RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 ABHD14A-ACY1A0A1B0GW23 586 aa25.71■■□□□ 1.71
CLN3-215ENST00000565236 PSMA5P28066 241 aa25.71■■□□□ 1.71
CLN3-215ENST00000565236 ADGRE1Q14246 886 aa25.71■■□□□ 1.71
CLN3-215ENST00000565236 PPM1EQ8WY54 764 aa25.71■■□□□ 1.71
CLN3-215ENST00000565236 ZBED2Q9BTP6 218 aa25.71■■□□□ 1.71
CLN3-215ENST00000565236 EFCAB14O75071 495 aa25.7■■□□□ 1.7
CLN3-215ENST00000565236 MBTPS1Q14703 1052 aa25.7■■□□□ 1.7
CLN3-215ENST00000565236 MXRA8Q9BRK3 442 aa25.7■■□□□ 1.7
CLN3-215ENST00000565236 GSTTP1A0A1W2PQM5 241 aa25.69■■□□□ 1.7
CLN3-215ENST00000565236 TLL1O43897 1013 aa25.69■■□□□ 1.7
CLN3-215ENST00000565236 LGR5O75473 907 aa25.69■■□□□ 1.7
CLN3-215ENST00000565236 RPS6KB1P23443 525 aa25.69■■□□□ 1.7
CLN3-215ENST00000565236 ARHGAP4P98171 946 aa25.69■■□□□ 1.7
CLN3-215ENST00000565236 USP38Q8NB14 1042 aa25.69■■□□□ 1.7
CLN3-215ENST00000565236 PGBD1Q96JS3 809 aa25.69■■□□□ 1.7
CLN3-215ENST00000565236 KCNH7Q9NS40 1196 aa25.69■■□□□ 1.7
CLN3-215ENST00000565236 KAT6AQ92794 2004 aa25.69■■□□□ 1.7
CLN3-215ENST00000565236 NRCAMQ92823 1304 aa25.68■■□□□ 1.7
CLN3-215ENST00000565236 PFKFB3Q16875 520 aaPredicted RBP25.68■■□□□ 1.7
CLN3-215ENST00000565236 TCTN1Q2MV58 587 aa25.68■■□□□ 1.7
CLN3-215ENST00000565236 FBXL16Q8N461 479 aa25.68■■□□□ 1.7
CLN3-215ENST00000565236 GLG1Q92896 1179 aa25.68■■□□□ 1.7
CLN3-215ENST00000565236 ANO3Q9BYT9 981 aa25.68■■□□□ 1.7
CLN3-215ENST00000565236 CAND2O75155 1236 aa25.67■■□□□ 1.7
CLN3-215ENST00000565236 SCG2P13521 617 aa25.67■■□□□ 1.7
CLN3-215ENST00000565236 DEFB103AP81534 67 aa25.67■■□□□ 1.7
CLN3-215ENST00000565236 AP3B2Q13367 1082 aa25.67■■□□□ 1.7
CLN3-215ENST00000565236 CYP2W1Q8TAV3 490 aa25.67■■□□□ 1.7
CLN3-215ENST00000565236 LMBR1Q8WVP7 490 aa25.67■■□□□ 1.7
CLN3-215ENST00000565236 COL25A1Q9BXS0 654 aaPredicted RBP25.67■■□□□ 1.7
CLN3-215ENST00000565236 SMARCAD1Q9H4L7 1026 aa25.67■■□□□ 1.7
CLN3-215ENST00000565236 CERS4Q9HA82 394 aa25.67■■□□□ 1.7
CLN3-215ENST00000565236 JPH1Q9HDC5 661 aaPredicted RBP25.67■■□□□ 1.7
CLN3-215ENST00000565236 TMEM260Q9NX78 707 aa25.67■■□□□ 1.7
CLN3-215ENST00000565236 ERAP1Q9NZ08 941 aa25.67■■□□□ 1.7
CLN3-215ENST00000565236 CTSHP09668 335 aa25.66■■□□□ 1.7
CLN3-215ENST00000565236 ZNF76P36508 570 aa25.66■■□□□ 1.7
CLN3-215ENST00000565236 ADAM17P78536 824 aa25.66■■□□□ 1.7
CLN3-215ENST00000565236 TAP1Q03518 808 aa25.66■■□□□ 1.7
CLN3-215ENST00000565236 CCDC85BQ15834 202 aaPredicted RBP25.66■■□□□ 1.7
CLN3-215ENST00000565236 CEP55Q53EZ4 464 aa25.66■■□□□ 1.7
CLN3-215ENST00000565236 TMCO2Q7Z6W1 182 aaPredicted RBP25.66■■□□□ 1.7
CLN3-215ENST00000565236 DBF4BQ8NFT6 615 aa25.66■■□□□ 1.7
CLN3-215ENST00000565236 SDF4Q9BRK5 362 aa25.66■■□□□ 1.7
CLN3-215ENST00000565236 SLC9A2Q9UBY0 812 aa25.66■■□□□ 1.7
CLN3-215ENST00000565236 MARK3P27448 753 aa25.65■■□□□ 1.7
CLN3-215ENST00000565236 SREBF1P36956 1147 aa25.65■■□□□ 1.7
CLN3-215ENST00000565236 CLK2P49760 499 aaKnown RBP25.65■■□□□ 1.7
CLN3-215ENST00000565236 AKAP17AQ02040 695 aaKnown RBP25.65■■□□□ 1.7
CLN3-215ENST00000565236 CCDC12Q8WUD4 166 aaPredicted RBP25.65■■□□□ 1.7
CLN3-215ENST00000565236 AGXT2Q9BYV1 514 aa25.65■■□□□ 1.7
CLN3-215ENST00000565236 PRPF3O43395 683 aaKnown RBP25.64■■□□□ 1.7
CLN3-215ENST00000565236 EPB41L2O43491 1005 aaKnown RBP25.64■■□□□ 1.7
CLN3-215ENST00000565236 ARP10275 920 aa25.64■■□□□ 1.7
CLN3-215ENST00000565236 PPFIA1Q13136 1202 aa25.64■■□□□ 1.7
CLN3-215ENST00000565236 PLEKHG4Q58EX7 1191 aa25.64■■□□□ 1.7
CLN3-215ENST00000565236 JAKMIP3Q5VZ66 844 aa25.64■■□□□ 1.7
CLN3-215ENST00000565236 ARNTL2Q8WYA1 636 aa25.64■■□□□ 1.7
CLN3-215ENST00000565236 SEPT8Q92599 483 aa25.64■■□□□ 1.7
CLN3-215ENST00000565236 RAD9AQ99638 391 aa25.64■■□□□ 1.7
CLN3-215ENST00000565236 C6orf50Q9HD87 102 aa25.64■■□□□ 1.7
CLN3-215ENST00000565236 NFASCO94856 1347 aa25.63■■□□□ 1.69
CLN3-215ENST00000565236 RFXAPO00287 272 aa25.63■■□□□ 1.69
CLN3-215ENST00000565236 MEIS1O00470 390 aa25.63■■□□□ 1.69
CLN3-215ENST00000565236 GJB5O95377 273 aa25.63■■□□□ 1.69
CLN3-215ENST00000565236 AZI2Q9H6S1 392 aa25.63■■□□□ 1.69
CLN3-215ENST00000565236 TRANK1O15050 2925 aa25.63■■□□□ 1.69
CLN3-215ENST00000565236 PTPRSQ13332 1948 aa25.63■■□□□ 1.69
CLN3-215ENST00000565236 NID2Q14112 1375 aa25.62■■□□□ 1.69
CLN3-215ENST00000565236 ARHGEF15O94989 841 aa25.62■■□□□ 1.69
CLN3-215ENST00000565236 AMHP03971 560 aa25.62■■□□□ 1.69
CLN3-215ENST00000565236 GRIK4Q16099 956 aa25.62■■□□□ 1.69
CLN3-215ENST00000565236 MCTP2Q6DN12 878 aa25.62■■□□□ 1.69
CLN3-215ENST00000565236 FAM117BQ6P1L5 589 aa25.62■■□□□ 1.69
CLN3-215ENST00000565236 TAF2Q6P1X5 1199 aa25.62■■□□□ 1.69
CLN3-215ENST00000565236 RUFY3Q7L099 469 aa25.62■■□□□ 1.69
CLN3-215ENST00000565236 PHKBQ93100 1093 aa25.62■■□□□ 1.69
CLN3-215ENST00000565236 ZMYND12Q9H0C1 365 aa25.62■■□□□ 1.69
CLN3-215ENST00000565236 AGO4Q9HCK5 861 aaKnown RBP25.62■■□□□ 1.69
CLN3-215ENST00000565236 PRDM6Q9NQX0 595 aa25.62■■□□□ 1.69
CLN3-215ENST00000565236 ESYT2A0FGR8 921 aa25.61■■□□□ 1.69
CLN3-215ENST00000565236 LCHNA4D1U4 455 aa25.61■■□□□ 1.69
CLN3-215ENST00000565236 RBAK-RBAKDNI3L0D1 243 aa25.61■■□□□ 1.69
CLN3-215ENST00000565236 GTPBP6O43824 516 aaPredicted RBP25.61■■□□□ 1.69
CLN3-215ENST00000565236 PDIA3P30101 505 aaKnown RBP25.61■■□□□ 1.69
CLN3-215ENST00000565236 ACTR2P61160 394 aa25.61■■□□□ 1.69
CLN3-215ENST00000565236 PKN1Q16512 942 aa25.61■■□□□ 1.69
CLN3-215ENST00000565236 FAM26DQ5JW98 314 aa25.61■■□□□ 1.69
CLN3-215ENST00000565236 LIN28BQ6ZN17 250 aaKnown RBP eCLIP25.61■■□□□ 1.69
CLN3-215ENST00000565236 NIPA1Q7RTP0 329 aa25.61■■□□□ 1.69
CLN3-215ENST00000565236 RSPH3Q86UC2 560 aa25.61■■□□□ 1.69
CLN3-215ENST00000565236 MICALL1Q8N3F8 863 aa25.61■■□□□ 1.69
CLN3-215ENST00000565236 TNPO1Q92973 898 aaKnown RBP25.61■■□□□ 1.69
CLN3-215ENST00000565236 ZSWIM6Q9HCJ5 1215 aa25.61■■□□□ 1.69
CLN3-215ENST00000565236 TUBE1Q9UJT0 475 aa25.61■■□□□ 1.69
CLN3-215ENST00000565236 CYP46A1Q9Y6A2 500 aa25.61■■□□□ 1.69
CLN3-215ENST00000565236 RRN3P2A6NIE6 340 aa25.6■■□□□ 1.69
CLN3-215ENST00000565236 GNA11P29992 359 aa25.6■■□□□ 1.69
CLN3-215ENST00000565236 CCT2P78371 535 aaKnown RBP25.6■■□□□ 1.69
CLN3-215ENST00000565236 ITGB3BPQ13352 177 aaPredicted RBP25.6■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms