 RSPH10BP0C881 870 aa22.43■■□□□ 1.18
CLN3-230ENST00000568076 HOXD13P35453 343 aa22.43■■□□□ 1.18
CLN3-230ENST00000568076 MARSP56192 900 aaKnown RBP22.43■■□□□ 1.18
CLN3-230ENST00000568076 KRT83P78385 493 aa22.43■■□□□ 1.18
CLN3-230ENST00000568076 PPP2R5CQ13362 524 aa22.43■■□□□ 1.18
CLN3-230ENST00000568076 CTTNQ14247 550 aaKnown RBP22.43■■□□□ 1.18
CLN3-230ENST00000568076 CEP55Q53EZ4 464 aa22.43■■□□□ 1.18
CLN3-230ENST00000568076 DALRD3Q5D0E6 543 aaKnown RBP22.43■■□□□ 1.18
CLN3-230ENST00000568076 LRCH2Q5VUJ6 765 aa22.43■■□□□ 1.18
CLN3-230ENST00000568076 EPM2AIP1Q7L775 607 aaPredicted RBP22.43■■□□□ 1.18
CLN3-230ENST00000568076 SMCR8Q8TEV9 937 aaPredicted RBP22.43■■□□□ 1.18
CLN3-230ENST00000568076 JDP2Q8WYK2 163 aa22.43■■□□□ 1.18
CLN3-230ENST00000568076 BAP1Q92560 729 aa22.43■■□□□ 1.18
CLN3-230ENST00000568076 NAPGQ99747 312 aaPredicted RBP22.43■■□□□ 1.18
CLN3-230ENST00000568076 DDX41Q9UJV9 622 aaKnown RBP22.43■■□□□ 1.18
CLN3-230ENST00000568076 RABGAP1Q9Y3P9 1069 aa22.43■■□□□ 1.18
CLN3-230ENST00000568076 FER1L6Q2WGJ9 1857 aa22.42■■□□□ 1.18
CLN3-230ENST00000568076 SLITRK3O94933 977 aa22.42■■□□□ 1.18
CLN3-230ENST00000568076 KIF20AO95235 890 aa22.42■■□□□ 1.18
CLN3-230ENST00000568076 ZNF662Q6ZS27 426 aa22.42■■□□□ 1.18
CLN3-230ENST00000568076 TRIM59Q8IWR1 403 aa22.42■■□□□ 1.18
CLN3-230ENST00000568076 TANGO6Q9C0B7 1094 aa22.42■■□□□ 1.18
CLN3-230ENST00000568076 LACRTQ9GZZ8 138 aa22.42■■□□□ 1.18
CLN3-230ENST00000568076 ARHGAP20Q9P2F6 1191 aa22.42■■□□□ 1.18
CLN3-230ENST00000568076 ZNF263O14978 683 aa22.41■■□□□ 1.18
CLN3-230ENST00000568076 CHMP2AO43633 222 aa22.41■■□□□ 1.18
CLN3-230ENST00000568076 TFRCP02786 760 aaKnown RBP22.41■■□□□ 1.18
CLN3-230ENST00000568076 ARP10275 920 aa22.41■■□□□ 1.18
CLN3-230ENST00000568076 CLCN6P51797 869 aa22.41■■□□□ 1.18
CLN3-230ENST00000568076 ZNF280AP59817 542 aaPredicted RBP22.41■■□□□ 1.18
CLN3-230ENST00000568076 CBX1P83916 185 aa22.41■■□□□ 1.18
CLN3-230ENST00000568076 EDRF1Q3B7T1 1238 aa22.41■■□□□ 1.18
CLN3-230ENST00000568076 PIGOQ8TEQ8 1089 aa22.41■■□□□ 1.18
CLN3-230ENST00000568076 DYDC2Q96IM9 177 aa22.41■■□□□ 1.18
CLN3-230ENST00000568076 DEFB129Q9H1M3 183 aa22.41■■□□□ 1.18
CLN3-230ENST00000568076 POLD4Q9HCU8 107 aa22.41■■□□□ 1.18
CLN3-230ENST00000568076 RBBP6Q7Z6E9 1792 aaKnown RBP22.41■■□□□ 1.18
CLN3-230ENST00000568076 ATAD5Q96QE3 1844 aa22.41■■□□□ 1.18
CLN3-230ENST00000568076 GNA14O95837 355 aa22.41■■□□□ 1.18
CLN3-230ENST00000568076 MYBP10242 640 aa22.41■■□□□ 1.18
CLN3-230ENST00000568076 POLD1P28340 1107 aa22.41■■□□□ 1.18
CLN3-230ENST00000568076 ADAM9Q13443 819 aa22.41■■□□□ 1.18
CLN3-230ENST00000568076 CCDC122Q5T0U0 273 aa22.41■■□□□ 1.18
CLN3-230ENST00000568076 PPP4R3CPQ6ZMV5 832 aa22.41■■□□□ 1.18
CLN3-230ENST00000568076 LRRC53A6NM62 1247 aa22.4■■□□□ 1.18
CLN3-230ENST00000568076 ICAM1P05362 532 aa22.4■■□□□ 1.18
CLN3-230ENST00000568076 HSD17B4P51659 736 aa22.4■■□□□ 1.18
CLN3-230ENST00000568076 AMPD2Q01433 879 aa22.4■■□□□ 1.18
CLN3-230ENST00000568076 CYP27A1Q02318 531 aa22.4■■□□□ 1.18
CLN3-230ENST00000568076 DGKZQ13574 1117 aa22.4■■□□□ 1.18
CLN3-230ENST00000568076 TEX35Q5T0J7 233 aa22.4■■□□□ 1.18
CLN3-230ENST00000568076 RINT1Q6NUQ1 792 aa22.4■■□□□ 1.18
CLN3-230ENST00000568076 SRGAP1Q7Z6B7 1085 aa22.4■■□□□ 1.18
CLN3-230ENST00000568076 TUFT1Q9NNX1 390 aa22.4■■□□□ 1.18
CLN3-230ENST00000568076 ZBTB39O15060 712 aa22.39■■□□□ 1.18
CLN3-230ENST00000568076 KNOP1Q1ED39 458 aaKnown RBP22.39■■□□□ 1.18
CLN3-230ENST00000568076 RRAGAQ7L523 313 aa22.39■■□□□ 1.18
CLN3-230ENST00000568076 TPH2Q8IWU9 490 aa22.39■■□□□ 1.18
CLN3-230ENST00000568076 JAKMIP2Q96AA8 810 aa22.39■■□□□ 1.18
CLN3-230ENST00000568076 ZSWIM4Q9H7M6 989 aa22.39■■□□□ 1.18
CLN3-230ENST00000568076 EHMT1Q9H9B1 1298 aa22.39■■□□□ 1.18
CLN3-230ENST00000568076 COL20A1Q9P218 1284 aa22.39■■□□□ 1.18
CLN3-230ENST00000568076 CCPG1Q9ULG6 757 aa22.39■■□□□ 1.18
CLN3-230ENST00000568076 TRAF3IP3Q9Y228 551 aa22.39■■□□□ 1.18
CLN3-230ENST00000568076 ASTN2O75129 1339 aaPredicted RBP22.39■■□□□ 1.18
CLN3-230ENST00000568076 GAS7O60861 476 aa22.39■■□□□ 1.17
CLN3-230ENST00000568076 NOL4O94818 638 aa22.39■■□□□ 1.17
CLN3-230ENST00000568076 PRPF6O94906 941 aaKnown RBP22.39■■□□□ 1.17
CLN3-230ENST00000568076 ZSCAN20P17040 1043 aaPredicted RBP22.39■■□□□ 1.17
CLN3-230ENST00000568076 PRELPP51888 382 aa22.39■■□□□ 1.17
CLN3-230ENST00000568076 TUBB2AQ13885 445 aa22.39■■□□□ 1.17
CLN3-230ENST00000568076 TNIP1Q15025 636 aa22.39■■□□□ 1.17
CLN3-230ENST00000568076 KRT26Q7Z3Y9 468 aa22.39■■□□□ 1.17
CLN3-230ENST00000568076 KIAA1328Q86T90 577 aa22.39■■□□□ 1.17
CLN3-230ENST00000568076 KCTD17Q8N5Z5 321 aa22.39■■□□□ 1.17
CLN3-230ENST00000568076 NEK11Q8NG66 645 aa22.39■■□□□ 1.17
CLN3-230ENST00000568076 CCDC42Q96M95 316 aa22.39■■□□□ 1.17
CLN3-230ENST00000568076 TUBB2BQ9BVA1 445 aa22.39■■□□□ 1.17
CLN3-230ENST00000568076 WRAP73Q9P2S5 460 aaPredicted RBP22.39■■□□□ 1.17
CLN3-230ENST00000568076 PUF60Q9UHX1 559 aaKnown RBP22.39■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms