RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 GALNT5Q7Z7M9 940 aa6.09□□□□□ -1.43
VPS35P1-201ENST00000563400 ZNF227Q86WZ6 799 aa6.09□□□□□ -1.43
VPS35P1-201ENST00000563400 DEPTORQ8TB45 409 aa6.09□□□□□ -1.43
VPS35P1-201ENST00000563400 TRIM63Q969Q1 353 aa6.09□□□□□ -1.43
VPS35P1-201ENST00000563400 BARD1Q99728 777 aaKnown RBP6.09□□□□□ -1.43
VPS35P1-201ENST00000563400 SEZ6LQ9BYH1 1024 aa6.09□□□□□ -1.43
VPS35P1-201ENST00000563400 IGFLR1Q9H665 355 aa6.09□□□□□ -1.43
VPS35P1-201ENST00000563400 CD248Q9HCU0 757 aa6.09□□□□□ -1.43
VPS35P1-201ENST00000563400 EMC7Q9NPA0 242 aa6.09□□□□□ -1.43
VPS35P1-201ENST00000563400 DISC1Q9NRI5 854 aa6.09□□□□□ -1.43
VPS35P1-201ENST00000563400 SPTLC3Q9NUV7 552 aa6.09□□□□□ -1.43
VPS35P1-201ENST00000563400 CRYL1Q9Y2S2 319 aa6.09□□□□□ -1.43
VPS35P1-201ENST00000563400 EIF3AQ14152 1382 aaKnown RBP6.09□□□□□ -1.43
VPS35P1-201ENST00000563400 SCAF11Q99590 1463 aaKnown RBP6.09□□□□□ -1.43
VPS35P1-201ENST00000563400 C3P01024 1663 aa6.09□□□□□ -1.43
VPS35P1-201ENST00000563400 PRR36Q9H6K5 1346 aa6.09□□□□□ -1.43
VPS35P1-201ENST00000563400 ZBED1O96006 694 aa6.09□□□□□ -1.44
VPS35P1-201ENST00000563400 POLR2BP30876 1174 aaKnown RBP6.09□□□□□ -1.44
VPS35P1-201ENST00000563400 DSG1Q02413 1049 aa6.09□□□□□ -1.44
VPS35P1-201ENST00000563400 GPAT2Q6NUI2 795 aa6.09□□□□□ -1.44
VPS35P1-201ENST00000563400 ZCCHC8Q6NZY4 707 aaKnown RBP6.09□□□□□ -1.44
VPS35P1-201ENST00000563400 SULF2Q8IWU5 870 aa6.09□□□□□ -1.44
VPS35P1-201ENST00000563400 NKAIN3Q8N8D7 197 aa6.09□□□□□ -1.44
VPS35P1-201ENST00000563400 CLRN3Q8NCR9 226 aa6.09□□□□□ -1.44
VPS35P1-201ENST00000563400 GOLGA1Q92805 767 aa6.09□□□□□ -1.44
VPS35P1-201ENST00000563400 HVCN1Q96D96 273 aa6.09□□□□□ -1.44
VPS35P1-201ENST00000563400 MAGEB10Q96LZ2 347 aaPredicted RBP6.09□□□□□ -1.44
VPS35P1-201ENST00000563400 RIPOR3Q96MK2 946 aa6.09□□□□□ -1.44
VPS35P1-201ENST00000563400 RNF38Q9H0F5 515 aa6.09□□□□□ -1.44
VPS35P1-201ENST00000563400 AGO4Q9HCK5 861 aaKnown RBP6.09□□□□□ -1.44
VPS35P1-201ENST00000563400 VPS45Q9NRW7 570 aa6.09□□□□□ -1.44
VPS35P1-201ENST00000563400 RTEL1Q9NZ71 1219 aa6.09□□□□□ -1.44
VPS35P1-201ENST00000563400 GMIPQ9P107 970 aa6.09□□□□□ -1.44
VPS35P1-201ENST00000563400 POGKQ9P215 609 aa6.09□□□□□ -1.44
VPS35P1-201ENST00000563400 PDP2Q9P2J9 529 aa6.09□□□□□ -1.44
VPS35P1-201ENST00000563400 REV1Q9UBZ9 1251 aa6.09□□□□□ -1.44
VPS35P1-201ENST00000563400 ACAD8Q9UKU7 415 aa6.09□□□□□ -1.44
VPS35P1-201ENST00000563400 SAMM50Q9Y512 469 aa6.09□□□□□ -1.44
VPS35P1-201ENST00000563400 PLEKHG1Q9ULL1 1385 aa6.09□□□□□ -1.44
VPS35P1-201ENST00000563400 CEP170BQ9Y4F5 1589 aaPredicted RBP6.08□□□□□ -1.44
VPS35P1-201ENST00000563400 RIMS2Q9UQ26 1411 aa6.08□□□□□ -1.44
VPS35P1-201ENST00000563400 NCOA3Q9Y6Q9 1424 aa6.08□□□□□ -1.44
VPS35P1-201ENST00000563400 TRPM2O94759 1503 aa6.08□□□□□ -1.44
VPS35P1-201ENST00000563400 RRN3P2A6NIE6 340 aa6.08□□□□□ -1.44
VPS35P1-201ENST00000563400 TOR1BO14657 336 aa6.08□□□□□ -1.44
VPS35P1-201ENST00000563400 TNFRSF10CO14798 259 aa6.08□□□□□ -1.44
VPS35P1-201ENST00000563400 EFCAB14O75071 495 aa6.08□□□□□ -1.44
VPS35P1-201ENST00000563400 TIPRLO75663 272 aa6.08□□□□□ -1.44
VPS35P1-201ENST00000563400 CNOT4O95628 575 aaKnown RBP6.08□□□□□ -1.44
VPS35P1-201ENST00000563400 IGHDP01880 384 aa6.08□□□□□ -1.44
VPS35P1-201ENST00000563400 TP53P04637 393 aaPredicted RBP6.08□□□□□ -1.44
VPS35P1-201ENST00000563400 EPHX1P07099 455 aa6.08□□□□□ -1.44
VPS35P1-201ENST00000563400 NFKB1P19838 968 aa6.08□□□□□ -1.44
VPS35P1-201ENST00000563400 ABCB4P21439 1286 aa6.08□□□□□ -1.44
VPS35P1-201ENST00000563400 FXR1P51114 621 aaKnown RBP eCLIP6.08□□□□□ -1.44
VPS35P1-201ENST00000563400 HSPA2P54652 639 aa6.08□□□□□ -1.44
VPS35P1-201ENST00000563400 PPFIA1Q13136 1202 aa6.08□□□□□ -1.44
VPS35P1-201ENST00000563400 PRKG2Q13237 762 aa6.08□□□□□ -1.44
VPS35P1-201ENST00000563400 SLC45A4Q5BKX6 768 aa6.08□□□□□ -1.44
VPS35P1-201ENST00000563400 RPS26P11Q5JNZ5 115 aaPredicted RBP6.08□□□□□ -1.44
VPS35P1-201ENST00000563400 DIEXFQ68CQ4 756 aaKnown RBP6.08□□□□□ -1.44
VPS35P1-201ENST00000563400 FAAH2Q6GMR7 532 aa6.08□□□□□ -1.44
VPS35P1-201ENST00000563400 CYP26C1Q6V0L0 522 aa6.08□□□□□ -1.44
VPS35P1-201ENST00000563400 OVCH2Q7RTZ1 564 aa6.08□□□□□ -1.44
VPS35P1-201ENST00000563400 PPFIBP1Q86W92 1011 aa6.08□□□□□ -1.44
VPS35P1-201ENST00000563400 HSCBQ8IWL3 235 aa6.08□□□□□ -1.44
VPS35P1-201ENST00000563400 PPP1R35Q8TAP8 253 aa6.08□□□□□ -1.44
VPS35P1-201ENST00000563400 NUP133Q8WUM0 1156 aa6.08□□□□□ -1.44
VPS35P1-201ENST00000563400 ATRIPQ8WXE1 791 aa6.08□□□□□ -1.44
VPS35P1-201ENST00000563400 DIO2Q92813 273 aa6.08□□□□□ -1.44
VPS35P1-201ENST00000563400 KIAA1191Q96A73 305 aa6.08□□□□□ -1.44
VPS35P1-201ENST00000563400 MYCBPQ99417 103 aaPredicted RBP6.08□□□□□ -1.44
VPS35P1-201ENST00000563400 VPS11Q9H270 941 aa6.08□□□□□ -1.44
VPS35P1-201ENST00000563400 TBC1D22BQ9NU19 505 aa6.08□□□□□ -1.44
VPS35P1-201ENST00000563400 GPRC5BQ9NZH0 403 aa6.08□□□□□ -1.44
VPS35P1-201ENST00000563400 SAMD15Q9P1V8 674 aa6.08□□□□□ -1.44
VPS35P1-201ENST00000563400 LRCH1Q9Y2L9 728 aa6.08□□□□□ -1.44
VPS35P1-201ENST00000563400 TRAF6Q9Y4K3 522 aa6.08□□□□□ -1.44
VPS35P1-201ENST00000563400 NEURL4Q96JN8 1562 aa6.08□□□□□ -1.44
VPS35P1-201ENST00000563400 NPHP4O75161 1426 aaPredicted RBP6.07□□□□□ -1.44
VPS35P1-201ENST00000563400 ITIH6Q6UXX5 1313 aa6.07□□□□□ -1.44
VPS35P1-201ENST00000563400 ANKRD34BA5PLL1 514 aa6.07□□□□□ -1.44
VPS35P1-201ENST00000563400 SYNDIG1LA6NDD5 238 aa6.07□□□□□ -1.44
VPS35P1-201ENST00000563400 RASA4BC9J798 803 aa6.07□□□□□ -1.44
VPS35P1-201ENST00000563400 H3BRJ5 948 aa6.07□□□□□ -1.44
VPS35P1-201ENST00000563400 M0R082 166 aa6.07□□□□□ -1.44
VPS35P1-201ENST00000563400 NFKBIEO00221 500 aa6.07□□□□□ -1.44
VPS35P1-201ENST00000563400 RASA4O43374 803 aa6.07□□□□□ -1.44
VPS35P1-201ENST00000563400 DLX3O60479 287 aa6.07□□□□□ -1.44
VPS35P1-201ENST00000563400 H2AFYO75367 372 aaKnown RBP6.07□□□□□ -1.44
VPS35P1-201ENST00000563400 OFD1O75665 1012 aa6.07□□□□□ -1.44
VPS35P1-201ENST00000563400 GLRX3O76003 335 aaKnown RBP6.07□□□□□ -1.44
VPS35P1-201ENST00000563400 CRTAMO95727 393 aa6.07□□□□□ -1.44
VPS35P1-201ENST00000563400 HSP90AB1P08238 724 aaKnown RBP6.07□□□□□ -1.44
VPS35P1-201ENST00000563400 HOXC13P31276 330 aa6.07□□□□□ -1.44
VPS35P1-201ENST00000563400 ATICP31939 592 aa6.07□□□□□ -1.44
VPS35P1-201ENST00000563400 KRT20P35900 424 aa6.07□□□□□ -1.44
VPS35P1-201ENST00000563400 PPP2R3AQ06190 1150 aa6.07□□□□□ -1.44
VPS35P1-201ENST00000563400 WASHC5Q12768 1159 aa6.07□□□□□ -1.44
VPS35P1-201ENST00000563400 LRRC14Q15048 493 aa6.07□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms