RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 TTC28Q96AY4 2481 aa19.74■□□□□ 0.75
VPS9D1-203ENST00000563798 DOCK5Q9H7D0 1870 aa19.73■□□□□ 0.75
VPS9D1-203ENST00000563798 GSTTP1A0A1W2PQM5 241 aa19.73■□□□□ 0.75
VPS9D1-203ENST00000563798 LCHNA4D1U4 455 aa19.73■□□□□ 0.75
VPS9D1-203ENST00000563798 RFXAPO00287 272 aa19.73■□□□□ 0.75
VPS9D1-203ENST00000563798 GTPBP6O43824 516 aaPredicted RBP19.73■□□□□ 0.75
VPS9D1-203ENST00000563798 FOSP01100 380 aaPredicted RBP19.73■□□□□ 0.75
VPS9D1-203ENST00000563798 TCF7P36402 384 aaPredicted RBP19.73■□□□□ 0.75
VPS9D1-203ENST00000563798 MRPS5P82675 430 aaKnown RBP19.73■□□□□ 0.75
VPS9D1-203ENST00000563798 UTP14CQ5TAP6 766 aaKnown RBP19.73■□□□□ 0.75
VPS9D1-203ENST00000563798 TYW1BQ6NUM6 668 aa19.73■□□□□ 0.75
VPS9D1-203ENST00000563798 TMCO2Q7Z6W1 182 aaPredicted RBP19.73■□□□□ 0.75
VPS9D1-203ENST00000563798 LMBR1Q8WVP7 490 aa19.73■□□□□ 0.75
VPS9D1-203ENST00000563798 ARNTL2Q8WYA1 636 aa19.73■□□□□ 0.75
VPS9D1-203ENST00000563798 ZBED2Q9BTP6 218 aa19.73■□□□□ 0.75
VPS9D1-203ENST00000563798 TSPYL2Q9H2G4 693 aaPredicted RBP19.73■□□□□ 0.75
VPS9D1-203ENST00000563798 EHMT1Q9H9B1 1298 aa19.73■□□□□ 0.75
VPS9D1-203ENST00000563798 CERS4Q9HA82 394 aa19.73■□□□□ 0.75
VPS9D1-203ENST00000563798 FAM217BQ9NTX9 383 aaPredicted RBP19.73■□□□□ 0.75
VPS9D1-203ENST00000563798 LPXNO60711 386 aa19.72■□□□□ 0.75
VPS9D1-203ENST00000563798 ERVK-21P61565 698 aa19.72■□□□□ 0.75
VPS9D1-203ENST00000563798 FBXL16Q8N461 479 aa19.72■□□□□ 0.75
VPS9D1-203ENST00000563798 TCEANC2Q96MN5 208 aa19.72■□□□□ 0.75
VPS9D1-203ENST00000563798 MXRA8Q9BRK3 442 aa19.72■□□□□ 0.75
VPS9D1-203ENST00000563798 GLT8D2Q9H1C3 349 aa19.72■□□□□ 0.75
VPS9D1-203ENST00000563798 BARHL2Q9NY43 387 aa19.72■□□□□ 0.75
VPS9D1-203ENST00000563798 LMCD1Q9NZU5 365 aa19.72■□□□□ 0.75
VPS9D1-203ENST00000563798 V9GY48 417 aaPredicted RBP19.72■□□□□ 0.75
VPS9D1-203ENST00000563798 AMHP03971 560 aa19.71■□□□□ 0.75
VPS9D1-203ENST00000563798 HTRA4P83105 476 aaPredicted RBP19.71■□□□□ 0.75
VPS9D1-203ENST00000563798 SP4Q02446 784 aa19.71■□□□□ 0.75
VPS9D1-203ENST00000563798 GRB10Q13322 594 aa19.71■□□□□ 0.75
VPS9D1-203ENST00000563798 TAF2Q6P1X5 1199 aa19.71■□□□□ 0.75
VPS9D1-203ENST00000563798 LIN28BQ6ZN17 250 aaKnown RBP eCLIP19.71■□□□□ 0.75
VPS9D1-203ENST00000563798 SEPT8Q92599 483 aa19.71■□□□□ 0.75
VPS9D1-203ENST00000563798 SMARCAD1Q9H4L7 1026 aa19.71■□□□□ 0.75
VPS9D1-203ENST00000563798 ERAP1Q9NZ08 941 aa19.71■□□□□ 0.75
VPS9D1-203ENST00000563798 INSL6Q9Y581 213 aa19.71■□□□□ 0.75
VPS9D1-203ENST00000563798 KLF18A0A0U1RQI7 1052 aa19.7■□□□□ 0.74
VPS9D1-203ENST00000563798 MBLAC1A4D2B0 266 aaPredicted RBP19.7■□□□□ 0.74
VPS9D1-203ENST00000563798 GOLGA8AA7E2F4 631 aa19.7■□□□□ 0.74
VPS9D1-203ENST00000563798 GOLGA8BA8MQT2 603 aa19.7■□□□□ 0.74
VPS9D1-203ENST00000563798 STXBP3O00186 592 aa19.7■□□□□ 0.74
VPS9D1-203ENST00000563798 CDC27P30260 824 aa19.7■□□□□ 0.74
VPS9D1-203ENST00000563798 CLK2P49760 499 aaKnown RBP19.7■□□□□ 0.74
VPS9D1-203ENST00000563798 NAPAP54920 295 aa19.7■□□□□ 0.74
VPS9D1-203ENST00000563798 ARHGAP4P98171 946 aa19.7■□□□□ 0.74
VPS9D1-203ENST00000563798 AP3B2Q13367 1082 aa19.7■□□□□ 0.74
VPS9D1-203ENST00000563798 SPRED2Q7Z698 418 aa19.7■□□□□ 0.74
VPS9D1-203ENST00000563798 SP7Q8TDD2 431 aaPredicted RBP19.7■□□□□ 0.74
VPS9D1-203ENST00000563798 APBB2Q92870 758 aa19.7■□□□□ 0.74
VPS9D1-203ENST00000563798 TGS1Q96RS0 853 aaKnown RBP19.7■□□□□ 0.74
VPS9D1-203ENST00000563798 OSBPL7Q9BZF2 842 aa19.7■□□□□ 0.74
VPS9D1-203ENST00000563798 KCNH7Q9NS40 1196 aa19.7■□□□□ 0.74
VPS9D1-203ENST00000563798 NFASCO94856 1347 aa19.7■□□□□ 0.74
VPS9D1-203ENST00000563798 REV3LO60673 3130 aa19.69■□□□□ 0.74
VPS9D1-203ENST00000563798 LINC01553A4QN01 128 aa19.69■□□□□ 0.74
VPS9D1-203ENST00000563798 HSPA4P34932 840 aa19.69■□□□□ 0.74
VPS9D1-203ENST00000563798 ADCY7P51828 1080 aa19.69■□□□□ 0.74
VPS9D1-203ENST00000563798 AGXT2Q9BYV1 514 aa19.69■□□□□ 0.74
VPS9D1-203ENST00000563798 JPH1Q9HDC5 661 aaPredicted RBP19.69■□□□□ 0.74
VPS9D1-203ENST00000563798 NID2Q14112 1375 aa19.69■□□□□ 0.74
VPS9D1-203ENST00000563798 PRRC2BQ5JSZ5 2229 aaKnown RBP19.68■□□□□ 0.74
VPS9D1-203ENST00000563798 MICAL3Q7RTP6 2002 aa19.68■□□□□ 0.74
VPS9D1-203ENST00000563798 CCDC196A0A1B0GTZ2 297 aa19.68■□□□□ 0.74
VPS9D1-203ENST00000563798 SMCO2A6NFE2 343 aa19.68■□□□□ 0.74
VPS9D1-203ENST00000563798 MEIS1O00470 390 aa19.68■□□□□ 0.74
VPS9D1-203ENST00000563798 CHRNA1P02708 482 aa19.68■□□□□ 0.74
VPS9D1-203ENST00000563798 RPLP2P05387 115 aaKnown RBP19.68■□□□□ 0.74
VPS9D1-203ENST00000563798 SREBF1P36956 1147 aa19.68■□□□□ 0.74
VPS9D1-203ENST00000563798 PPFIA1Q13136 1202 aa19.68■□□□□ 0.74
VPS9D1-203ENST00000563798 CEP55Q53EZ4 464 aa19.68■□□□□ 0.74
VPS9D1-203ENST00000563798 MARCH8Q5T0T0 291 aa19.68■□□□□ 0.74
VPS9D1-203ENST00000563798 NIPA1Q7RTP0 329 aa19.68■□□□□ 0.74
VPS9D1-203ENST00000563798 CYP2W1Q8TAV3 490 aa19.68■□□□□ 0.74
VPS9D1-203ENST00000563798 TOP1MTQ969P6 601 aa19.68■□□□□ 0.74
VPS9D1-203ENST00000563798 PCYT2Q99447 389 aa19.68■□□□□ 0.74
VPS9D1-203ENST00000563798 ANO3Q9BYT9 981 aa19.68■□□□□ 0.74
VPS9D1-203ENST00000563798 SUGCTQ9HAC7 445 aa19.68■□□□□ 0.74
VPS9D1-203ENST00000563798 SLC9A2Q9UBY0 812 aa19.68■□□□□ 0.74
VPS9D1-203ENST00000563798 COG5Q9UP83 839 aa19.68■□□□□ 0.74
VPS9D1-203ENST00000563798 COL4A6Q14031 1691 aa19.68■□□□□ 0.74
VPS9D1-203ENST00000563798 LOC101059915A0A1B0GWI6 518 aaPredicted RBP19.67■□□□□ 0.74
VPS9D1-203ENST00000563798 ESYT2A0FGR8 921 aa19.67■□□□□ 0.74
VPS9D1-203ENST00000563798 CTSHP09668 335 aa19.67■□□□□ 0.74
VPS9D1-203ENST00000563798 MGAT3Q09327 533 aa19.67■□□□□ 0.74
VPS9D1-203ENST00000563798 GRIK4Q16099 956 aa19.67■□□□□ 0.74
VPS9D1-203ENST00000563798 PFKFB3Q16875 520 aaPredicted RBP19.67■□□□□ 0.74
VPS9D1-203ENST00000563798 AAK1Q2M2I8 961 aa19.67■□□□□ 0.74
VPS9D1-203ENST00000563798 MICALL1Q8N3F8 863 aa19.67■□□□□ 0.74
VPS9D1-203ENST00000563798 CRYGNQ8WXF5 182 aa19.67■□□□□ 0.74
VPS9D1-203ENST00000563798 GLG1Q92896 1179 aa19.67■□□□□ 0.74
VPS9D1-203ENST00000563798 SNX14Q9Y5W7 946 aa19.67■□□□□ 0.74
VPS9D1-203ENST00000563798 RRN3P2A6NIE6 340 aa19.66■□□□□ 0.74
VPS9D1-203ENST00000563798 TNFRSF10AO00220 468 aa19.66■□□□□ 0.74
VPS9D1-203ENST00000563798 ATG7O95352 703 aa19.66■□□□□ 0.74
VPS9D1-203ENST00000563798 ARP10275 920 aa19.66■□□□□ 0.74
VPS9D1-203ENST00000563798 BMP1P13497 986 aa19.66■□□□□ 0.74
VPS9D1-203ENST00000563798 ADD1P35611 737 aaKnown RBP19.66■□□□□ 0.74
VPS9D1-203ENST00000563798 KRT40Q6A162 431 aa19.66■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms