RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 VWCEQ96DN2 955 aa21.31■■□□□ 1
CLN3-227ENST00000567495 LARP6Q9BRS8 491 aaKnown RBP21.31■■□□□ 1
CLN3-227ENST00000567495 SEMA6BQ9H3T3 888 aa21.31■■□□□ 1
CLN3-227ENST00000567495 RNPEPQ9H4A4 650 aa21.31■■□□□ 1
CLN3-227ENST00000567495 AGO4Q9HCK5 861 aaKnown RBP21.31■■□□□ 1
CLN3-227ENST00000567495 PKD2L1Q9P0L9 805 aa21.31■■□□□ 1
CLN3-227ENST00000567495 CXXC1Q9P0U4 656 aaPredicted RBP21.31■■□□□ 1
CLN3-227ENST00000567495 VPS54Q9P1Q0 977 aa21.31■■□□□ 1
CLN3-227ENST00000567495 STXBP5LQ9Y2K9 1186 aa21.31■■□□□ 1
CLN3-227ENST00000567495 LAMA2P24043 3122 aaKnown RBP21.31■■□□□ 1
CLN3-227ENST00000567495 NRCAMQ92823 1304 aa21.3■■□□□ 1
CLN3-227ENST00000567495 GSTTP1A0A1W2PQM5 241 aa21.3■■□□□ 1
CLN3-227ENST00000567495 DNAJB2P25686 324 aa21.3■■□□□ 1
CLN3-227ENST00000567495 SETQ01105 290 aaPredicted RBP21.3■■□□□ 1
CLN3-227ENST00000567495 STK3Q13188 491 aa21.3■■□□□ 1
CLN3-227ENST00000567495 TRIM71Q2Q1W2 868 aaKnown RBP21.3■■□□□ 1
CLN3-227ENST00000567495 TRIM50Q86XT4 487 aa21.3■■□□□ 1
CLN3-227ENST00000567495 GLG1Q92896 1179 aa21.3■■□□□ 1
CLN3-227ENST00000567495 AZI2Q9H6S1 392 aa21.3■■□□□ 1
CLN3-227ENST00000567495 PFKFB2O60825 505 aa21.29■■□□□ 1
CLN3-227ENST00000567495 PPFIA3O75145 1194 aa21.29■■□□□ 1
CLN3-227ENST00000567495 BAIAP3O94812 1187 aa21.29■■□□□ 1
CLN3-227ENST00000567495 ARP10275 920 aa21.29■■□□□ 1
CLN3-227ENST00000567495 ZNF200P98182 395 aaPredicted RBP21.29■■□□□ 1
CLN3-227ENST00000567495 PLA2G4DQ86XP0 818 aa21.29■■□□□ 1
CLN3-227ENST00000567495 TIFAQ96CG3 184 aa21.29■■□□□ 1
CLN3-227ENST00000567495 MSRAQ9UJ68 235 aa21.29■■□□□ 1
CLN3-227ENST00000567495 TPCN1Q9ULQ1 816 aa21.29■■□□□ 1
CLN3-227ENST00000567495 EMSYQ7Z589 1322 aa21.29■■□□□ 1
CLN3-227ENST00000567495 ZBBXA8MT70 800 aa21.28■■□□□ 1
CLN3-227ENST00000567495 FAM86B1E9PN63 330 aa21.28■■□□□ 1
CLN3-227ENST00000567495 LGR5O75473 907 aa21.28■■□□□ 1
CLN3-227ENST00000567495 CXCL10P02778 98 aa21.28■■□□□ 1
CLN3-227ENST00000567495 FAM86B2P0C5J1 330 aa21.28■■□□□ 1
CLN3-227ENST00000567495 CIITAP33076 1130 aa21.28■■□□□ 1
CLN3-227ENST00000567495 USP11P51784 963 aa21.28■■□□□ 1
CLN3-227ENST00000567495 ACTR2P61160 394 aa21.28■■□□□ 1
CLN3-227ENST00000567495 PHOSPHO2Q8TCD6 241 aa21.28■■□□□ 1
CLN3-227ENST00000567495 TBC1D22BQ9NU19 505 aa21.28■■□□□ 1
CLN3-227ENST00000567495 SETD4Q9NVD3 440 aa21.28■■□□□ 1
CLN3-227ENST00000567495 PCDHA4Q9UN74 947 aa21.28■■□□□ 1
CLN3-227ENST00000567495 TELO2Q9Y4R8 837 aa21.28■■□□□ 1
CLN3-227ENST00000567495 TREHO43280 583 aa21.27■■□□□ 1
CLN3-227ENST00000567495 ATP2A2P16615 1042 aaKnown RBP21.27■■□□□ 1
CLN3-227ENST00000567495 XBP1P17861 261 aa21.27■■□□□ 1
CLN3-227ENST00000567495 THPOP40225 353 aa21.27■■□□□ 1
CLN3-227ENST00000567495 AK2P54819 239 aa21.27■■□□□ 1
CLN3-227ENST00000567495 SCRN1Q12765 414 aa21.27■■□□□ 1
CLN3-227ENST00000567495 ITGB3BPQ13352 177 aaPredicted RBP21.27■■□□□ 1
CLN3-227ENST00000567495 HIC1Q14526 733 aa21.27■■□□□ 1
CLN3-227ENST00000567495 ZNF618Q5T7W0 954 aa21.27■■□□□ 1
CLN3-227ENST00000567495 TAF2Q6P1X5 1199 aa21.27■■□□□ 1
CLN3-227ENST00000567495 PLPPR4Q7Z2D5 763 aa21.27■■□□□ 1
CLN3-227ENST00000567495 DAGLBQ8NCG7 672 aa21.27■■□□□ 1
CLN3-227ENST00000567495 LMBR1Q8WVP7 490 aa21.27■■□□□ 1
CLN3-227ENST00000567495 PBX4Q9BYU1 374 aa21.27■■□□□ 1
CLN3-227ENST00000567495 MYH7BA7E2Y1 1941 aa21.27■■□□□ 1
CLN3-227ENST00000567495 STK36Q9NRP7 1315 aa21.27■□□□□ 0.99
CLN3-227ENST00000567495 IGLV3-22A0A075B6J6 115 aa21.26■□□□□ 0.99
CLN3-227ENST00000567495 RSPH10B2B2RC85 870 aa21.26■□□□□ 0.99
CLN3-227ENST00000567495 IPO5O00410 1097 aaKnown RBP21.26■□□□□ 0.99
CLN3-227ENST00000567495 EFCAB14O75071 495 aa21.26■□□□□ 0.99
CLN3-227ENST00000567495 RPLP2P05387 115 aaKnown RBP21.26■□□□□ 0.99
CLN3-227ENST00000567495 RSPH10BP0C881 870 aa21.26■□□□□ 0.99
CLN3-227ENST00000567495 SLC26A2P50443 739 aa21.26■□□□□ 0.99
CLN3-227ENST00000567495 ADAM17P78536 824 aa21.26■□□□□ 0.99
CLN3-227ENST00000567495 PPFIA1Q13136 1202 aa21.26■□□□□ 0.99
CLN3-227ENST00000567495 FAM161BQ96MY7 647 aa21.26■□□□□ 0.99
CLN3-227ENST00000567495 SLC9A7Q96T83 725 aa21.26■□□□□ 0.99
CLN3-227ENST00000567495 ZNF577Q9BSK1 485 aa21.26■□□□□ 0.99
CLN3-227ENST00000567495 TTYH1Q9H313 450 aaPredicted RBP21.26■□□□□ 0.99
CLN3-227ENST00000567495 TCEAL9Q9UHQ7 104 aa21.26■□□□□ 0.99
CLN3-227ENST00000567495 ABHD14A-ACY1A0A1B0GW23 586 aa21.25■□□□□ 0.99
CLN3-227ENST00000567495 RRN3P2A6NIE6 340 aa21.25■□□□□ 0.99
CLN3-227ENST00000567495 GRXCR1A8MXD5 290 aa21.25■□□□□ 0.99
CLN3-227ENST00000567495 ATG7O95352 703 aa21.25■□□□□ 0.99
CLN3-227ENST00000567495 STAT5BP51692 787 aa21.25■□□□□ 0.99
CLN3-227ENST00000567495 NEK4P51957 841 aa21.25■□□□□ 0.99
CLN3-227ENST00000567495 GPNMBQ14956 572 aa21.25■□□□□ 0.99
CLN3-227ENST00000567495 CNKSR3Q6P9H4 555 aa21.25■□□□□ 0.99
CLN3-227ENST00000567495 TRAF7Q6Q0C0 670 aa21.25■□□□□ 0.99
CLN3-227ENST00000567495 RPAINQ86UA6 219 aa21.25■□□□□ 0.99
CLN3-227ENST00000567495 BLIDQ8IZY5 108 aa21.25■□□□□ 0.99
CLN3-227ENST00000567495 RASGRP4Q8TDF6 673 aa21.25■□□□□ 0.99
CLN3-227ENST00000567495 WASF1Q92558 559 aa21.25■□□□□ 0.99
CLN3-227ENST00000567495 WNT8BQ93098 351 aa21.25■□□□□ 0.99
CLN3-227ENST00000567495 GUCD1Q96NT3 240 aa21.25■□□□□ 0.99
CLN3-227ENST00000567495 ZNF576Q9H609 170 aa21.25■□□□□ 0.99
CLN3-227ENST00000567495 ADAMTS3O15072 1205 aa21.24■□□□□ 0.99
CLN3-227ENST00000567495 NBNO60934 754 aa21.24■□□□□ 0.99
CLN3-227ENST00000567495 KCNJ6P48051 423 aa21.24■□□□□ 0.99
CLN3-227ENST00000567495 GRIK4Q16099 956 aa21.24■□□□□ 0.99
CLN3-227ENST00000567495 PRR16Q569H4 304 aa21.24■□□□□ 0.99
CLN3-227ENST00000567495 MIS18BP1Q6P0N0 1132 aa21.24■□□□□ 0.99
CLN3-227ENST00000567495 RSPH3Q86UC2 560 aa21.24■□□□□ 0.99
CLN3-227ENST00000567495 CDX2Q99626 313 aaPredicted RBP21.24■□□□□ 0.99
CLN3-227ENST00000567495 PCDHA11Q9Y5I1 949 aa21.24■□□□□ 0.99
CLN3-227ENST00000567495 MBLAC1A4D2B0 266 aaPredicted RBP21.23■□□□□ 0.99
CLN3-227ENST00000567495 DHX15O43143 795 aaKnown RBP21.23■□□□□ 0.99
CLN3-227ENST00000567495 MARK3P27448 753 aa21.23■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms