RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 SSU72P8A0A1W2PR75 194 aa8.04□□□□□ -1.12
VPS13C-206ENST00000558338 SPDYE3A6NKU9 549 aa8.04□□□□□ -1.12
VPS13C-206ENST00000558338 TACC1O75410 805 aa8.04□□□□□ -1.12
VPS13C-206ENST00000558338 LCA5LO95447 670 aa8.04□□□□□ -1.12
VPS13C-206ENST00000558338 TBC1D8O95759 1140 aa8.04□□□□□ -1.12
VPS13C-206ENST00000558338 KRT18P05783 430 aaKnown RBP8.04□□□□□ -1.12
VPS13C-206ENST00000558338 PLA2G4BP0C869 781 aa8.04□□□□□ -1.12
VPS13C-206ENST00000558338 MMP14P50281 582 aa8.04□□□□□ -1.12
VPS13C-206ENST00000558338 TERF2Q15554 542 aa8.04□□□□□ -1.12
VPS13C-206ENST00000558338 LONRF2Q1L5Z9 754 aa8.04□□□□□ -1.12
VPS13C-206ENST00000558338 ABCB5Q2M3G0 1257 aa8.04□□□□□ -1.12
VPS13C-206ENST00000558338 EDRF1Q3B7T1 1238 aa8.04□□□□□ -1.12
VPS13C-206ENST00000558338 MAP9Q49MG5 647 aa8.04□□□□□ -1.12
VPS13C-206ENST00000558338 CCDC40Q4G0X9 1142 aa8.04□□□□□ -1.12
VPS13C-206ENST00000558338 ZCWPW2Q504Y3 356 aa8.04□□□□□ -1.12
VPS13C-206ENST00000558338 SYDE2Q5VT97 1194 aa8.04□□□□□ -1.12
VPS13C-206ENST00000558338 CCDC70Q6NSX1 233 aa8.04□□□□□ -1.12
VPS13C-206ENST00000558338 ZNF771Q7L3S4 317 aaPredicted RBP8.04□□□□□ -1.12
VPS13C-206ENST00000558338 HDXQ7Z353 690 aa8.04□□□□□ -1.12
VPS13C-206ENST00000558338 CACNA2D4Q7Z3S7 1137 aa8.04□□□□□ -1.12
VPS13C-206ENST00000558338 GPBP1Q86WP2 473 aa8.04□□□□□ -1.12
VPS13C-206ENST00000558338 FBXO11Q86XK2 927 aa8.04□□□□□ -1.12
VPS13C-206ENST00000558338 KIAA0825Q8IV33 1275 aa8.04□□□□□ -1.12
VPS13C-206ENST00000558338 ATRIPQ8WXE1 791 aa8.04□□□□□ -1.12
VPS13C-206ENST00000558338 RUBCNQ92622 972 aa8.04□□□□□ -1.12
VPS13C-206ENST00000558338 SYN2Q92777 582 aaPredicted RBP8.04□□□□□ -1.12
VPS13C-206ENST00000558338 ALS2CR12Q96Q35 445 aa8.04□□□□□ -1.12
VPS13C-206ENST00000558338 MXD3Q9BW11 206 aa8.04□□□□□ -1.12
VPS13C-206ENST00000558338 EHMT1Q9H9B1 1298 aa8.04□□□□□ -1.12
VPS13C-206ENST00000558338 DBNDD1Q9H9R9 158 aa8.04□□□□□ -1.12
VPS13C-206ENST00000558338 PRDM16Q9HAZ2 1276 aa8.04□□□□□ -1.12
VPS13C-206ENST00000558338 AGPAT5Q9NUQ2 364 aa8.04□□□□□ -1.12
VPS13C-206ENST00000558338 TMOD2Q9NZR1 351 aa8.04□□□□□ -1.12
VPS13C-206ENST00000558338 CEP72Q9P209 647 aa8.04□□□□□ -1.12
VPS13C-206ENST00000558338 FAM198AQ9UFP1 575 aa8.04□□□□□ -1.12
VPS13C-206ENST00000558338 HERC5Q9UII4 1024 aaKnown RBP8.04□□□□□ -1.12
VPS13C-206ENST00000558338 FRMD3A2A2Y4 597 aa8.03□□□□□ -1.12
VPS13C-206ENST00000558338 TARSL2A2RTX5 802 aaKnown RBP8.03□□□□□ -1.12
VPS13C-206ENST00000558338 RASSF10A6NK89 507 aa8.03□□□□□ -1.12
VPS13C-206ENST00000558338 SREBF1P36956 1147 aa8.03□□□□□ -1.12
VPS13C-206ENST00000558338 PLA2G4AP47712 749 aa8.03□□□□□ -1.12
VPS13C-206ENST00000558338 ARHGAP4P98171 946 aa8.03□□□□□ -1.12
VPS13C-206ENST00000558338 TCP10Q12799 353 aa8.03□□□□□ -1.12
VPS13C-206ENST00000558338 WDR93Q6P2C0 686 aa8.03□□□□□ -1.12
VPS13C-206ENST00000558338 BTNL9Q6UXG8 535 aa8.03□□□□□ -1.12
VPS13C-206ENST00000558338 KCNK18Q7Z418 384 aa8.03□□□□□ -1.12
VPS13C-206ENST00000558338 ZC3H3Q8IXZ2 948 aaKnown RBP8.03□□□□□ -1.12
VPS13C-206ENST00000558338 ZNF687Q8N1G0 1237 aa8.03□□□□□ -1.12
VPS13C-206ENST00000558338 CCDC155Q8N6L0 562 aa8.03□□□□□ -1.12
VPS13C-206ENST00000558338 HPS3Q969F9 1004 aa8.03□□□□□ -1.12
VPS13C-206ENST00000558338 TANGO6Q9C0B7 1094 aa8.03□□□□□ -1.12
VPS13C-206ENST00000558338 MMRN2Q9H8L6 949 aa8.03□□□□□ -1.12
VPS13C-206ENST00000558338 ANKZF1Q9H8Y5 726 aa8.03□□□□□ -1.12
VPS13C-206ENST00000558338 ARHGEF10LQ9HCE6 1279 aa8.03□□□□□ -1.12
VPS13C-206ENST00000558338 KIAA1024Q9UPX6 916 aa8.03□□□□□ -1.12
VPS13C-206ENST00000558338 SLX4Q8IY92 1834 aa8.03□□□□□ -1.12
VPS13C-206ENST00000558338 SCN9AQ15858 1988 aa8.02□□□□□ -1.12
VPS13C-206ENST00000558338 DDTLA6NHG4 134 aaPredicted RBP8.02□□□□□ -1.12
VPS13C-206ENST00000558338 F5H6K3 240 aa8.02□□□□□ -1.12
VPS13C-206ENST00000558338 TRAF5O00463 557 aa8.02□□□□□ -1.12
VPS13C-206ENST00000558338 SEC31AO94979 1220 aaKnown RBP8.02□□□□□ -1.12
VPS13C-206ENST00000558338 SSBP05455 408 aaKnown RBP eCLIP8.02□□□□□ -1.12
VPS13C-206ENST00000558338 BMP3P12645 472 aa8.02□□□□□ -1.12
VPS13C-206ENST00000558338 RPA1P27694 616 aa8.02□□□□□ -1.12
VPS13C-206ENST00000558338 CIITAP33076 1130 aa8.02□□□□□ -1.12
VPS13C-206ENST00000558338 EPS15P42566 896 aa8.02□□□□□ -1.12
VPS13C-206ENST00000558338 KLK7P49862 253 aa8.02□□□□□ -1.12
VPS13C-206ENST00000558338 KIF11P52732 1056 aa8.02□□□□□ -1.12
VPS13C-206ENST00000558338 KLRC3Q07444 240 aa8.02□□□□□ -1.12
VPS13C-206ENST00000558338 IKQ13123 557 aaPredicted RBP8.02□□□□□ -1.12
VPS13C-206ENST00000558338 PDXDC1Q6P996 788 aa8.02□□□□□ -1.12
VPS13C-206ENST00000558338 ZNF526Q8TF50 670 aaPredicted RBP8.02□□□□□ -1.12
VPS13C-206ENST00000558338 SREK1Q8WXA9 508 aaKnown RBP8.02□□□□□ -1.12
VPS13C-206ENST00000558338 CRYGNQ8WXF5 182 aa8.02□□□□□ -1.12
VPS13C-206ENST00000558338 NUDT12Q9BQG2 462 aa8.02□□□□□ -1.12
VPS13C-206ENST00000558338 IFIH1Q9BYX4 1025 aaKnown RBP8.02□□□□□ -1.12
VPS13C-206ENST00000558338 ZSWIM4Q9H7M6 989 aa8.02□□□□□ -1.12
VPS13C-206ENST00000558338 TSKSQ9UJT2 592 aa8.02□□□□□ -1.12
VPS13C-206ENST00000558338 DNM3Q9UQ16 869 aa8.02□□□□□ -1.12
VPS13C-206ENST00000558338 JRKLQ9Y4A0 524 aa8.02□□□□□ -1.12
VPS13C-206ENST00000558338 POTECB2RU33 542 aa8.02□□□□□ -1.13
VPS13C-206ENST00000558338 USP17L15C9J2P7 530 aa8.02□□□□□ -1.13
VPS13C-206ENST00000558338 USP17L13C9JLJ4 530 aa8.02□□□□□ -1.13
VPS13C-206ENST00000558338 USP17L11C9JVI0 530 aa8.02□□□□□ -1.13
VPS13C-206ENST00000558338 USP17L18D6R9N7 530 aa8.02□□□□□ -1.13
VPS13C-206ENST00000558338 USP17L22D6RA61 530 aa8.02□□□□□ -1.13
VPS13C-206ENST00000558338 USP17L17D6RBQ6 530 aa8.02□□□□□ -1.13
VPS13C-206ENST00000558338 USP17L19D6RCP7 530 aa8.02□□□□□ -1.13
VPS13C-206ENST00000558338 USP17L20D6RJB6 530 aa8.02□□□□□ -1.13
VPS13C-206ENST00000558338 PIK3CDO00329 1044 aa8.02□□□□□ -1.13
VPS13C-206ENST00000558338 MAP2K7O14733 419 aa8.02□□□□□ -1.13
VPS13C-206ENST00000558338 MEIS2O14770 477 aa8.02□□□□□ -1.13
VPS13C-206ENST00000558338 CETN3O15182 167 aa8.02□□□□□ -1.13
VPS13C-206ENST00000558338 PJA2O43164 708 aa8.02□□□□□ -1.13
VPS13C-206ENST00000558338 CALUO43852 315 aaPredicted RBP8.02□□□□□ -1.13
VPS13C-206ENST00000558338 AKR1B10O60218 316 aa8.02□□□□□ -1.13
VPS13C-206ENST00000558338 NDUFB10O96000 172 aa8.02□□□□□ -1.13
VPS13C-206ENST00000558338 APBA3O96018 575 aa8.02□□□□□ -1.13
VPS13C-206ENST00000558338 CYP3A4P08684 503 aa8.02□□□□□ -1.13
VPS13C-206ENST00000558338 PRLRP16471 622 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms