RNA–Protein interactions for RNA: ENST00000560829.5

SNX1-211, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 1,869 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-211ENST00000560829 VSIG10LQ86VR7 867 aa14.37□□□□□ -0.11
SNX1-211ENST00000560829 CHST13Q8NET6 341 aa14.37□□□□□ -0.11
SNX1-211ENST00000560829 ANKRD20A12PQ8NF67 263 aa14.37□□□□□ -0.11
SNX1-211ENST00000560829 OTUD5Q96G74 571 aa14.37□□□□□ -0.11
SNX1-211ENST00000560829 DYDC2Q96IM9 177 aa14.37□□□□□ -0.11
SNX1-211ENST00000560829 TRIM47Q96LD4 638 aa14.37□□□□□ -0.11
SNX1-211ENST00000560829 TBC1D22BQ9NU19 505 aa14.37□□□□□ -0.11
SNX1-211ENST00000560829 OTOFQ9HC10 1997 aa14.37□□□□□ -0.11
SNX1-211ENST00000560829 RBBP6Q7Z6E9 1792 aaKnown RBP14.37□□□□□ -0.11
SNX1-211ENST00000560829 UNCXA6NJT0 531 aa14.36□□□□□ -0.11
SNX1-211ENST00000560829 MAFGO15525 162 aa14.36□□□□□ -0.11
SNX1-211ENST00000560829 PABPC4Q13310 644 aaKnown RBP eCLIP14.36□□□□□ -0.115e-6■□□□□ 10.8
SNX1-211ENST00000560829 ITGB3BPQ13352 177 aaPredicted RBP14.36□□□□□ -0.11
SNX1-211ENST00000560829 GIT2Q14161 759 aa14.36□□□□□ -0.11
SNX1-211ENST00000560829 LDLRAD1Q5T700 205 aa14.36□□□□□ -0.11
SNX1-211ENST00000560829 ANKRD40Q6AI12 368 aa14.36□□□□□ -0.11
SNX1-211ENST00000560829 MOB2Q70IA6 237 aa14.36□□□□□ -0.11
SNX1-211ENST00000560829 NSUN6Q8TEA1 469 aaKnown RBP14.36□□□□□ -0.11
SNX1-211ENST00000560829 SEMA6BQ9H3T3 888 aa14.36□□□□□ -0.11
SNX1-211ENST00000560829 A1CFQ9NQ94 594 aaKnown RBP14.36□□□□□ -0.11
SNX1-211ENST00000560829 SCN4AP35499 1836 aa14.36□□□□□ -0.11
SNX1-211ENST00000560829 CHMP2AO43633 222 aa14.35□□□□□ -0.11
SNX1-211ENST00000560829 NR3C2P08235 984 aa14.35□□□□□ -0.11
SNX1-211ENST00000560829 SFPQP23246 707 aaKnown RBP eCLIP14.35□□□□□ -0.11
SNX1-211ENST00000560829 CCND2P30279 289 aa14.35□□□□□ -0.11
SNX1-211ENST00000560829 COPB1P53618 953 aaKnown RBP14.35□□□□□ -0.11
SNX1-211ENST00000560829 LRRC63Q05C16 580 aa14.35□□□□□ -0.11
SNX1-211ENST00000560829 CTTNQ14247 550 aaKnown RBP14.35□□□□□ -0.11
SNX1-211ENST00000560829 NOLC1Q14978 699 aaKnown RBP eCLIP14.35□□□□□ -0.11
SNX1-211ENST00000560829 EAPPQ56P03 285 aaPredicted RBP14.35□□□□□ -0.11
SNX1-211ENST00000560829 RIOX2Q8IUF8 465 aa14.35□□□□□ -0.11
SNX1-211ENST00000560829 CSGALNACT2Q8N6G5 542 aa14.35□□□□□ -0.11
SNX1-211ENST00000560829 GPRASP2Q96D09 838 aa14.35□□□□□ -0.11
SNX1-211ENST00000560829 INPP4AQ96PE3 977 aaPredicted RBP14.35□□□□□ -0.11
SNX1-211ENST00000560829 NACC1Q96RE7 527 aa14.35□□□□□ -0.11
SNX1-211ENST00000560829 SRRTQ9BXP5 876 aaKnown RBP14.35□□□□□ -0.11
SNX1-211ENST00000560829 BHMT2Q9H2M3 363 aa14.35□□□□□ -0.11
SNX1-211ENST00000560829 FBXO40Q9UH90 709 aa14.35□□□□□ -0.11
SNX1-211ENST00000560829 AGTPBP1Q9UPW5 1226 aa14.35□□□□□ -0.11
SNX1-211ENST00000560829 LOC285556D6RIA3 1793 aa14.35□□□□□ -0.11
SNX1-211ENST00000560829 POLR2AP24928 1970 aaKnown RBP14.35□□□□□ -0.11
SNX1-211ENST00000560829 ITIH6Q6UXX5 1313 aa14.35□□□□□ -0.11
SNX1-211ENST00000560829 TEX33O43247 280 aa14.35□□□□□ -0.11
SNX1-211ENST00000560829 STAM2O75886 525 aa14.35□□□□□ -0.11
SNX1-211ENST00000560829 SKILP12757 684 aa14.35□□□□□ -0.11
SNX1-211ENST00000560829 MOGSQ13724 837 aa14.35□□□□□ -0.11
SNX1-211ENST00000560829 TTLL12Q14166 644 aaPredicted RBP14.35□□□□□ -0.11
SNX1-211ENST00000560829 MYOCDQ8IZQ8 938 aa14.35□□□□□ -0.11
SNX1-211ENST00000560829 PURBQ96QR8 312 aaKnown RBP14.35□□□□□ -0.11
SNX1-211ENST00000560829 A0A0G2JMZ2 1700 aa14.34□□□□□ -0.11
SNX1-211ENST00000560829 NPHP3-ACAD11A0A0J9YXS1 232 aa14.34□□□□□ -0.11
SNX1-211ENST00000560829 KIF20AO95235 890 aa14.34□□□□□ -0.11
SNX1-211ENST00000560829 KRT18P05783 430 aaKnown RBP14.34□□□□□ -0.11
SNX1-211ENST00000560829 MYCLP12524 364 aaPredicted RBP14.34□□□□□ -0.11
SNX1-211ENST00000560829 KCNJ6P48051 423 aa14.34□□□□□ -0.11
SNX1-211ENST00000560829 ZCWPW2Q504Y3 356 aa14.34□□□□□ -0.11
SNX1-211ENST00000560829 HERC4Q5GLZ8 1057 aaPredicted RBP14.34□□□□□ -0.11
SNX1-211ENST00000560829 GADL1Q6ZQY3 521 aa14.34□□□□□ -0.11
SNX1-211ENST00000560829 MIER3Q7Z3K6 550 aa14.34□□□□□ -0.11
SNX1-211ENST00000560829 FAM114A1Q8IWE2 563 aa14.34□□□□□ -0.11
SNX1-211ENST00000560829 TPH2Q8IWU9 490 aa14.34□□□□□ -0.11
SNX1-211ENST00000560829 REEP2Q9BRK0 252 aa14.34□□□□□ -0.11
SNX1-211ENST00000560829 TMX1Q9H3N1 280 aa14.34□□□□□ -0.11
SNX1-211ENST00000560829 KCND2Q9NZV8 630 aa14.34□□□□□ -0.11
SNX1-211ENST00000560829 BTBD7Q9P203 1132 aa14.34□□□□□ -0.11
SNX1-211ENST00000560829 N4BP3O15049 544 aa14.33□□□□□ -0.11
SNX1-211ENST00000560829 LYPLA2O95372 231 aa14.33□□□□□ -0.11
SNX1-211ENST00000560829 P4HBP07237 508 aaKnown RBP14.33□□□□□ -0.11
SNX1-211ENST00000560829 PLS1Q14651 629 aa14.33□□□□□ -0.11
SNX1-211ENST00000560829 RINT1Q6NUQ1 792 aa14.33□□□□□ -0.11
SNX1-211ENST00000560829 C1orf186Q6ZWK4 172 aa14.33□□□□□ -0.11
SNX1-211ENST00000560829 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.33□□□□□ -0.11
SNX1-211ENST00000560829 FASTKD5Q7L8L6 764 aaKnown RBP14.33□□□□□ -0.11
SNX1-211ENST00000560829 NLRX1Q86UT6 975 aa14.33□□□□□ -0.11
SNX1-211ENST00000560829 CCDC112Q8NEF3 446 aa14.33□□□□□ -0.11
SNX1-211ENST00000560829 DNERQ8NFT8 737 aa14.33□□□□□ -0.11
SNX1-211ENST00000560829 OPTNQ96CV9 577 aa14.33□□□□□ -0.11
SNX1-211ENST00000560829 LXNQ9BS40 222 aa14.33□□□□□ -0.11
SNX1-211ENST00000560829 KCND1Q9NSA2 647 aa14.33□□□□□ -0.11
SNX1-211ENST00000560829 WRAP73Q9P2S5 460 aaPredicted RBP14.33□□□□□ -0.11
SNX1-211ENST00000560829 PFASO15067 1338 aa14.33□□□□□ -0.12
SNX1-211ENST00000560829 OFD1O75665 1012 aa14.33□□□□□ -0.12
SNX1-211ENST00000560829 IRX3P78415 501 aaPredicted RBP14.33□□□□□ -0.12
SNX1-211ENST00000560829 KRT76Q01546 638 aa14.33□□□□□ -0.12
SNX1-211ENST00000560829 GLIS3Q8NEA6 775 aa14.33□□□□□ -0.12
SNX1-211ENST00000560829 RDM1Q8NG50 284 aa14.33□□□□□ -0.12
SNX1-211ENST00000560829 IWS1Q96ST2 819 aa14.33□□□□□ -0.12
SNX1-211ENST00000560829 RUSC1Q9BVN2 902 aa14.33□□□□□ -0.12
SNX1-211ENST00000560829 ASCC2Q9H1I8 757 aaPredicted RBP14.33□□□□□ -0.12
SNX1-211ENST00000560829 ZSWIM4Q9H7M6 989 aa14.33□□□□□ -0.12
SNX1-211ENST00000560829 TAB2Q9NYJ8 693 aa14.33□□□□□ -0.12
SNX1-211ENST00000560829 MAGEC2Q9UBF1 373 aaPredicted RBP14.33□□□□□ -0.12
SNX1-211ENST00000560829 TESPA1A2RU30 521 aaPredicted RBP14.32□□□□□ -0.12
SNX1-211ENST00000560829 NRDCO43847 1150 aa14.32□□□□□ -0.12
SNX1-211ENST00000560829 ATP9AO75110 1047 aa14.32□□□□□ -0.12
SNX1-211ENST00000560829 FGFR1OPO95684 399 aaKnown RBP14.32□□□□□ -0.12
SNX1-211ENST00000560829 GAP43P17677 238 aa14.32□□□□□ -0.12
SNX1-211ENST00000560829 SFNP31947 248 aa14.32□□□□□ -0.12
SNX1-211ENST00000560829 JAK3P52333 1124 aa14.32□□□□□ -0.12
SNX1-211ENST00000560829 HERVK_113P62684 666 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms