RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 SDF4Q9BRK5 362 aa19.23■□□□□ 0.67
CLK3-210ENST00000563112 TM6SF1Q9BZW5 370 aa19.23■□□□□ 0.67
CLK3-210ENST00000563112 JPH1Q9HDC5 661 aaPredicted RBP19.23■□□□□ 0.67
CLK3-210ENST00000563112 SETD4Q9NVD3 440 aa19.23■□□□□ 0.67
CLK3-210ENST00000563112 TMEM260Q9NX78 707 aa19.23■□□□□ 0.67
CLK3-210ENST00000563112 YBX2Q9Y2T7 364 aaKnown RBP19.23■□□□□ 0.67
CLK3-210ENST00000563112 TELO2Q9Y4R8 837 aa19.23■□□□□ 0.67
CLK3-210ENST00000563112 KAT6AQ92794 2004 aa19.23■□□□□ 0.67
CLK3-210ENST00000563112 EMSYQ7Z589 1322 aa19.23■□□□□ 0.67
CLK3-210ENST00000563112 GBF1Q92538 1859 aa19.22■□□□□ 0.67
CLK3-210ENST00000563112 GSTTP1A0A1W2PQM5 241 aa19.22■□□□□ 0.67
CLK3-210ENST00000563112 ESYT2A0FGR8 921 aa19.22■□□□□ 0.67
CLK3-210ENST00000563112 NBNO60934 754 aa19.22■□□□□ 0.67
CLK3-210ENST00000563112 EFCAB14O75071 495 aa19.22■□□□□ 0.67
CLK3-210ENST00000563112 GNA11P29992 359 aa19.22■□□□□ 0.67
CLK3-210ENST00000563112 PDIA3P30101 505 aaKnown RBP19.22■□□□□ 0.67
CLK3-210ENST00000563112 SREBF1P36956 1147 aa19.22■□□□□ 0.67
CLK3-210ENST00000563112 CLK2P49760 499 aaKnown RBP19.22■□□□□ 0.67
CLK3-210ENST00000563112 EVCP57679 992 aa19.22■□□□□ 0.67
CLK3-210ENST00000563112 ARHGAP4P98171 946 aa19.22■□□□□ 0.67
CLK3-210ENST00000563112 IKBKEQ14164 716 aa19.22■□□□□ 0.67
CLK3-210ENST00000563112 JAKMIP3Q5VZ66 844 aa19.22■□□□□ 0.67
CLK3-210ENST00000563112 PPP2R2DQ66LE6 453 aa19.22■□□□□ 0.67
CLK3-210ENST00000563112 WNT8BQ93098 351 aa19.22■□□□□ 0.67
CLK3-210ENST00000563112 PHKBQ93100 1093 aa19.22■□□□□ 0.67
CLK3-210ENST00000563112 RNF26Q9BY78 433 aaPredicted RBP19.22■□□□□ 0.67
CLK3-210ENST00000563112 SMARCAD1Q9H4L7 1026 aa19.22■□□□□ 0.67
CLK3-210ENST00000563112 PRDM12Q9H4Q4 367 aa19.22■□□□□ 0.67
CLK3-210ENST00000563112 ERAP1Q9NZ08 941 aa19.22■□□□□ 0.67
CLK3-210ENST00000563112 SLC9A2Q9UBY0 812 aa19.22■□□□□ 0.67
CLK3-210ENST00000563112 NRCAMQ92823 1304 aa19.22■□□□□ 0.67
CLK3-210ENST00000563112 CHD9Q3L8U1 2897 aa19.21■□□□□ 0.67
CLK3-210ENST00000563112 ABHD14A-ACY1A0A1B0GW23 586 aa19.21■□□□□ 0.67
CLK3-210ENST00000563112 CAND2O75155 1236 aa19.21■□□□□ 0.67
CLK3-210ENST00000563112 IFNAR1P17181 557 aa19.21■□□□□ 0.67
CLK3-210ENST00000563112 CCT2P78371 535 aaKnown RBP19.21■□□□□ 0.67
CLK3-210ENST00000563112 GPNMBQ14956 572 aa19.21■□□□□ 0.67
CLK3-210ENST00000563112 HERC6Q8IVU3 1022 aa19.21■□□□□ 0.67
CLK3-210ENST00000563112 REXO1Q8N1G1 1221 aaKnown RBP19.21■□□□□ 0.67
CLK3-210ENST00000563112 CCDC148Q8NFR7 591 aa19.21■□□□□ 0.67
CLK3-210ENST00000563112 CYP2W1Q8TAV3 490 aa19.21■□□□□ 0.67
CLK3-210ENST00000563112 BICD2Q8TD16 824 aa19.21■□□□□ 0.67
CLK3-210ENST00000563112 TNPO1Q92973 898 aaKnown RBP19.21■□□□□ 0.67
CLK3-210ENST00000563112 SLC26A6Q9BXS9 759 aa19.21■□□□□ 0.67
CLK3-210ENST00000563112 ZMYND12Q9H0C1 365 aa19.21■□□□□ 0.67
CLK3-210ENST00000563112 AZI2Q9H6S1 392 aa19.21■□□□□ 0.67
CLK3-210ENST00000563112 NFASCO94856 1347 aa19.21■□□□□ 0.67
CLK3-210ENST00000563112 MEIS1O00470 390 aa19.2■□□□□ 0.66
CLK3-210ENST00000563112 LGR5O75473 907 aa19.2■□□□□ 0.66
CLK3-210ENST00000563112 ARP10275 920 aa19.2■□□□□ 0.66
CLK3-210ENST00000563112 MYOGP15173 224 aa19.2■□□□□ 0.66
CLK3-210ENST00000563112 NTRK3Q16288 839 aa19.2■□□□□ 0.66
CLK3-210ENST00000563112 PKN1Q16512 942 aa19.2■□□□□ 0.66
CLK3-210ENST00000563112 TRAF7Q6Q0C0 670 aa19.2■□□□□ 0.66
CLK3-210ENST00000563112 NIPA1Q7RTP0 329 aa19.2■□□□□ 0.66
CLK3-210ENST00000563112 TRIM22Q8IYM9 498 aa19.2■□□□□ 0.66
CLK3-210ENST00000563112 LMBR1Q8WVP7 490 aa19.2■□□□□ 0.66
CLK3-210ENST00000563112 ZBED2Q9BTP6 218 aa19.2■□□□□ 0.66
CLK3-210ENST00000563112 CPLX1O14810 134 aa19.19■□□□□ 0.66
CLK3-210ENST00000563112 WDR5P61964 334 aaKnown RBP19.19■□□□□ 0.66
CLK3-210ENST00000563112 PPFIA1Q13136 1202 aa19.19■□□□□ 0.66
CLK3-210ENST00000563112 TOB2Q14106 344 aaPredicted RBP19.19■□□□□ 0.66
CLK3-210ENST00000563112 CPLX2Q6PUV4 134 aaKnown RBP19.19■□□□□ 0.66
CLK3-210ENST00000563112 PHF6Q8IWS0 365 aaKnown RBP eCLIP19.19■□□□□ 0.66
CLK3-210ENST00000563112 ZNF274Q96GC6 653 aaPredicted RBP19.19■□□□□ 0.66
CLK3-210ENST00000563112 NCOA5Q9HCD5 579 aaKnown RBP19.19■□□□□ 0.66
CLK3-210ENST00000563112 AGO4Q9HCK5 861 aaKnown RBP19.19■□□□□ 0.66
CLK3-210ENST00000563112 PDRG1Q9NUG6 133 aa19.19■□□□□ 0.66
CLK3-210ENST00000563112 CA3P07451 260 aa19.18■□□□□ 0.66
CLK3-210ENST00000563112 CYP3A4P08684 503 aa19.18■□□□□ 0.66
CLK3-210ENST00000563112 MARK3P27448 753 aa19.18■□□□□ 0.66
CLK3-210ENST00000563112 ADAM17P78536 824 aa19.18■□□□□ 0.66
CLK3-210ENST00000563112 SSRP1Q08945 709 aaKnown RBP19.18■□□□□ 0.66
CLK3-210ENST00000563112 MBTPS1Q14703 1052 aa19.18■□□□□ 0.66
CLK3-210ENST00000563112 TAF2Q6P1X5 1199 aa19.18■□□□□ 0.66
CLK3-210ENST00000563112 RSPH3Q86UC2 560 aa19.18■□□□□ 0.66
CLK3-210ENST00000563112 PLA2G4DQ86XP0 818 aa19.18■□□□□ 0.66
CLK3-210ENST00000563112 UPF3BQ9BZI7 483 aaKnown RBP19.18■□□□□ 0.66
CLK3-210ENST00000563112 CUL9Q8IWT3 2517 aa19.17■□□□□ 0.66
CLK3-210ENST00000563112 RRN3P2A6NIE6 340 aa19.17■□□□□ 0.66
CLK3-210ENST00000563112 TLL1O43897 1013 aa19.17■□□□□ 0.66
CLK3-210ENST00000563112 EIF5BO60841 1220 aaKnown RBP19.17■□□□□ 0.66
CLK3-210ENST00000563112 PPFIA3O75145 1194 aa19.17■□□□□ 0.66
CLK3-210ENST00000563112 CTSHP09668 335 aa19.17■□□□□ 0.66
CLK3-210ENST00000563112 ACTR2P61160 394 aa19.17■□□□□ 0.66
CLK3-210ENST00000563112 GRIK4Q16099 956 aa19.17■□□□□ 0.66
CLK3-210ENST00000563112 SEPT8Q92599 483 aa19.17■□□□□ 0.66
CLK3-210ENST00000563112 SH3GLB2Q9NR46 395 aa19.17■□□□□ 0.66
CLK3-210ENST00000563112 A0A0C4DFX4 3053 aa19.16■□□□□ 0.66
CLK3-210ENST00000563112 IGFBP4P22692 258 aa19.16■□□□□ 0.66
CLK3-210ENST00000563112 STAT5BP51692 787 aa19.16■□□□□ 0.66
CLK3-210ENST00000563112 ITGB3BPQ13352 177 aaPredicted RBP19.16■□□□□ 0.66
CLK3-210ENST00000563112 PLPPR4Q7Z2D5 763 aa19.16■□□□□ 0.66
CLK3-210ENST00000563112 DBF4BQ8NFT6 615 aa19.16■□□□□ 0.66
CLK3-210ENST00000563112 VPS54Q9P1Q0 977 aa19.16■□□□□ 0.66
CLK3-210ENST00000563112 TUBE1Q9UJT0 475 aa19.16■□□□□ 0.66
CLK3-210ENST00000563112 TRPC6Q9Y210 931 aa19.16■□□□□ 0.66
CLK3-210ENST00000563112 FAM86B1E9PN63 330 aa19.15■□□□□ 0.66
CLK3-210ENST00000563112 DLL1O00548 723 aa19.15■□□□□ 0.66
CLK3-210ENST00000563112 DEXIO95424 95 aa19.15■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms