RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 NEFHP12036 1026 aa14.6□□□□□ -0.07
CLK3-206ENST00000562078 KCNA3P22001 575 aa14.6□□□□□ -0.07
CLK3-206ENST00000562078 GUCY2FP51841 1108 aa14.6□□□□□ -0.07
CLK3-206ENST00000562078 USP4Q13107 963 aa14.6□□□□□ -0.07
CLK3-206ENST00000562078 CUL4BQ13620 913 aa14.6□□□□□ -0.07
CLK3-206ENST00000562078 KRT31Q15323 416 aa14.6□□□□□ -0.07
CLK3-206ENST00000562078 PPP4R3AQ6IN85 833 aa14.6□□□□□ -0.07
CLK3-206ENST00000562078 CRELD2Q6UXH1 353 aaPredicted RBP14.6□□□□□ -0.07
CLK3-206ENST00000562078 PNMA1Q8ND90 353 aa14.6□□□□□ -0.07
CLK3-206ENST00000562078 SUPT20HQ8NEM7 779 aa14.6□□□□□ -0.07
CLK3-206ENST00000562078 AGAP11Q8TF27 550 aa14.6□□□□□ -0.07
CLK3-206ENST00000562078 L3MBTL3Q96JM7 780 aaPredicted RBP14.6□□□□□ -0.07
CLK3-206ENST00000562078 PAPOLBQ9NRJ5 636 aaKnown RBP14.6□□□□□ -0.07
CLK3-206ENST00000562078 NFU1Q9UMS0 254 aa14.6□□□□□ -0.07
CLK3-206ENST00000562078 SPDYE3A6NKU9 549 aa14.59□□□□□ -0.07
CLK3-206ENST00000562078 TSPY3P0CV98 308 aa14.59□□□□□ -0.07
CLK3-206ENST00000562078 TSPY8P0CW00 308 aa14.59□□□□□ -0.07
CLK3-206ENST00000562078 GNAT1P11488 350 aa14.59□□□□□ -0.07
CLK3-206ENST00000562078 PTPREP23469 700 aa14.59□□□□□ -0.07
CLK3-206ENST00000562078 CARSP49589 748 aaKnown RBP14.59□□□□□ -0.07
CLK3-206ENST00000562078 TGFB2P61812 414 aa14.59□□□□□ -0.07
CLK3-206ENST00000562078 AOC3Q16853 763 aa14.59□□□□□ -0.07
CLK3-206ENST00000562078 TRIML1Q8N9V2 468 aa14.59□□□□□ -0.07
CLK3-206ENST00000562078 PANK4Q9NVE7 773 aa14.59□□□□□ -0.07
CLK3-206ENST00000562078 SLC5A4Q9NY91 659 aa14.59□□□□□ -0.07
CLK3-206ENST00000562078 SNED1Q8TER0 1413 aa14.59□□□□□ -0.07
CLK3-206ENST00000562078 GPR75-ASB3A0A0A6YYF3 556 aa14.59□□□□□ -0.07
CLK3-206ENST00000562078 ZSCAN5CA6NGD5 496 aaPredicted RBP14.59□□□□□ -0.07
CLK3-206ENST00000562078 PES1O00541 588 aaKnown RBP14.59□□□□□ -0.07
CLK3-206ENST00000562078 PPIP5K2O43314 1243 aa14.59□□□□□ -0.07
CLK3-206ENST00000562078 SCG2P13521 617 aa14.59□□□□□ -0.07
CLK3-206ENST00000562078 CXCR5P32302 372 aa14.59□□□□□ -0.07
CLK3-206ENST00000562078 ABL2P42684 1182 aa14.59□□□□□ -0.07
CLK3-206ENST00000562078 BLMHQ13867 455 aa14.59□□□□□ -0.07
CLK3-206ENST00000562078 NPY5RQ15761 445 aa14.59□□□□□ -0.07
CLK3-206ENST00000562078 GLE1Q53GS7 698 aaKnown RBP14.59□□□□□ -0.07
CLK3-206ENST00000562078 OSBPL9Q96SU4 736 aa14.59□□□□□ -0.07
CLK3-206ENST00000562078 EPAS1Q99814 870 aa14.59□□□□□ -0.07
CLK3-206ENST00000562078 TAB2Q9NYJ8 693 aa14.59□□□□□ -0.07
CLK3-206ENST00000562078 CEP131Q9UPN4 1083 aa14.59□□□□□ -0.07
CLK3-206ENST00000562078 TRIM75PA6NK02 468 aa14.58□□□□□ -0.07
CLK3-206ENST00000562078 F8W031 263 aaPredicted RBP14.58□□□□□ -0.07
CLK3-206ENST00000562078 KRT86O43790 486 aa14.58□□□□□ -0.07
CLK3-206ENST00000562078 ECE2O60344 883 aa14.58□□□□□ -0.07
CLK3-206ENST00000562078 PYGBP11216 843 aa14.58□□□□□ -0.07
CLK3-206ENST00000562078 VEGFAP15692 232 aaPredicted RBP14.58□□□□□ -0.07
CLK3-206ENST00000562078 KIF5BP33176 963 aa14.58□□□□□ -0.07
CLK3-206ENST00000562078 RANBP1P43487 201 aa14.58□□□□□ -0.07
CLK3-206ENST00000562078 SF3A3Q12874 501 aaKnown RBP eCLIP14.58□□□□□ -0.072e-6■■■■■ 54.1
CLK3-206ENST00000562078 TMEM132AQ24JP5 1023 aa14.58□□□□□ -0.07
CLK3-206ENST00000562078 PODNQ7Z5L7 613 aa14.58□□□□□ -0.07
CLK3-206ENST00000562078 ELOA2Q8IYF1 753 aaPredicted RBP14.58□□□□□ -0.07
CLK3-206ENST00000562078 B4GALNT2Q8NHY0 566 aa14.58□□□□□ -0.07
CLK3-206ENST00000562078 SMCR8Q8TEV9 937 aaPredicted RBP14.58□□□□□ -0.07
CLK3-206ENST00000562078 IFT81Q8WYA0 676 aa14.58□□□□□ -0.07
CLK3-206ENST00000562078 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP14.58□□□□□ -0.07
CLK3-206ENST00000562078 PIM2Q9P1W9 311 aa14.58□□□□□ -0.07
CLK3-206ENST00000562078 MTMR7Q9Y216 660 aa14.58□□□□□ -0.07
CLK3-206ENST00000562078 FLT1P17948 1338 aa14.58□□□□□ -0.07
CLK3-206ENST00000562078 SCN9AQ15858 1988 aa14.58□□□□□ -0.08
CLK3-206ENST00000562078 BRCA1P38398 1863 aaKnown RBP14.58□□□□□ -0.08
CLK3-206ENST00000562078 A0A1B0GVG6 124 aa14.58□□□□□ -0.08
CLK3-206ENST00000562078 TTC26A0AVF1 554 aa14.58□□□□□ -0.08
CLK3-206ENST00000562078 A6NHS1 94 aa14.58□□□□□ -0.08
CLK3-206ENST00000562078 SRRM3A6NNA2 597 aaPredicted RBP14.58□□□□□ -0.08
CLK3-206ENST00000562078 PHF20L1A8MW92 1017 aa14.58□□□□□ -0.08
CLK3-206ENST00000562078 HMGB1P1B2RPK0 211 aaPredicted RBP14.58□□□□□ -0.08
CLK3-206ENST00000562078 WNT7AO00755 349 aa14.58□□□□□ -0.08
CLK3-206ENST00000562078 FAM163BP0C2L3 166 aa14.58□□□□□ -0.08
CLK3-206ENST00000562078 ATP4AP20648 1035 aa14.58□□□□□ -0.08
CLK3-206ENST00000562078 RASA1P20936 1047 aa14.58□□□□□ -0.08
CLK3-206ENST00000562078 USP49Q70CQ1 688 aa14.58□□□□□ -0.08
CLK3-206ENST00000562078 MAATS1Q7Z4T9 603 aa14.58□□□□□ -0.08
CLK3-206ENST00000562078 TBC1D1Q86TI0 1168 aaPredicted RBP14.58□□□□□ -0.08
CLK3-206ENST00000562078 DGKHQ86XP1 1220 aa14.58□□□□□ -0.08
CLK3-206ENST00000562078 MFN1Q8IWA4 741 aa14.58□□□□□ -0.08
CLK3-206ENST00000562078 ZNF444Q8N0Y2 327 aaPredicted RBP14.58□□□□□ -0.08
CLK3-206ENST00000562078 SNX12Q9UMY4 172 aa14.58□□□□□ -0.08
CLK3-206ENST00000562078 ANO9A1A5B4 782 aa14.57□□□□□ -0.08
CLK3-206ENST00000562078 VAV2P52735 878 aa14.57□□□□□ -0.08
CLK3-206ENST00000562078 DPYDQ12882 1025 aa14.57□□□□□ -0.08
CLK3-206ENST00000562078 WDR59Q6PJI9 974 aa14.57□□□□□ -0.08
CLK3-206ENST00000562078 SLF2Q8IX21 1173 aa14.57□□□□□ -0.08
CLK3-206ENST00000562078 RTKN2Q8IZC4 609 aa14.57□□□□□ -0.08
CLK3-206ENST00000562078 STAG2Q8N3U4 1231 aa14.57□□□□□ -0.08
CLK3-206ENST00000562078 RUBCNQ92622 972 aa14.57□□□□□ -0.08
CLK3-206ENST00000562078 TNFRSF25Q93038 417 aa14.57□□□□□ -0.08
CLK3-206ENST00000562078 TSC22D3Q99576 134 aa14.57□□□□□ -0.08
CLK3-206ENST00000562078 KDM4CQ9H3R0 1056 aa14.57□□□□□ -0.08
CLK3-206ENST00000562078 NOP53Q9NZM5 478 aaKnown RBP14.57□□□□□ -0.08
CLK3-206ENST00000562078 STX8Q9UNK0 236 aa14.57□□□□□ -0.08
CLK3-206ENST00000562078 MAP3K13O43283 966 aa14.57□□□□□ -0.08
CLK3-206ENST00000562078 ACTN4O43707 911 aaKnown RBP14.57□□□□□ -0.08
CLK3-206ENST00000562078 GLI1P08151 1106 aa14.57□□□□□ -0.08
CLK3-206ENST00000562078 PLCG2P16885 1265 aa14.57□□□□□ -0.08
CLK3-206ENST00000562078 AFMP43652 599 aa14.57□□□□□ -0.08
CLK3-206ENST00000562078 CTCFP49711 727 aaPredicted RBP14.57□□□□□ -0.08
CLK3-206ENST00000562078 RHBDL3P58872 404 aa14.57□□□□□ -0.08
CLK3-206ENST00000562078 PFKFB3Q16875 520 aaPredicted RBP14.57□□□□□ -0.08
CLK3-206ENST00000562078 CCDC63Q8NA47 563 aa14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms