RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 MIER3Q7Z3K6 550 aa11.36□□□□□ -0.59
USP3-216ENST00000559873 TNPO1Q92973 898 aaKnown RBP11.36□□□□□ -0.59
USP3-216ENST00000559873 C11orf49Q9H6J7 331 aa11.36□□□□□ -0.59
USP3-216ENST00000559873 PCDHA12Q9UN75 941 aa11.36□□□□□ -0.59
USP3-216ENST00000559873 PCDHB6Q9Y5E3 794 aa11.36□□□□□ -0.59
USP3-216ENST00000559873 PCDHA10Q9Y5I2 948 aa11.36□□□□□ -0.59
USP3-216ENST00000559873 STK24Q9Y6E0 443 aa11.36□□□□□ -0.59
USP3-216ENST00000559873 MROH7Q68CQ1 1323 aa11.35□□□□□ -0.59
USP3-216ENST00000559873 A0A0U1RQG5 324 aaPredicted RBP11.35□□□□□ -0.59
USP3-216ENST00000559873 A0A1W2PQ45 241 aaPredicted RBP11.35□□□□□ -0.59
USP3-216ENST00000559873 A0A1W2PQY0 241 aa11.35□□□□□ -0.59
USP3-216ENST00000559873 DHX15O43143 795 aaKnown RBP11.35□□□□□ -0.59
USP3-216ENST00000559873 DKC1O60832 514 aaKnown RBP eCLIP11.35□□□□□ -0.59
USP3-216ENST00000559873 F2P00734 622 aa11.35□□□□□ -0.59
USP3-216ENST00000559873 LGALS2P05162 132 aa11.35□□□□□ -0.59
USP3-216ENST00000559873 EN2P19622 333 aaPredicted RBP11.35□□□□□ -0.59
USP3-216ENST00000559873 TXKP42681 527 aa11.35□□□□□ -0.59
USP3-216ENST00000559873 SLC26A2P50443 739 aa11.35□□□□□ -0.59
USP3-216ENST00000559873 TOB1P50616 345 aaPredicted RBP11.35□□□□□ -0.59
USP3-216ENST00000559873 ATP2C1P98194 919 aaPredicted RBP11.35□□□□□ -0.59
USP3-216ENST00000559873 PURAQ00577 322 aaKnown RBP11.35□□□□□ -0.59
USP3-216ENST00000559873 PTGDRQ13258 359 aa11.35□□□□□ -0.59
USP3-216ENST00000559873 PPP2R5CQ13362 524 aa11.35□□□□□ -0.59
USP3-216ENST00000559873 UTP14CQ5TAP6 766 aaKnown RBP11.35□□□□□ -0.59
USP3-216ENST00000559873 ARL6IP4Q66PJ3 421 aaKnown RBP11.35□□□□□ -0.59
USP3-216ENST00000559873 HAUS3Q68CZ6 603 aa11.35□□□□□ -0.59
USP3-216ENST00000559873 ATL3Q6DD88 541 aa11.35□□□□□ -0.59
USP3-216ENST00000559873 CCSAPQ6IQ19 270 aaPredicted RBP11.35□□□□□ -0.59
USP3-216ENST00000559873 CXCL17Q6UXB2 119 aa11.35□□□□□ -0.59
USP3-216ENST00000559873 ERMNQ8TAM6 284 aa11.35□□□□□ -0.59
USP3-216ENST00000559873 NEK9Q8TD19 979 aa11.35□□□□□ -0.59
USP3-216ENST00000559873 HAS1Q92839 578 aa11.35□□□□□ -0.59
USP3-216ENST00000559873 GLG1Q92896 1179 aa11.35□□□□□ -0.59
USP3-216ENST00000559873 ATP6V0A1Q93050 837 aa11.35□□□□□ -0.59
USP3-216ENST00000559873 VTI1AQ96AJ9 217 aa11.35□□□□□ -0.59
USP3-216ENST00000559873 HTATIP2Q9BUP3 242 aa11.35□□□□□ -0.59
USP3-216ENST00000559873 SMARCAD1Q9H4L7 1026 aa11.35□□□□□ -0.59
USP3-216ENST00000559873 TTC12Q9H892 705 aaPredicted RBP11.35□□□□□ -0.59
USP3-216ENST00000559873 DISC1Q9NRI5 854 aa11.35□□□□□ -0.59
USP3-216ENST00000559873 SUPT20HL2P0C7V6 817 aa11.34□□□□□ -0.59
USP3-216ENST00000559873 ZNF286BP0CG31 522 aa11.34□□□□□ -0.59
USP3-216ENST00000559873 COL6A1P12109 1028 aa11.34□□□□□ -0.59
USP3-216ENST00000559873 PTGS1P23219 599 aa11.34□□□□□ -0.59
USP3-216ENST00000559873 NBR1Q14596 966 aa11.34□□□□□ -0.59
USP3-216ENST00000559873 SF3A1Q15459 793 aaKnown RBP11.34□□□□□ -0.59
USP3-216ENST00000559873 FOXD4L5Q5VV16 416 aaPredicted RBP11.34□□□□□ -0.59
USP3-216ENST00000559873 DTHD1Q6ZMT9 781 aa11.34□□□□□ -0.59
USP3-216ENST00000559873 FOXD4L4Q8WXT5 416 aaPredicted RBP11.34□□□□□ -0.59
USP3-216ENST00000559873 PAWRQ96IZ0 340 aaKnown RBP11.34□□□□□ -0.59
USP3-216ENST00000559873 FAM167AQ96KS9 214 aa11.34□□□□□ -0.59
USP3-216ENST00000559873 IPO9Q96P70 1041 aaKnown RBP11.34□□□□□ -0.59
USP3-216ENST00000559873 MTMR9Q96QG7 549 aa11.34□□□□□ -0.59
USP3-216ENST00000559873 UIMC1Q96RL1 719 aa11.34□□□□□ -0.59
USP3-216ENST00000559873 SENP6Q9GZR1 1112 aaPredicted RBP11.34□□□□□ -0.59
USP3-216ENST00000559873 UNC45AQ9H3U1 944 aa11.34□□□□□ -0.59
USP3-216ENST00000559873 ZNF302Q9NR11 478 aa11.34□□□□□ -0.59
USP3-216ENST00000559873 ERAP1Q9NZ08 941 aa11.34□□□□□ -0.59
USP3-216ENST00000559873 VAV3Q9UKW4 847 aa11.34□□□□□ -0.59
USP3-216ENST00000559873 CFAP45Q9UL16 551 aa11.34□□□□□ -0.59
USP3-216ENST00000559873 BRCA2P51587 3418 aa11.34□□□□□ -0.59
USP3-216ENST00000559873 GSTTP1A0A1W2PQM5 241 aa11.33□□□□□ -0.6
USP3-216ENST00000559873 H3BRB1 525 aa11.33□□□□□ -0.6
USP3-216ENST00000559873 WNT7AO00755 349 aa11.33□□□□□ -0.6
USP3-216ENST00000559873 LGR5O75473 907 aa11.33□□□□□ -0.6
USP3-216ENST00000559873 ATG7O95352 703 aa11.33□□□□□ -0.6
USP3-216ENST00000559873 CCNE2O96020 404 aa11.33□□□□□ -0.6
USP3-216ENST00000559873 FXR2P51116 673 aaKnown RBP eCLIP11.33□□□□□ -0.6
USP3-216ENST00000559873 STAT5BP51692 787 aa11.33□□□□□ -0.6
USP3-216ENST00000559873 KRT85P78386 507 aa11.33□□□□□ -0.6
USP3-216ENST00000559873 PTPN11Q06124 597 aaPredicted RBP11.33□□□□□ -0.6
USP3-216ENST00000559873 PKP1Q13835 747 aa11.33□□□□□ -0.6
USP3-216ENST00000559873 MFSD10Q14728 455 aa11.33□□□□□ -0.6
USP3-216ENST00000559873 STK38Q15208 465 aa11.33□□□□□ -0.6
USP3-216ENST00000559873 NCAPH2Q6IBW4 605 aa11.33□□□□□ -0.6
USP3-216ENST00000559873 NFRKBQ6P4R8 1299 aa11.33□□□□□ -0.6
USP3-216ENST00000559873 ABHD15Q6UXT9 468 aa11.33□□□□□ -0.6
USP3-216ENST00000559873 PLPPR4Q7Z2D5 763 aa11.33□□□□□ -0.6
USP3-216ENST00000559873 C7orf31Q8N865 590 aa11.33□□□□□ -0.6
USP3-216ENST00000559873 AFAP1L1Q8TED9 768 aa11.33□□□□□ -0.6
USP3-216ENST00000559873 DIS3LQ8TF46 1054 aaKnown RBP11.33□□□□□ -0.6
USP3-216ENST00000559873 FERMT2Q96AC1 680 aa11.33□□□□□ -0.6
USP3-216ENST00000559873 TMEM60Q9H2L4 133 aa11.33□□□□□ -0.6
USP3-216ENST00000559873 TUT1Q9H6E5 874 aaKnown RBP11.33□□□□□ -0.6
USP3-216ENST00000559873 BCAS3Q9H6U6 928 aa11.33□□□□□ -0.6
USP3-216ENST00000559873 MORC2Q9Y6X9 1032 aaPredicted RBP11.33□□□□□ -0.6
USP3-216ENST00000559873 IGSF9BQ9UPX0 1349 aa11.33□□□□□ -0.6
USP3-216ENST00000559873 DOCK5Q9H7D0 1870 aa11.32□□□□□ -0.6
USP3-216ENST00000559873 IGKV6D-21A0A0A0MT36 114 aa11.32□□□□□ -0.6
USP3-216ENST00000559873 TLR3O15455 904 aaKnown RBP11.32□□□□□ -0.6
USP3-216ENST00000559873 YEATS4O95619 227 aa11.32□□□□□ -0.6
USP3-216ENST00000559873 NCLP19338 710 aaKnown RBP11.32□□□□□ -0.6
USP3-216ENST00000559873 NASPP49321 788 aaPredicted RBP11.32□□□□□ -0.6
USP3-216ENST00000559873 PSEN2P49810 448 aa11.32□□□□□ -0.6
USP3-216ENST00000559873 MNX1P50219 401 aaPredicted RBP11.32□□□□□ -0.6
USP3-216ENST00000559873 CHMP4BP1P59074 171 aa11.32□□□□□ -0.6
USP3-216ENST00000559873 ITGA7Q13683 1181 aa11.32□□□□□ -0.6
USP3-216ENST00000559873 EPHA7Q15375 998 aa11.32□□□□□ -0.6
USP3-216ENST00000559873 KIAA0753Q2KHM9 967 aa11.32□□□□□ -0.6
USP3-216ENST00000559873 FAM47CQ5HY64 1035 aa11.32□□□□□ -0.6
USP3-216ENST00000559873 C1orf53Q5VUE5 145 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms