RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 TCF7P36402 384 aaPredicted RBP24.61■■□□□ 1.53
SNX1-210ENST00000560260 SPIRE1Q08AE8 756 aa24.61■■□□□ 1.53
SNX1-210ENST00000560260 SEPT1Q8WYJ6 367 aa24.61■■□□□ 1.53
SNX1-210ENST00000560260 PCYT2Q99447 389 aa24.61■■□□□ 1.53
SNX1-210ENST00000560260 ZSCAN16Q9H4T2 348 aaPredicted RBP24.61■■□□□ 1.53
SNX1-210ENST00000560260 C11orf49Q9H6J7 331 aa24.61■■□□□ 1.53
SNX1-210ENST00000560260 CHMP2AO43633 222 aa24.6■■□□□ 1.53
SNX1-210ENST00000560260 ZEB2O60315 1214 aa24.6■■□□□ 1.53
SNX1-210ENST00000560260 OR52Z1P0C646 297 aa24.6■■□□□ 1.53
SNX1-210ENST00000560260 PSMC6P62333 389 aa24.6■■□□□ 1.53
SNX1-210ENST00000560260 KRT76Q01546 638 aa24.6■■□□□ 1.53
SNX1-210ENST00000560260 DGKDQ16760 1214 aa24.6■■□□□ 1.53
SNX1-210ENST00000560260 BRDTQ58F21 947 aaPredicted RBP24.6■■□□□ 1.53
SNX1-210ENST00000560260 ZNF746Q6NUN9 644 aaPredicted RBP24.6■■□□□ 1.53
SNX1-210ENST00000560260 PPP1R13LQ8WUF5 828 aa24.6■■□□□ 1.53
SNX1-210ENST00000560260 C16orf70Q9BSU1 422 aa24.6■■□□□ 1.53
SNX1-210ENST00000560260 POLR3EQ9NVU0 708 aa24.6■■□□□ 1.53
SNX1-210ENST00000560260 ATG7O95352 703 aa24.59■■□□□ 1.53
SNX1-210ENST00000560260 F2P00734 622 aa24.59■■□□□ 1.53
SNX1-210ENST00000560260 PDIA4P13667 645 aaKnown RBP24.59■■□□□ 1.53
SNX1-210ENST00000560260 PTGDRQ13258 359 aa24.59■■□□□ 1.53
SNX1-210ENST00000560260 UTP14CQ5TAP6 766 aaKnown RBP24.59■■□□□ 1.53
SNX1-210ENST00000560260 ABHD15Q6UXT9 468 aa24.59■■□□□ 1.53
SNX1-210ENST00000560260 SENP6Q9GZR1 1112 aaPredicted RBP24.59■■□□□ 1.53
SNX1-210ENST00000560260 GRIN2DO15399 1336 aa24.58■■□□□ 1.53
SNX1-210ENST00000560260 EML1O00423 815 aa24.58■■□□□ 1.52
SNX1-210ENST00000560260 PPFIA4O75335 1185 aa24.58■■□□□ 1.52
SNX1-210ENST00000560260 LGR5O75473 907 aa24.58■■□□□ 1.52
SNX1-210ENST00000560260 CAPN15O75808 1086 aa24.58■■□□□ 1.52
SNX1-210ENST00000560260 SUPT20HL2P0C7V6 817 aa24.58■■□□□ 1.52
SNX1-210ENST00000560260 TXKP42681 527 aa24.58■■□□□ 1.52
SNX1-210ENST00000560260 PPP2R5CQ13362 524 aa24.58■■□□□ 1.52
SNX1-210ENST00000560260 NECAB2Q7Z6G3 386 aa24.58■■□□□ 1.52
SNX1-210ENST00000560260 SLFN12Q8IYM2 578 aa24.58■■□□□ 1.52
SNX1-210ENST00000560260 MTG1Q9BT17 334 aaPredicted RBP24.58■■□□□ 1.52
SNX1-210ENST00000560260 CLIC4Q9Y696 253 aa24.58■■□□□ 1.52
SNX1-210ENST00000560260 ALPK3Q96L96 1907 aa24.58■■□□□ 1.52
SNX1-210ENST00000560260 IGKV6D-21A0A0A0MT36 114 aa24.57■■□□□ 1.52
SNX1-210ENST00000560260 MARCH6O60337 910 aa24.57■■□□□ 1.52
SNX1-210ENST00000560260 ATP2C1P98194 919 aaPredicted RBP24.57■■□□□ 1.52
SNX1-210ENST00000560260 CCDC60Q8IWA6 550 aaPredicted RBP24.57■■□□□ 1.52
SNX1-210ENST00000560260 USP28Q96RU2 1077 aa24.57■■□□□ 1.52
SNX1-210ENST00000560260 EMSYQ7Z589 1322 aa24.57■■□□□ 1.52
SNX1-210ENST00000560260 WDR81Q562E7 1941 aa24.56■■□□□ 1.52
SNX1-210ENST00000560260 WDR64B1ANS9 1081 aa24.56■■□□□ 1.52
SNX1-210ENST00000560260 HAS3O00219 553 aa24.56■■□□□ 1.52
SNX1-210ENST00000560260 KPNA6O60684 536 aa24.56■■□□□ 1.52
SNX1-210ENST00000560260 BAG4O95429 457 aaKnown RBP24.56■■□□□ 1.52
SNX1-210ENST00000560260 SF3A1Q15459 793 aaKnown RBP24.56■■□□□ 1.52
SNX1-210ENST00000560260 IL17AQ16552 155 aa24.56■■□□□ 1.52
SNX1-210ENST00000560260 FOXD4L6Q3SYB3 417 aaPredicted RBP24.56■■□□□ 1.52
SNX1-210ENST00000560260 FOXD4L3Q6VB84 417 aaPredicted RBP24.56■■□□□ 1.52
SNX1-210ENST00000560260 SMAP1Q8IYB5 467 aaPredicted RBP24.56■■□□□ 1.52
SNX1-210ENST00000560260 CHAMP1Q96JM3 812 aa24.56■■□□□ 1.52
SNX1-210ENST00000560260 GLT1D1Q96MS3 346 aa24.56■■□□□ 1.52
SNX1-210ENST00000560260 TTC12Q9H892 705 aaPredicted RBP24.56■■□□□ 1.52
SNX1-210ENST00000560260 STARD7Q9NQZ5 370 aa24.56■■□□□ 1.52
SNX1-210ENST00000560260 DISC1Q9NRI5 854 aa24.56■■□□□ 1.52
SNX1-210ENST00000560260 CABYRO75952 493 aa24.55■■□□□ 1.52
SNX1-210ENST00000560260 PSEN2P49810 448 aa24.55■■□□□ 1.52
SNX1-210ENST00000560260 ATN1P54259 1190 aaPredicted RBP24.55■■□□□ 1.52
SNX1-210ENST00000560260 PTPAQ15257 358 aa24.55■■□□□ 1.52
SNX1-210ENST00000560260 NCAPH2Q6IBW4 605 aa24.55■■□□□ 1.52
SNX1-210ENST00000560260 MIER3Q7Z3K6 550 aa24.55■■□□□ 1.52
SNX1-210ENST00000560260 TCEAL9Q9UHQ7 104 aa24.55■■□□□ 1.52
SNX1-210ENST00000560260 POTEMA6NI47 508 aa24.54■■□□□ 1.52
SNX1-210ENST00000560260 JAK3P52333 1124 aa24.54■■□□□ 1.52
SNX1-210ENST00000560260 MFSD10Q14728 455 aa24.54■■□□□ 1.52
SNX1-210ENST00000560260 UGCGQ16739 394 aa24.54■■□□□ 1.52
SNX1-210ENST00000560260 LRRC26Q2I0M4 334 aa24.54■■□□□ 1.52
SNX1-210ENST00000560260 MIS18BP1Q6P0N0 1132 aa24.54■■□□□ 1.52
SNX1-210ENST00000560260 DAXXQ9UER7 740 aaPredicted RBP24.54■■□□□ 1.52
SNX1-210ENST00000560260 PCDHA12Q9UN75 941 aa24.54■■□□□ 1.52
SNX1-210ENST00000560260 IGSF9BQ9UPX0 1349 aa24.54■■□□□ 1.52
SNX1-210ENST00000560260 PCDHA10Q9Y5I2 948 aa24.54■■□□□ 1.52
SNX1-210ENST00000560260 SFNP31947 248 aa24.53■■□□□ 1.52
SNX1-210ENST00000560260 CEBPZQ03701 1054 aaKnown RBP24.53■■□□□ 1.52
SNX1-210ENST00000560260 ITGA7Q13683 1181 aa24.53■■□□□ 1.52
SNX1-210ENST00000560260 SNX17Q15036 470 aa24.53■■□□□ 1.52
SNX1-210ENST00000560260 NBPF20Q3BBV1 942 aa24.53■■□□□ 1.52
SNX1-210ENST00000560260 SLC39A5Q6ZMH5 540 aa24.53■■□□□ 1.52
SNX1-210ENST00000560260 SLC43A3Q8NBI5 491 aa24.53■■□□□ 1.52
SNX1-210ENST00000560260 RDM1Q8NG50 284 aa24.53■■□□□ 1.52
SNX1-210ENST00000560260 SAMM50Q9Y512 469 aa24.53■■□□□ 1.52
SNX1-210ENST00000560260 A0A0U1RQG5 324 aaPredicted RBP24.52■■□□□ 1.52
SNX1-210ENST00000560260 H3BRB1 525 aa24.52■■□□□ 1.52
SNX1-210ENST00000560260 PSAPP07602 524 aa24.52■■□□□ 1.52
SNX1-210ENST00000560260 ATP4AP20648 1035 aa24.52■■□□□ 1.52
SNX1-210ENST00000560260 MARK3P27448 753 aa24.52■■□□□ 1.52
SNX1-210ENST00000560260 PRPHP41219 470 aa24.52■■□□□ 1.52
SNX1-210ENST00000560260 TECP42680 631 aa24.52■■□□□ 1.52
SNX1-210ENST00000560260 CHMP4BP1P59074 171 aa24.52■■□□□ 1.52
SNX1-210ENST00000560260 KIAA0753Q2KHM9 967 aa24.52■■□□□ 1.52
SNX1-210ENST00000560260 SWSAP1Q6NVH7 229 aa24.52■■□□□ 1.52
SNX1-210ENST00000560260 AFAP1L1Q8TED9 768 aa24.52■■□□□ 1.52
SNX1-210ENST00000560260 VTI1AQ96AJ9 217 aa24.52■■□□□ 1.52
SNX1-210ENST00000560260 TUT1Q9H6E5 874 aaKnown RBP24.52■■□□□ 1.52
SNX1-210ENST00000560260 GABBR1Q9UBS5 961 aa24.52■■□□□ 1.52
SNX1-210ENST00000560260 LAD1O00515 517 aa24.51■■□□□ 1.51
SNX1-210ENST00000560260 BACH1O14867 736 aa24.51■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms