RNA–Protein interactions for RNA: ENST00000560435.1

SPG11-222, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 413 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-222	ENST00000560435	NANOS3	P60323	173 aa	Known RBP	4.96	□□□□□ -1.62
SPG11-222	ENST00000560435	DGCR2	P98153	550 aa		4.96	□□□□□ -1.62
SPG11-222	ENST00000560435	SKIDA1	Q1XH10	827 aa		4.96	□□□□□ -1.62
SPG11-222	ENST00000560435		Q6ZSN1	163 aa		4.96	□□□□□ -1.62
SPG11-222	ENST00000560435	POLN	Q7Z5Q5	900 aa		4.96	□□□□□ -1.62
SPG11-222	ENST00000560435	SLC6A20	Q9NP91	592 aa		4.96	□□□□□ -1.62
SPG11-222	ENST00000560435	NPFFR2	Q9Y5X5	522 aa		4.96	□□□□□ -1.62
SPG11-222	ENST00000560435	SLC30A1	Q9Y6M5	507 aa		4.96	□□□□□ -1.62
SPG11-222	ENST00000560435	CKM	P06732	381 aa		4.95	□□□□□ -1.62
SPG11-222	ENST00000560435	FAH	P16930	419 aa		4.95	□□□□□ -1.62
SPG11-222	ENST00000560435	KCNJ6	P48051	423 aa		4.95	□□□□□ -1.62
SPG11-222	ENST00000560435	RAC3	P60763	192 aa		4.95	□□□□□ -1.62
SPG11-222	ENST00000560435	GRIN1	Q05586	938 aa		4.95	□□□□□ -1.62
SPG11-222	ENST00000560435	SF1	Q15637	639 aa	Known RBP	4.95	□□□□□ -1.62
SPG11-222	ENST00000560435	DENND5A	Q6IQ26	1287 aa		4.95	□□□□□ -1.62
SPG11-222	ENST00000560435	STPG3	Q8N7X2	389 aa		4.95	□□□□□ -1.62
SPG11-222	ENST00000560435	CLEC4D	Q8WXI8	215 aa		4.95	□□□□□ -1.62
SPG11-222	ENST00000560435	C1orf159	Q96HA4	380 aa		4.95	□□□□□ -1.62
SPG11-222	ENST00000560435	PDGFD	Q9GZP0	370 aa	Predicted RBP	4.95	□□□□□ -1.62
SPG11-222	ENST00000560435	ARHGAP20	Q9P2F6	1191 aa		4.95	□□□□□ -1.62
SPG11-222	ENST00000560435		H0Y858	1186 aa		4.94	□□□□□ -1.62
SPG11-222	ENST00000560435	SLC27A2	O14975	620 aa		4.94	□□□□□ -1.62
SPG11-222	ENST00000560435	ZNF888	P0CJ79	500 aa	Predicted RBP	4.94	□□□□□ -1.62
SPG11-222	ENST00000560435	GLRB	P48167	497 aa		4.94	□□□□□ -1.62
SPG11-222	ENST00000560435	SV2C	Q496J9	727 aa		4.94	□□□□□ -1.62
SPG11-222	ENST00000560435	MAMDC4	Q6UXC1	1216 aa		4.94	□□□□□ -1.62
SPG11-222	ENST00000560435	C1orf210	Q8IVY1	113 aa		4.94	□□□□□ -1.62
SPG11-222	ENST00000560435	TMEM145	Q8NBT3	493 aa		4.94	□□□□□ -1.62
SPG11-222	ENST00000560435	PIP4K2C	Q8TBX8	421 aa		4.94	□□□□□ -1.62
SPG11-222	ENST00000560435	CACTIN	Q8WUQ7	758 aa	Known RBP	4.94	□□□□□ -1.62
SPG11-222	ENST00000560435	NEU4	Q8WWR8	484 aa	Predicted RBP	4.94	□□□□□ -1.62
SPG11-222	ENST00000560435	FAM89A	Q96GI7	184 aa		4.94	□□□□□ -1.62
SPG11-222	ENST00000560435	SEC16B	Q96JE7	1060 aa		4.94	□□□□□ -1.62
SPG11-222	ENST00000560435	CARD11	Q9BXL7	1154 aa		4.94	□□□□□ -1.62
SPG11-222	ENST00000560435	LRP2BP	Q9P2M1	347 aa		4.94	□□□□□ -1.62
SPG11-222	ENST00000560435	STRIP2	Q9ULQ0	834 aa		4.94	□□□□□ -1.62
SPG11-222	ENST00000560435	OAZ3	Q9UMX2	235 aa		4.94	□□□□□ -1.62
SPG11-222	ENST00000560435	PTPN22	Q9Y2R2	807 aa		4.94	□□□□□ -1.62
SPG11-222	ENST00000560435	SCAMP3	O14828	347 aa	Known RBP	4.93	□□□□□ -1.62
SPG11-222	ENST00000560435	ENO2	P09104	434 aa	Predicted RBP	4.93	□□□□□ -1.62
SPG11-222	ENST00000560435	C1S	P09871	688 aa		4.93	□□□□□ -1.62
SPG11-222	ENST00000560435	CR2	P20023	1033 aa		4.93	□□□□□ -1.62
SPG11-222	ENST00000560435	ACRV1	P26436	265 aa		4.93	□□□□□ -1.62
SPG11-222	ENST00000560435	PFKP	Q01813	784 aa		4.93	□□□□□ -1.62
SPG11-222	ENST00000560435	KRTAP15-1	Q3LI76	137 aa		4.93	□□□□□ -1.62
SPG11-222	ENST00000560435	PAN2	Q504Q3	1202 aa	Known RBP	4.93	□□□□□ -1.62
SPG11-222	ENST00000560435	SLC35F1	Q5T1Q4	408 aa		4.93	□□□□□ -1.62
SPG11-222	ENST00000560435	METTL16	Q86W50	562 aa	Known RBP	4.93	□□□□□ -1.62
SPG11-222	ENST00000560435	LDLRAD3	Q86YD5	345 aa		4.93	□□□□□ -1.62
SPG11-222	ENST00000560435	DNAJC10	Q8IXB1	793 aa		4.93	□□□□□ -1.62
SPG11-222	ENST00000560435	IL17D	Q8TAD2	202 aa		4.93	□□□□□ -1.62
SPG11-222	ENST00000560435	ZNF839	A8K0R7	811 aa		4.92	□□□□□ -1.62
SPG11-222	ENST00000560435	U2SURP	O15042	1029 aa	Known RBP	4.92	□□□□□ -1.62
SPG11-222	ENST00000560435	CUTA	O60888	179 aa		4.92	□□□□□ -1.62
SPG11-222	ENST00000560435	IL18BP	O95998	194 aa		4.92	□□□□□ -1.62
SPG11-222	ENST00000560435	DUSP8	Q13202	625 aa		4.92	□□□□□ -1.62
SPG11-222	ENST00000560435	TUSC3	Q13454	348 aa		4.92	□□□□□ -1.62
SPG11-222	ENST00000560435	CD276	Q5ZPR3	534 aa		4.92	□□□□□ -1.62
SPG11-222	ENST00000560435	UHMK1	Q8TAS1	419 aa	Known RBP	4.92	□□□□□ -1.62
SPG11-222	ENST00000560435	PLEKHG4B	Q96PX9	1271 aa		4.92	□□□□□ -1.62
SPG11-222	ENST00000560435	JAM3	Q9BX67	310 aa		4.92	□□□□□ -1.62
SPG11-222	ENST00000560435	NUB1	Q9Y5A7	615 aa		4.92	□□□□□ -1.62
SPG11-222	ENST00000560435	PCSK5	Q92824	1860 aa		4.92	□□□□□ -1.62
SPG11-222	ENST00000560435	SUSD5	O60279	629 aa		4.91	□□□□□ -1.62
SPG11-222	ENST00000560435	PPFIA2	O75334	1257 aa		4.91	□□□□□ -1.62
SPG11-222	ENST00000560435	RECK	O95980	971 aa		4.91	□□□□□ -1.62
SPG11-222	ENST00000560435	ADH4	P08319	380 aa		4.91	□□□□□ -1.62
SPG11-222	ENST00000560435	POLD1	P28340	1107 aa		4.91	□□□□□ -1.62
SPG11-222	ENST00000560435	TOP3A	Q13472	1001 aa	Predicted RBP	4.91	□□□□□ -1.62
SPG11-222	ENST00000560435	TUBA3C	Q13748	450 aa		4.91	□□□□□ -1.62
SPG11-222	ENST00000560435	RNF151	Q2KHN1	245 aa		4.91	□□□□□ -1.62
SPG11-222	ENST00000560435	ZMAT1	Q5H9K5	638 aa		4.91	□□□□□ -1.62
SPG11-222	ENST00000560435	TUBA3E	Q6PEY2	450 aa		4.91	□□□□□ -1.62
SPG11-222	ENST00000560435	C6orf15	Q6UXA7	325 aa	Predicted RBP	4.91	□□□□□ -1.62
SPG11-222	ENST00000560435	OTOP3	Q7RTS5	596 aa		4.91	□□□□□ -1.62
SPG11-222	ENST00000560435	MSL2	Q9HCI7	577 aa		4.91	□□□□□ -1.62
SPG11-222	ENST00000560435	GPR27	Q9NS67	375 aa		4.91	□□□□□ -1.62
SPG11-222	ENST00000560435	CDC14B	O60729	498 aa		4.9	□□□□□ -1.63
SPG11-222	ENST00000560435	CAPNS1	P04632	268 aa		4.9	□□□□□ -1.63
SPG11-222	ENST00000560435	FNDC7	Q5VTL7	733 aa		4.9	□□□□□ -1.63
SPG11-222	ENST00000560435	FAM178B	Q8IXR5	827 aa		4.9	□□□□□ -1.63
SPG11-222	ENST00000560435	RBM12B	Q8IXT5	1001 aa	Known RBP	4.9	□□□□□ -1.63
SPG11-222	ENST00000560435	ZNF483	Q8TF39	744 aa	Predicted RBP	4.9	□□□□□ -1.63
SPG11-222	ENST00000560435	ZG16B	Q96DA0	208 aa		4.9	□□□□□ -1.63
SPG11-222	ENST00000560435	ANAPC16	Q96DE5	110 aa		4.9	□□□□□ -1.63
SPG11-222	ENST00000560435	OR14A2	Q96R54	314 aa		4.9	□□□□□ -1.63
SPG11-222	ENST00000560435	DPYSL5	Q9BPU6	564 aa		4.9	□□□□□ -1.63
SPG11-222	ENST00000560435	TACO1	Q9BSH4	297 aa	Known RBP	4.9	□□□□□ -1.63
SPG11-222	ENST00000560435	EPB41L3	Q9Y2J2	1087 aa	Predicted RBP	4.9	□□□□□ -1.63
SPG11-222	ENST00000560435	LTF	P02788	710 aa		4.89	□□□□□ -1.63
SPG11-222	ENST00000560435	MAK	P20794	623 aa		4.89	□□□□□ -1.63
SPG11-222	ENST00000560435	RPS19	P39019	145 aa	Known RBP	4.89	□□□□□ -1.63
SPG11-222	ENST00000560435	MAP4K2	Q12851	820 aa		4.89	□□□□□ -1.63
SPG11-222	ENST00000560435	PNPLA5	Q7Z6Z6	429 aa	Predicted RBP	4.89	□□□□□ -1.63
SPG11-222	ENST00000560435	MRGPRG	Q86SM5	289 aa		4.89	□□□□□ -1.63
SPG11-222	ENST00000560435	ZNF808	Q8N4W9	903 aa	Predicted RBP	4.89	□□□□□ -1.63
SPG11-222	ENST00000560435	LARP4B	Q92615	738 aa	Known RBP	4.89	□□□□□ -1.63
SPG11-222	ENST00000560435	SCYL1	Q96KG9	808 aa		4.89	□□□□□ -1.63
SPG11-222	ENST00000560435	CRAMP1	Q96RY5	1269 aa		4.89	□□□□□ -1.63
SPG11-222	ENST00000560435	PLA2G12B	Q9BX93	195 aa		4.89	□□□□□ -1.63

Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms